HEADER RNA BINDING PROTEIN 23-MAR-18 5ZK7 TITLE STAPLED-PEPTIDES TAILORED AGAINST INITIATION OF TRANSLATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 4E; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 28-217; COMPND 5 SYNONYM: EIF4E; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ACE-ARG-TYR-SER-ARG-MK8-GLN-LEU-LEU-MK8-LEU-PHE-ARG-NH2; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: N-TERMINAL ACETYLATION, C-TERMINAL AMIDATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EIF4E, EIF4EL1, EIF4F; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS CAP DEPENDENT TRANSLATION, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.LAMA,A.LIBERATOR,Y.FROSI,J.NAKHLE,N.TSOMIA,T.BASHIR,D.P.LANE, AUTHOR 2 C.J.BROWN,C.S.VERMA,S.AUVIN,F.CIESIELSKI,M.UHRING REVDAT 4 23-OCT-24 5ZK7 1 REMARK REVDAT 3 22-NOV-23 5ZK7 1 REMARK REVDAT 2 03-APR-19 5ZK7 1 JRNL REVDAT 1 20-FEB-19 5ZK7 0 JRNL AUTH D.LAMA,A.M.LIBERATORE,Y.FROSI,J.NAKHLE,N.TSOMAIA,T.BASHIR, JRNL AUTH 2 D.P.LANE,C.J.BROWN,C.S.VERMA,S.AUVIN JRNL TITL STRUCTURAL INSIGHTS REVEAL A RECOGNITION FEATURE FOR JRNL TITL 2 TAILORING HYDROCARBON STAPLED-PEPTIDES AGAINST THE JRNL TITL 3 EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PROTEIN. JRNL REF CHEM SCI V. 10 2489 2019 JRNL REFN ISSN 2041-6520 JRNL PMID 30881679 JRNL DOI 10.1039/C8SC03759K REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1258 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1675 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3083 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 129 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.05000 REMARK 3 B22 (A**2) : 1.65000 REMARK 3 B33 (A**2) : -0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.257 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.241 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3221 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2867 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4385 ; 1.353 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6584 ; 0.891 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 361 ; 6.392 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;37.468 ;23.125 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 500 ;13.753 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;13.747 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 464 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3532 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 732 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1506 ; 1.576 ; 3.945 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1504 ; 1.576 ; 3.947 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1869 ; 2.764 ; 5.892 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1869 ; 2.764 ; 5.892 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1715 ; 1.329 ; 4.107 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1715 ; 1.327 ; 4.107 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2517 ; 2.301 ; 6.127 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3598 ; 4.482 ;43.929 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3599 ; 4.482 ;43.931 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZK7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300007222. