HEADER SUGAR BINDING PROTEIN 14-MAR-18 5ZIB TITLE CRYSTAL STRUCTURE OF HUMAN GNT-V LUMINAL DOMAIN IN APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-1,6-MANNOSYLGLYCOPROTEIN 6-BETA-N- COMPND 3 ACETYLGLUCOSAMINYLTRANSFERASE A; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: ALPHA-MANNOSIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE, COMPND 6 GLCNAC-T V,GNT-V,MANNOSIDE ACETYLGLUCOSAMINYLTRANSFERASE 5,N- COMPND 7 ACETYLGLUCOSAMINYL-TRANSFERASE V; COMPND 8 EC: 2.4.1.155; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MGAT5, GGNT5; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 9 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-1573; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSEC-NPA KEYWDS GLYCOSYLTRANSFERASE CANCER METASTASIS LUMINAL PROTEIN, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.NAGAE,Y.YAMAGUCHI REVDAT 4 09-OCT-24 5ZIB 1 HETSYN REVDAT 3 29-JUL-20 5ZIB 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 05-SEP-18 5ZIB 1 JRNL REVDAT 1 01-AUG-18 5ZIB 0 JRNL AUTH M.NAGAE,Y.KIZUKA,E.MIHARA,Y.KITAGO,S.HANASHIMA,Y.ITO, JRNL AUTH 2 J.TAKAGI,N.TANIGUCHI,Y.YAMAGUCHI JRNL TITL STRUCTURE AND MECHANISM OF CANCER-ASSOCIATED JRNL TITL 2 N-ACETYLGLUCOSAMINYLTRANSFERASE-V. JRNL REF NAT COMMUN V. 9 3380 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30140003 JRNL DOI 10.1038/S41467-018-05931-W REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 60666 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0646 - 5.3216 1.00 2952 128 0.1882 0.2060 REMARK 3 2 5.3216 - 4.2247 1.00 2721 152 0.1552 0.1692 REMARK 3 3 4.2247 - 3.6909 1.00 2693 140 0.1571 0.1921 REMARK 3 4 3.6909 - 3.3535 1.00 2662 134 0.1746 0.2100 REMARK 3 5 3.3535 - 3.1132 1.00 2632 152 0.1993 0.2233 REMARK 3 6 3.1132 - 2.9297 1.00 2637 141 0.2010 0.2590 REMARK 3 7 2.9297 - 2.7830 1.00 2602 144 0.1990 0.2425 REMARK 3 8 2.7830 - 2.6619 1.00 2608 151 0.2005 0.2174 REMARK 3 9 2.6619 - 2.5594 1.00 2594 134 0.1905 0.2465 REMARK 3 10 2.5594 - 2.4711 1.00 2624 138 0.1945 0.2487 REMARK 3 11 2.4711 - 2.3938 1.00 2567 154 0.1920 0.2495 REMARK 3 12 2.3938 - 2.3254 1.00 2565 144 0.1881 0.2047 REMARK 3 13 2.3254 - 2.2642 1.00 2628 122 0.1929 0.2377 REMARK 3 14 2.2642 - 2.2089 1.00 2582 129 0.1881 0.2155 REMARK 3 15 2.2089 - 2.1587 1.00 2557 156 0.1952 0.2863 REMARK 3 16 2.1587 - 2.1128 1.00 2593 126 0.2040 0.2300 REMARK 3 17 2.1128 - 2.0705 1.00 2550 137 0.2112 0.2527 REMARK 3 18 2.0705 - 2.0314 1.00 2559 152 0.2263 0.2642 REMARK 3 19 2.0314 - 1.9952 1.00 2554 142 0.2261 0.2624 REMARK 3 20 1.9952 - 1.9613 1.00 2541 163 0.2328 0.2744 REMARK 3 21 1.9613 - 1.9297 1.00 2595 124 0.2473 0.2691 REMARK 3 22 1.9297 - 1.9000 1.00 2557 130 0.2644 0.3348 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4863 REMARK 3 ANGLE : 0.875 6585 REMARK 3 CHIRALITY : 0.053 699 REMARK 3 PLANARITY : 0.006 839 REMARK 3 DIHEDRAL : 13.105 2938 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZIB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300007047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60787 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M