HEADER DNA BINDING PROTEIN 14-MAR-18 5ZI8 TITLE CRYSTAL STRUCTURE OF THE PADR-FAMILY TRANSCRIPTIONAL REGULATOR RV3488 TITLE 2 OF MYCOBACTERIUM TUBERCULOSIS H37RV IN COMPLEX WITH CADMIUM ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: RV3488; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.MEERA,R.K.PAL,A.ARORA,B.K.BISWAL REVDAT 3 22-NOV-23 5ZI8 1 LINK REVDAT 2 01-MAY-19 5ZI8 1 JRNL REVDAT 1 17-OCT-18 5ZI8 0 JRNL AUTH M.KUMARI,R.K.PAL,A.K.MISHRA,S.TRIPATHI,B.K.BISWAL, JRNL AUTH 2 K.K.SRIVASTAVA,A.ARORA JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF THE JRNL TITL 2 TRANSCRIPTIONAL REGULATOR RV3488 OFMYCOBACTERIUM JRNL TITL 3 TUBERCULOSISH37RV. JRNL REF BIOCHEM. J. V. 475 3393 2018 JRNL REFN ESSN 1470-8728 JRNL PMID 30266832 JRNL DOI 10.1042/BCJ20180356 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 9457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 464 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 506 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1648 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.84000 REMARK 3 B22 (A**2) : 1.78000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.349 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.231 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.188 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.347 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1679 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1560 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2268 ; 1.810 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3566 ; 1.016 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 203 ; 6.443 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;23.703 ;21.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 275 ;15.351 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;21.574 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 247 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1889 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 381 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 824 ; 1.529 ; 2.583 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 823 ; 1.526 ; 2.579 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1023 ; 2.465 ; 3.845 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1024 ; 2.466 ; 3.850 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 855 ; 2.138 ; 2.969 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 853 ; 2.132 ; 2.967 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1245 ; 3.589 ; 4.329 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1875 ; 5.026 ;30.575 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1870 ; 5.005 ;30.531 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A -5 96 B -5 96 6202 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -5 A 101 REMARK 3 ORIGIN FOR THE GROUP (A): 53.6967 170.7102 144.5983 REMARK 3 T TENSOR REMARK 3 T11: 0.0453 T22: 0.0690 REMARK 3 T33: 0.0242 T12: 0.0183 REMARK 3 T13: -0.0196 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.0689 L22: 0.1131 REMARK 3 L33: 2.6061 L12: 0.0172 REMARK 3 L13: 0.2837 L23: -0.2110 REMARK 3 S TENSOR REMARK 3 S11: -0.0258 S12: -0.0417 S13: 0.0354 REMARK 3 S21: -0.0103 S22: -0.0381 S23: 0.0240 REMARK 3 S31: 0.1114 S32: -0.0572 S33: 0.0638 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -5 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): 52.7275 171.5350 119.1417 REMARK 3 T TENSOR REMARK 3 T11: 0.0287 T22: 0.0170 REMARK 3 T33: 0.0234 T12: -0.0002 REMARK 3 T13: 0.0007 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.8729 L22: 0.6298 REMARK 3 L33: 1.6545 L12: 0.1398 REMARK 3 L13: 0.4897 L23: 0.3112 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: -0.0411 S13: 0.1197 REMARK 3 S21: 0.0269 S22: 0.0108 S23: 0.0314 REMARK 3 S31: 0.1095 S32: 0.0154 S33: 0.0110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZI8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300007026. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9947 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 63.