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.983998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25155 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.61700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4TPW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM IODIDE, 0.1M REMARK 280 MES/IMIDAZOLE PH6.5, 25%(WV) PEG4000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.67500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.50500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.08500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.50500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.67500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.08500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 27 REMARK 465 VAL A 28 REMARK 465 ASN A 50 REMARK 465 ASP A 51 REMARK 465 LYS A 52 REMARK 465 SER A 53 REMARK 465 LYS A 54 REMARK 465 THR A 55 REMARK 465 LYS A 206 REMARK 465 SER A 207 REMARK 465 GLY A 208 REMARK 465 SER A 209 REMARK 465 THR A 210 REMARK 465 MET B 27 REMARK 465 VAL B 28 REMARK 465 ALA B 29 REMARK 465 ASN B 30 REMARK 465 PRO B 31 REMARK 465 LYS B 52 REMARK 465 SER B 53 REMARK 465 LYS B 54 REMARK 465 THR B 55 REMARK 465 THR B 205 REMARK 465 LYS B 206 REMARK 465 SER B 207 REMARK 465 GLY B 208 REMARK 465 SER B 209 REMARK 465 THR B 210 REMARK 465 THR B 211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 GLN A 57 CG CD OE1 NE2 REMARK 470 ARG A 61 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 GLN A 120 CG CD OE1 NE2 REMARK 470 ARG A 123 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 ASP B 51 CG OD1 OD2 REMARK 470 ARG B 61 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 GLN B 120 CG CD OE1 NE2 REMARK 470 ARG B 123 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 174 CG CD OE1 OE2 REMARK 470 LYS B 192 CG CD CE NZ REMARK 470 LYS B 212 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE MK8 D 5 CE MK8 D 9 1.34 REMARK 500 CE MK8 C 5 CE MK8 C 9 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 67 20.91 -143.34 REMARK 500 ASP A 143 -126.46 57.13 REMARK 500 HIS B 33 -108.83 -147.51 REMARK 500 ASP B 67 20.57 -140.53 REMARK 500 GLN B 121 -33.97 -172.96 REMARK 500 ASP B 143 -122.73 59.