DL-MALIC ACID (PH 7.0), 20% REMARK 280 (W/V) POLYETHYLENE GLYCOL (PEG) 3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 179.23733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 89.61867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 134.42800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.80933 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 224.04667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 179.23733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 89.61867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.80933 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 134.42800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 224.04667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1394 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 116 REMARK 465 LYS A 117 REMARK 465 ASP A 118 REMARK 465 GLY A 119 REMARK 465 SER A 120 REMARK 465 THR A 121 REMARK 465 ALA A 122 REMARK 465 VAL A 123 REMARK 465 PRO A 124 REMARK 465 SER A 125 REMARK 465 LEU A 126 REMARK 465 VAL A 127 REMARK 465 GLU A 208 REMARK 465 GLU A 209 REMARK 465 ALA A 210 REMARK 465 ASP A 211 REMARK 465 LYS A 279 REMARK 465 GLU A 280 REMARK 465 SER A 281 REMARK 465 GLY A 282 REMARK 465 PHE A 283 REMARK 465 LYS A 284 REMARK 465 ILE A 285 REMARK 465 ALA A 286 REMARK 465 GLU A 287 REMARK 465 THR A 288 REMARK 465 ALA A 289 REMARK 465 PHE A 290 REMARK 465 SER A 291 REMARK 465 GLY A 292 REMARK 465 GLY A 293 REMARK 465 PRO A 294 REMARK 465 LYS A 330 REMARK 465 VAL A 331 REMARK 465 VAL A 332 REMARK 465 GLY A 333 REMARK 465 ASN A 334 REMARK 465 ARG A 335 REMARK 465 SER A 336 REMARK 465 THR A 340 REMARK 465 VAL A 341 REMARK 465 GLY A 342 REMARK 465 ASP A 343 REMARK 465 ARG A 344 REMARK 465 GLY A 481 REMARK 465 SER A 482 REMARK 465 SER A 483 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1388 O HOH A 1389 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 145 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 520 71.64 31.58 REMARK 500 THR A 556 140.19 -171.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1394 DISTANCE = 6.30 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ZIC RELATED DB: PDB DBREF 5ZIB A 121 741 UNP Q09328 MGT5A_HUMAN 121 741 SEQADV 5ZIB GLY A 116 UNP Q09328 EXPRESSION TAG SEQADV 5ZIB LYS A 117 UNP Q09328 EXPRESSION TAG SEQADV 5ZIB ASP A 118 UNP Q09328 EXPRESSION TAG SEQADV 5ZIB GLY A 119 UNP Q09328 EXPRESSION TAG SEQADV 5ZIB SER A 120 UNP Q09328 EXPRESSION TAG SEQRES 1 A 626 GLY LYS ASP GLY SER THR ALA VAL PRO SER LEU VAL ALA SEQRES 2 A 626 LEU GLU LYS ILE ASN VAL ALA ASP ILE ILE ASN GLY ALA SEQRES 3 A 626 GLN GLU LYS CYS VAL LEU PRO PRO MET ASP GLY TYR PRO SEQRES 4 A 626 HIS CYS GLU GLY LYS ILE LYS TRP MET LYS ASP MET TRP SEQRES 5 A 626 ARG SER ASP PRO CYS TYR ALA ASP TYR GLY VAL ASP GLY SEQRES 6 A 626 SER THR CYS SER PHE PHE ILE TYR LEU SER GLU VAL GLU SEQRES 7 A 626 ASN TRP CYS PRO HIS LEU PRO TRP ARG ALA LYS ASN PRO SEQRES 8 A 626 TYR GLU GLU ALA ASP HIS ASN SER LEU ALA GLU ILE ARG SEQRES 9 A 626 THR ASP PHE ASN ILE LEU TYR SER MET MET LYS LYS HIS SEQRES 10 A 626 GLU GLU PHE