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ZHC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 2.0 M SODIUM REMARK 280 FORMATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 15.24800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.66900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.64550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.66900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 15.24800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.64550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 98 REMARK 465 GLN A 99 REMARK 465 SER A 100 REMARK 465 THR A 102 REMARK 465 ALA A 103 REMARK 465 GLY A 104 REMARK 465 ASN A 105 REMARK 465 GLY A 106 REMARK 465 THR A 107 REMARK 465 GLY B 97 REMARK 465 GLY B 98 REMARK 465 SER B 100 REMARK 465 HIS B 101 REMARK 465 THR B 102 REMARK 465 ALA B 103 REMARK 465 GLY B 104 REMARK 465 ASN B 105 REMARK 465 GLY B 106 REMARK 465 THR B 107 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 37 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 66 NH1 NH2 REMARK 470 ARG A 86 NH1 NH2 REMARK 470 ARG B 93 CD NE CZ NH1 NH2 REMARK 470 VAL B 95 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 2 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 49 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 10 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 33 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 61 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 334 DISTANCE = 6.27 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 16 NE2 REMARK 620 2 GLU A 30 OE2 101.7 REMARK 620 3 HIS A 34 NE2 100.3 95.7 REMARK 620 4 HOH A 323 O 110.9 147.4 78.1 REMARK 620 5 HOH A 332 O 153.3 88.6 103.1 62.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 101 NE2 REMARK 620 2 HIS B 16 NE2 86.3 REMARK 620 3 GLU B 30 OE2 83.8 99.7 REMARK 620 4 HIS B 34 NE2 168.7 104.7 96.8 REMARK 620 5 HOH B 320 O 89.2 90.0 167.6 88.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 202 DBREF 5ZI8 A 1 107 UNP I6X7F9 I6X7F9_MYCTU 1 107 DBREF 5ZI8 B 1 107 UNP I6X7F9 I6X7F9_MYCTU 1 107 SEQADV 5ZI8 ALA A -5 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZI8 MET A -4 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZI8 ASP A -3 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZI8 PRO A -2 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZI8 GLU A -1 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZI8 PHE A 0 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZI8 ALA B -5 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZI8 MET B -4 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZI8 ASP B -3 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZI8 PRO B -2 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZI8 GLU B -1 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZI8 PHE B 0 UNP I6X7F9 EXPRESSION TAG SEQRES 1 A 113 ALA MET ASP PRO GLU PHE MET ARG GLU PHE GLN ARG ALA SEQRES 2 A 113 ALA VAL ARG LEU HIS ILE LEU HIS HIS ALA ALA ASP ASN SEQRES 3 A 113 GLU VAL HIS GLY ALA TRP LEU THR GLN GLU LEU SER ARG SEQRES 4 A 113 HIS GLY TYR ARG VAL SER PRO GLY THR LEU TYR PRO THR SEQRES 5 A 113 LEU HIS ARG LEU GLU ALA ASP GLY LEU LEU VAL SER GLU SEQRES 6 A 113 GLN ARG VAL VAL ASP GLY ARG ALA ARG ARG VAL TYR ARG SEQRES 7 A 113 ALA THR PRO ALA GLY ARG ALA ALA LEU THR GLU ASP ARG SEQRES 8 A 113 ARG ALA LEU GLU GLU LEU ALA ARG GLU VAL LEU GLY GLY SEQRES 9 A 113 GLN SER HIS THR ALA GLY ASN GLY THR SEQRES 1 B 113 ALA MET ASP PRO GLU PHE MET ARG GLU PHE GLN ARG ALA SEQRES 2 B 113 ALA VAL ARG LEU HIS ILE LEU HIS HIS ALA ALA ASP ASN SEQRES 3 B 113 GLU VAL HIS GLY ALA TRP LEU THR GLN GLU LEU SER ARG SEQRES 4 B 113 HIS GLY TYR ARG VAL SER PRO GLY THR LEU TYR PRO THR SEQRES 5 B 113 LEU HIS ARG LEU GLU ALA ASP GLY LEU LEU VAL SER GLU SEQRES 6 B 113 GLN ARG VAL VAL ASP GLY ARG ALA ARG ARG VAL TYR ARG SEQRES 7 B 113 ALA THR PRO ALA GLY ARG ALA ALA LEU THR GLU ASP ARG SEQRES 8 B 113 ARG ALA LEU GLU GLU LEU ALA ARG GLU VAL LEU GLY GLY SEQRES 9 B 113 GLN SER HIS THR ALA GLY ASN GLY THR HET CD A 201 1 HET CD A 202 1 HETNAM CD CADMIUM ION FORMUL 3 CD 2(CD 2+) FORMUL 5 HOH *57(H2 O) HELIX 1 AA1 ASP A -3 ASN A 20 1 24 HELIX 2 AA2 HIS A 23 HIS A 34 1 12 HELIX 3 AA3 SER A 39 ASP A 53 1 15 HELIX 4 AA4 THR A 74 LEU A 96 1 23 HELIX 5 AA5 ASP B -3 ASN B 20 1 24 HELIX 6 AA6 HIS B 23 HIS B 34 1 12 HELIX 7 AA7 SER B 39 ASP B 53 1 15 HELIX 8 AA8 THR B 74 LEU B 96 1 23 SHEET 1 AA1 2 LEU A 56 VAL A 63 0 SHEET 2 AA1 2 ARG A 66 ALA A 73 -1 O ARG A 68 N ARG A 61 SHEET 1 AA2 2 LEU B 56 VAL B 63 0 SHEET 2 AA2 2 ARG B 66 ALA B 73 -1 O ARG B 68 N ARG B 61 LINK NE2 HIS A 16 CD CD A 201 1555 1555 2.34 LINK OE2 GLU A 30 CD CD A 201 1555 1555 2.16 LINK NE2 HIS A 34 CD CD A 201 1555 1555 2.47 LINK NE2 HIS A 101 CD CD A 202 1555 1555 2.33 LINK CD CD A 201 O HOH A 323 1555 1555 2.31 LINK CD CD A 201 O HOH A 332 1555 1555 2.67 LINK CD CD A 202 NE2 HIS B 16 1555 1555 2.33 LINK CD CD A 202 OE2 GLU B 30 1555 1555 2.20 LINK CD CD A 202 NE2 HIS B 34 1555 1555 2.36 LINK CD CD A 202 O HOH B 320 1555 1555 2.38 SITE 1 AC1 6 HIS A 16 GLU A 30 HIS A 34 HOH A 323 SITE 2 AC1 6 HOH A 325 HOH A 332 SITE 1 AC2 6 HIS A 101 HOH A 313 HIS B 16 GLU B 30 SITE 2 AC2 6 HIS B 34 HOH B 320 CRYST1 30.496 49.291 127.338 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032791 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020288 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007853 0.00000