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MGT A 1001 REMARK 610 MGT B 1001 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MGT A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MGT B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE C 0 and ARG C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ARG C 4 and MK8 C 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide MK8 C 5 and GLN C 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues MK8 C 5 and MK8 C 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU C 8 and MK8 C 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide MK8 C 9 and LEU C 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ARG C 12 and NH2 C REMARK 800 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE D 0 and ARG D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ARG D 4 and MK8 D 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues MK8 D 5 and MK8 D 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide MK8 D 5 and GLN D 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU D 8 and MK8 D 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide MK8 D 9 and LEU D 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ARG D 12 and NH2 D REMARK 800 13 REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE CHAIN B IS A HYBRID SEQUENCE WHICH REMARK 999 CORRESPONDS APPROXIMATELY TO SEQUENCE 609-624 OF EIF4E (Q04637). DBREF 5ZK7 A 28 217 UNP P06730 IF4E_HUMAN 28 217 DBREF 5ZK7 B 28 217 UNP P06730 IF4E_HUMAN 28 217 DBREF 5ZK7 C 0 13 PDB 5ZK7 5ZK7 0 13 DBREF 5ZK7 D 0 13 PDB 5ZK7 5ZK7 0 13 SEQADV 5ZK7 MET A 27 UNP P06730 INITIATING METHIONINE SEQADV 5ZK7 MET B 27 UNP P06730 INITIATING METHIONINE SEQRES 1 A 191 MET VAL ALA ASN PRO GLU HIS TYR ILE LYS HIS PRO LEU SEQRES 2 A 191 GLN ASN ARG TRP ALA LEU TRP PHE PHE LYS ASN ASP LYS SEQRES 3 A 191 SER LYS THR TRP GLN ALA ASN LEU ARG LEU ILE SER LYS SEQRES 4 A 191 PHE ASP THR VAL GLU ASP PHE TRP ALA LEU TYR ASN HIS SEQRES 5 A 191 ILE GLN LEU SER SER ASN LEU MET PRO GLY CYS ASP TYR SEQRES 6 A 191 SER LEU PHE LYS ASP GLY ILE GLU PRO MET TRP GLU ASP SEQRES 7 A 191 GLU LYS ASN LYS ARG GLY GLY ARG TRP LEU ILE THR LEU SEQRES 8 A 191 ASN LYS GLN GLN ARG ARG SER ASP LEU ASP ARG PHE TRP SEQRES 9 A 191 LEU GLU THR LEU LEU CYS LEU ILE GLY GLU SER PHE ASP SEQRES 10 A 191 ASP TYR SER ASP ASP VAL CYS GLY ALA VAL VAL ASN VAL SEQRES 11 A 191 ARG ALA LYS GLY ASP LYS ILE ALA ILE TRP THR THR GLU SEQRES 12 A 191 CYS GLU ASN ARG GLU ALA VAL THR HIS ILE GLY ARG VAL SEQRES 13 A 191 TYR LYS GLU ARG LEU GLY LEU PRO PRO LYS ILE VAL ILE SEQRES 14 A 191 GLY TYR GLN SER HIS ALA ASP THR ALA THR LYS SER GLY SEQRES 15 A 191 SER THR THR LYS ASN ARG PHE VAL VAL SEQRES 1 B 191 MET VAL ALA ASN PRO GLU HIS TYR ILE LYS HIS PRO LEU SEQRES 2 B 191 GLN ASN ARG TRP ALA LEU TRP PHE PHE LYS ASN ASP LYS SEQRES 3 B 191 SER LYS THR TRP GLN ALA ASN LEU ARG LEU ILE SER LYS SEQRES 4 B 191 PHE ASP THR VAL GLU ASP PHE TRP ALA LEU TYR ASN HIS SEQRES 5 B 191 ILE GLN LEU SER SER ASN LEU MET PRO GLY CYS ASP TYR SEQRES 6 B 191 SER LEU PHE LYS ASP GLY ILE GLU PRO MET TRP GLU ASP SEQRES 7 B 191 GLU LYS ASN LYS ARG GLY GLY ARG TRP LEU ILE THR LEU SEQRES 8 B 191 ASN LYS GLN GLN ARG ARG SER