ARG TRP MET ARG LEU ARG ILE ARG ARG MET SEQRES 11 A 626 ALA ASP ALA TRP ILE GLN ALA ILE LYS SER LEU ALA GLU SEQRES 12 A 626 LYS GLN ASN LEU GLU LYS ARG LYS ARG LYS LYS VAL LEU SEQRES 13 A 626 VAL HIS LEU GLY LEU LEU THR LYS GLU SER GLY PHE LYS SEQRES 14 A 626 ILE ALA GLU THR ALA PHE SER GLY GLY PRO LEU GLY GLU SEQRES 15 A 626 LEU VAL GLN TRP SER ASP LEU ILE THR SER LEU TYR LEU SEQRES 16 A 626 LEU GLY HIS ASP ILE ARG ILE SER ALA SER LEU ALA GLU SEQRES 17 A 626 LEU LYS GLU ILE MET LYS LYS VAL VAL GLY ASN ARG SER SEQRES 18 A 626 GLY CYS PRO THR VAL GLY ASP ARG ILE VAL GLU LEU ILE SEQRES 19 A 626 TYR ILE ASP ILE VAL GLY LEU ALA GLN PHE LYS LYS THR SEQRES 20 A 626 LEU GLY PRO SER TRP VAL HIS TYR GLN CYS MET LEU ARG SEQRES 21 A 626 VAL LEU ASP SER PHE GLY THR GLU PRO GLU PHE ASN HIS SEQRES 22 A 626 ALA ASN TYR ALA GLN SER LYS GLY HIS LYS THR PRO TRP SEQRES 23 A 626 GLY LYS TRP ASN LEU ASN PRO GLN GLN PHE TYR THR MET SEQRES 24 A 626 PHE PRO HIS THR PRO ASP ASN SER PHE LEU GLY PHE VAL SEQRES 25 A 626 VAL GLU GLN HIS LEU ASN SER SER ASP ILE HIS HIS ILE SEQRES 26 A 626 ASN GLU ILE LYS ARG GLN ASN GLN SER LEU VAL TYR GLY SEQRES 27 A 626 LYS VAL ASP SER PHE TRP LYS ASN LYS LYS ILE TYR LEU SEQRES 28 A 626 ASP ILE ILE HIS THR TYR MET GLU VAL HIS ALA THR VAL SEQRES 29 A 626 TYR GLY SER SER THR LYS ASN ILE PRO SER TYR VAL LYS SEQRES 30 A 626 ASN HIS GLY ILE LEU SER GLY ARG ASP LEU GLN PHE LEU SEQRES 31 A 626 LEU ARG GLU THR LYS LEU PHE VAL GLY LEU GLY PHE PRO SEQRES 32 A 626 TYR GLU GLY PRO ALA PRO LEU GLU ALA ILE ALA ASN GLY SEQRES 33 A 626 CYS ALA PHE LEU ASN PRO LYS PHE ASN PRO PRO LYS SER SEQRES 34 A 626 SER LYS ASN THR ASP PHE PHE ILE GLY LYS PRO THR LEU SEQRES 35 A 626 ARG GLU LEU THR SER GLN HIS PRO TYR ALA GLU VAL PHE SEQRES 36 A 626 ILE GLY ARG PRO HIS VAL TRP THR VAL ASP LEU ASN ASN SEQRES 37 A 626 GLN GLU GLU VAL GLU ASP ALA VAL LYS ALA ILE LEU ASN SEQRES 38 A 626 GLN LYS ILE GLU PRO TYR MET PRO TYR GLU PHE THR CYS SEQRES 39 A 626 GLU GLY MET LEU GLN ARG ILE ASN ALA PHE ILE GLU LYS SEQRES 40 A 626 GLN ASP PHE CYS HIS GLY GLN VAL MET TRP PRO PRO LEU SEQRES 41 A 626 SER ALA LEU GLN VAL LYS LEU ALA GLU PRO GLY GLN SER SEQRES 42 A 626 CYS LYS GLN VAL CYS GLN GLU SER GLN LEU ILE CYS GLU SEQRES 43 A 626 PRO SER PHE PHE GLN HIS LEU ASN LYS ASP LYS ASP MET SEQRES 44 A 626 LEU LYS TYR LYS VAL THR CYS GLN SER SER GLU LEU ALA SEQRES 45 A 626 LYS ASP ILE LEU VAL PRO SER PHE ASP PRO LYS ASN LYS SEQRES 46 A 626 HIS CYS VAL PHE GLN GLY ASP LEU LEU LEU PHE SER CYS SEQRES 47 A 626 ALA GLY ALA HIS PRO ARG HIS GLN ARG VAL CYS PRO CYS SEQRES 48 A 626 ARG ASP PHE ILE LYS GLY GLN VAL ALA LEU CYS LYS ASP SEQRES 49 A 626 CYS LEU HET NAG A1001 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG C8 H15 N O6 FORMUL 3 HOH *294(H2 O) HELIX 1 AA1 ALA A 128 GLY A 140 1 13 HELIX 2 AA2 HIS A 155 TRP A 167 1 13 HELIX 3 AA3 PRO A 171 TYR A 176 1 6 HELIX 4 AA4 SER A 181 VAL A 192 1 12 HELIX 5 AA5 PHE A 222 LYS A 230 1 9 HELIX 6 AA6 PHE A 235 GLN A 260 1 26 HELIX 7 AA7 GLY A 275 THR A 278 5 4 HELIX 8 AA8 GLY A 296 LEU A 311 1 16 HELIX 9 AA9 SER A 320 MET A 328 1 9 HELIX 