ASP LEU ASP ARG PHE TRP SEQRES 9 B 191 LEU GLU THR LEU LEU CYS LEU ILE GLY GLU SER PHE ASP SEQRES 10 B 191 ASP TYR SER ASP ASP VAL CYS GLY ALA VAL VAL ASN VAL SEQRES 11 B 191 ARG ALA LYS GLY ASP LYS ILE ALA ILE TRP THR THR GLU SEQRES 12 B 191 CYS GLU ASN ARG GLU ALA VAL THR HIS ILE GLY ARG VAL SEQRES 13 B 191 TYR LYS GLU ARG LEU GLY LEU PRO PRO LYS ILE VAL ILE SEQRES 14 B 191 GLY TYR GLN SER HIS ALA ASP THR ALA THR LYS SER GLY SEQRES 15 B 191 SER THR THR LYS ASN ARG PHE VAL VAL SEQRES 1 C 14 ACE ARG TYR SER ARG MK8 GLN LEU LEU MK8 LEU PHE ARG SEQRES 2 C 14 NH2 SEQRES 1 D 14 ACE ARG TYR SER ARG MK8 GLN LEU LEU MK8 LEU PHE ARG SEQRES 2 D 14 NH2 HET ACE C 0 3 HET MK8 C 5 9 HET MK8 C 9 9 HET NH2 C 13 1 HET ACE D 0 3 HET MK8 D 5 9 HET MK8 D 9 9 HET NH2 D 13 1 HET MGT A1001 25 HET IOD A1002 1 HET IOD A1003 1 HET GOL A1004 6 HET CL A1005 1 HET MGT B1001 25 HET IOD C 101 1 HET IOD D 101 1 HET IOD D 102 1 HETNAM ACE ACETYL GROUP HETNAM MK8 2-METHYL-L-NORLEUCINE HETNAM NH2 AMINO GROUP HETNAM MGT 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE HETNAM IOD IODIDE ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ACE 2(C2 H4 O) FORMUL 3 MK8 4(C7 H15 N O2) FORMUL 3 NH2 2(H2 N) FORMUL 5 MGT 2(C11 H20 N5 O14 P3) FORMUL 6 IOD 5(I 1-) FORMUL 8 GOL C3 H8 O3 FORMUL 9 CL CL 1- FORMUL 14 HOH *129(H2 O) HELIX 1 AA1 VAL A 69 ILE A 79 1 11 HELIX 2 AA2 LEU A 81 LEU A 85 5 5 HELIX 3 AA3 ASP A 104 ARG A 109 1 6 HELIX 4 AA4 GLN A 120 ASP A 125 1 6 HELIX 5 AA5 ASP A 125 GLY A 139 1 15 HELIX 6 AA6 PHE A 142 ASP A 147 5 6 HELIX 7 AA7 ASN A 172 GLY A 188 1 17 HELIX 8 AA8 HIS A 200 THR A 205 1 6 HELIX 9 AA9 TRP B 56 ALA B 58 5 3 HELIX 10 AB1 VAL B 69 HIS B 78 1 10 HELIX 11 AB2 LEU B 81 LEU B 85 5 5 HELIX 12 AB3 ASP B 104 ARG B 109 1 6 HELIX 13 AB4 ASP B 125 GLY B 139 1 15 HELIX 14 AB5 PHE B 142 ASP B 147 5 6 HELIX 15 AB6 ASN B 172 GLY B 188 1 17 HELIX 16 AB7 HIS B 200 ALA B 204 1 5 HELIX 17 AB8 SER C 3 LEU C 10 1 8 HELIX 18 AB9 SER D 3 LEU D 10 1 8 SHEET 1 AA1 8 LEU A 60 THR A 68 0 SHEET 2 AA1 8 PRO A 38 PHE A 48 -1 N LEU A 45 O SER A 64 SHEET 3 AA1 8 CYS A 89 LYS A 95 -1 O SER A 92 N TRP A 46 SHEET 4 AA1 8 VAL A 149 VAL A 156 -1 O VAL A 156 N CYS A 89 SHEET 5 AA1 8 LYS A 162 THR A 167 -1 O LYS A 162 N ASN A 155 SHEET 6 AA1 8 GLY A 111 THR A 116 -1 N ILE A 115 O ILE A 163 SHEET 7 AA1 8 GLY A 196 SER A 199 -1 O GLN A 198 N ARG A 112 SHEET 8 AA1 8 PHE A 215 VAL A 216 -1 O PHE A 215 N TYR A 197 SHEET 1 AA2 8 LEU B 60 THR B 68 0 SHEET 2 AA2 8 PRO B 38 PHE B 48 -1 N LEU B 39 O ASP B 67 SHEET 3 AA2 8 ASP B 90 LYS B 95 -1 O SER B 92 N TRP B 46 SHEET 4 AA2 8 VAL B 149 ASN B 155 -1 O VAL B 154 N TYR B 91 SHEET 5 AA2 8 LYS B 162 THR B 167 -1 O TRP B 166 N GLY B 151 SHEET 6 AA2 8 GLY B 111 THR B 116 -1 N GLY B 111 O THR B 167 SHEET 7 AA2 8 ILE B 195 SER B 199 -1 O GLY B 196 N LEU B 114 SHEET 8 AA2 8 PHE B 215 VAL B 217 -1 O PHE B 215 N TYR B 197 LINK C ACE C 0 N ARG C 1 1555 1555 1.35 LINK C ARG C 4 N MK8 C 5 1555 1555 1.34 LINK C MK8 C 5 N GLN C 6 1555 1555 1.28 LINK C LEU C 8 N MK8 C 9 1555 1555 1.34 LINK C MK8 C 9 N LEU C 10 1555 1555 1.29 LINK C ARG C 12 N NH2 C 13 1555 1555 1.43 LINK C ACE D 0 N ARG D 1 1555 1555 1.36 LINK C ARG D 4 N MK8 D 5 1555 1555 1.36 LINK C MK8 D 5 N GLN D 6 1555 1555 1.28 LINK C LEU D 8 N MK8 D 9 1555 1555 1.34 LINK C MK8 D 9 N LEU D 10 1555 1555 1.27 LINK C ARG D 12 N NH2 D 13 1555 1555 1.40 SITE 1 AC1 6 TRP A 56 MET A 101 TRP A 102 GLU A 103 SITE 2 AC1 6 ARG A 157 HOH A1112 SITE 1 AC2 1 GLY A 88 SITE 1 AC3 1 ASN A 77 SITE 1 AC4 3 ASN A 77 HOH A1139 ASN B 77 SITE 1 AC5 3 ARG A 128 LEU A 187 ARG C 12 SITE 1 AC6 7 PRO A 87 ARG A 109 TRP B 56 MET B 101 SITE 2 AC6 7 TRP B 102 GLU B 103 ARG B 157 SITE 1 AC7 8 PRO A 38 PRO B 38 GLN B 40 HOH B1107 SITE 2 AC7 8 TYR C 2 HOH C 202 HOH C 205 ARG D 1 SITE 1 AC8 11 GLU B 132 ARG B 186 SER C 3 GLN C 6 SITE 2 AC8 11 LEU C 7 LEU C 8 MK8 C 9 HOH C 204 SITE 3 AC8 11 MK8 D 9 PHE D 11 ARG D 12 SITE 1 AC9 10 ILE A 35 TYR C 2 SER C 3 ARG C 4 SITE 2 AC9 10 LEU C 7 LEU C 8 MK8 C 9 LEU C 10 SITE 3 AC9 10 HOH C 206 MK8 D 9 SITE 1 AD1 12 HIS A 33 ILE A 35 SER C 3 ARG C 4 SITE 2 AD1 12 GLN C 6 LEU C 7 LEU C 8 LEU C 10 SITE 3 AD1 12 PHE C 11 ARG D 4 MK8 D 5 MK8 D 9 SITE 1 AD2 11 HIS A 33 ILE A 35 ARG C 4 MK8 C 5 SITE 2 AD2 11 GLN C 6 LEU C 7 LEU C 10 PHE C 11 SITE 3 AD2 11 ARG D 4 MK8 D 5 LEU D 8 SITE 1 AD3 13 HIS A 33 ILE A 35 HIS B 37 VAL B 69 SITE 2 AD3 13 GLU B 70 MK8 C 5 GLN C 6 LEU C 7 SITE 3 AD3 13 LEU C 8 PHE C 11 ARG C 12 ARG D 4 SITE 4 AD3 13 MK8 D 5 SITE 1 AD4 8 ALA A 29 ARG A 128 GLU A 132 ARG A 186 SITE 2 AD4 8 CL A1005 LEU C 10 PHE C 11 ARG D 4 SITE 1 AD5 10 PRO A 38 LEU A 39 GLN A 40 HOH A1105 SITE 2 AD5 10 PRO B 38 GLN B 40 HOH B1111 ACE C 0 SITE 3 AD5 10 TYR D 2 HOH D 206 SITE 1 AD6 13 GLU A 132 ARG A 186 GLU B 32 MK8 C 9 SITE 2 AD6 13 PHE C 11 ARG C 12 SER D 3 GLN D 6 SITE 3 AD6 13 LEU D 7 LEU D 8 MK8 D 9 HOH D 203 SITE 4 AD6 13 HOH D 205 SITE 1 AD7 13 GLU B 32 ILE B 35 ARG C 4 MK8 C 5 SITE 2 AD7 13 MK8 C 9 SER D 3 ARG D 4 GLN D 6 SITE 3 AD7 13 LEU D 7 LEU D 8 LEU D 10 PHE D 11 SITE 4 AD7 13 HOH D 205 SITE 1 AD8 10 GLU B 32 MK8 C 9 TYR D 2 SER D 3 SITE 2 AD8 10 ARG D 4 LEU D 7 LEU D 8 MK8 D 9 SITE 3 AD8 10 LEU D 10 HOH D 205 SITE 1 AD9 12 LEU A 135 GLU B 32 ILE B 35 ARG C 4 SITE 2 AD9 12 MK8 C 5 LEU C 8 ARG D 4 MK8 D 5 SITE 3 AD9 12 GLN D 6 LEU D 7 LEU D 10 PHE D 11 SITE 1 AE1 13 HIS A 37 VAL A 69 GLU B 32 ILE B 35 SITE 2 AE1 13 ARG C 4 MK8 C 5 MK8 D 5 GLN D 6 SITE 3 AE1 13 LEU D 7 LEU D 8 PHE D 11 ARG D 12 SITE 4 AE1 13 HOH D 202 SITE 1 AE2 7 TYR A 34 ARG B 128 GLU B 132 ARG C 4 SITE 2 AE2 7 LEU D 10 PHE D 11 HOH D 204 CRYST1 57.350 68.170 111.010 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017437 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014669 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009008 0.00000