10 AB1 ILE A 353 GLY A 364 1 12 HELIX 11 AB2 PRO A 365 CYS A 372 5 8 HELIX 12 AB3 GLU A 383 HIS A 388 1 6 HELIX 13 AB4 HIS A 388 LYS A 395 1 8 HELIX 14 AB5 ASN A 407 GLN A 409 5 3 HELIX 15 AB6 ASN A 433 ASN A 441 1 9 HELIX 16 AB7 VAL A 455 LYS A 460 5 6 HELIX 17 AB8 LYS A 462 THR A 471 1 10 HELIX 18 AB9 SER A 498 GLU A 508 1 11 HELIX 19 AC1 PRO A 522 ASN A 530 1 9 HELIX 20 AC2 THR A 548 ILE A 552 5 5 HELIX 21 AC3 HIS A 564 ILE A 571 1 8 HELIX 22 AC4 ASN A 583 ASN A 596 1 14 HELIX 23 AC5 PRO A 604 PHE A 607 5 4 HELIX 24 AC6 THR A 608 GLN A 623 1 16 HELIX 25 AC7 PRO A 634 SER A 636 5 3 HELIX 26 AC8 SER A 648 GLU A 655 1 8 HELIX 27 AC9 PRO A 662 LEU A 668 5 7 HELIX 28 AD1 LYS A 670 LYS A 676 1 7 HELIX 29 AD2 ASP A 707 PHE A 711 5 5 HELIX 30 AD3 CYS A 737 LEU A 741 5 5 SHEET 1 AA1 6 ASP A 314 SER A 318 0 SHEET 2 AA1 6 LYS A 269 HIS A 273 1 N VAL A 272 O SER A 318 SHEET 3 AA1 6 LEU A 348 ASP A 352 1 O TYR A 350 N LEU A 271 SHEET 4 AA1 6 LEU A 374 LEU A 377 1 O LEU A 377 N ILE A 351 SHEET 5 AA1 6 PHE A 411 THR A 413 1 O TYR A 412 N VAL A 376 SHEET 6 AA1 6 SER A 422 PHE A 423 1 O SER A 422 N PHE A 411 SHEET 1 AA2 6 LYS A 492 ASN A 493 0 SHEET 2 AA2 6 GLU A 474 ALA A 477 1 N VAL A 475 O LYS A 492 SHEET 3 AA2 6 GLN A 448 VAL A 451 1 N VAL A 451 O HIS A 476 SHEET 4 AA2 6 LEU A 511 VAL A 513 1 O VAL A 513 N LEU A 450 SHEET 5 AA2 6 ALA A 533 LYS A 543 1 O ALA A 533 N PHE A 512 SHEET 6 AA2 6 LEU A 560 SER A 562 -1 O LEU A 560 N LYS A 543 SHEET 1 AA3 6 LYS A 492 ASN A 493 0 SHEET 2 AA3 6 GLU A 474 ALA A 477 1 N VAL A 475 O LYS A 492 SHEET 3 AA3 6 GLN A 448 VAL A 451 1 N VAL A 451 O HIS A 476 SHEET 4 AA3 6 LEU A 511 VAL A 513 1 O VAL A 513 N LEU A 450 SHEET 5 AA3 6 ALA A 533 LYS A 543 1 O ALA A 533 N PHE A 512 SHEET 6 AA3 6 VAL A 576 VAL A 579 1 O TRP A 577 N ASN A 536 SHEET 1 AA4 3 LEU A 638 ALA A 643 0 SHEET 2 AA4 3 GLN A 721 ARG A 727 -1 O CYS A 724 N LYS A 641 SHEET 3 AA4 3 ILE A 659 CYS A 660 -1 N ILE A 659 O ARG A 727 SHEET 1 AA5 5 LEU A 638 ALA A 643 0 SHEET 2 AA5 5 GLN A 721 ARG A 727 -1 O CYS A 724 N LYS A 641 SHEET 3 AA5 5 SER A 694 ASP A 696 -1 N PHE A 695 O GLN A 721 SHEET 4 AA5 5 HIS A 701 GLN A 705 -1 O HIS A 701 N ASP A 696 SHEET 5 AA5 5 SER A 683 ALA A 687 1 N GLU A 685 O PHE A 704 SSBOND 1 CYS A 145 CYS A 183 1555 1555 2.04 SSBOND 2 CYS A 156 CYS A 196 1555 1555 2.05 SSBOND 3 CYS A 172 CYS A 338 1555 1555 2.04 SSBOND 4 CYS A 372 CYS A 626 1555 1555 2.08 SSBOND 5 CYS A 649 CYS A 724 1555 1555 2.06 SSBOND 6 CYS A 653 CYS A 726 1555 1555 2.04 SSBOND 7 CYS A 660 CYS A 713 1555 1555 2.08 SSBOND 8 CYS A 681 CYS A 702 1555 1555 2.04 SSBOND 9 CYS A 737 CYS A 740 1555 1555 2.10 LINK ND2 ASN A 433 C1 NAG A1001 1555 1555 1.44 CISPEP 1 GLY A 337 CYS A 338 0 -2.09 CISPEP 2 PHE A 517 PRO A 518 0 5.03 CISPEP 3 ASN A 540 PRO A 541 0 10.85 CISPEP 4 ARG A 573 PRO A 574 0 2.94 CISPEP 5 TRP A 632 PRO A 633 0 -1.78 CISPEP 6 VAL A 692 PRO A 693 0 6.53 CRYST1 97.671 97.671 268.856 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010238 0.005911 0.000000 0.00000 SCALE2 0.000000 0.011822 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003719 0.00000