HEADER ELECTRON TRANSPORT 26-MAR-18 5ZKV TITLE SOLUTION STRUCTURE OF MOLTEN GLOBULE STATE OF L94G MUTANT OF HORSE TITLE 2 CYTOCHROME-C COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUUS CABALLUS; SOURCE 3 ORGANISM_COMMON: HORSE; SOURCE 4 ORGANISM_TAXID: 9796; SOURCE 5 GENE: CYCS, CYC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: BL21(DE3) KEYWDS STRUCTURE FROM MOLMOL, ELECTRON TRANSPORT EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR A.NAIYER,A.ISLAM,M.I.HASSAN,M.SUNDD,F.AHMAD REVDAT 3 14-JUN-23 5ZKV 1 REMARK REVDAT 2 25-NOV-20 5ZKV 1 REMARK REVDAT 1 22-MAY-19 5ZKV 0 JRNL AUTH A.NAIYER,A.ISLAM,M.I.HASSAN,M.SUNDD,F.AHMAD JRNL TITL SOLUTION STRUCTURE OF MOLTEN GLOBULE STATE OF L94G MUTANT OF JRNL TITL 2 HORSE CYTOCHROME-C JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZKV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300003247. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.03 M CACODYLATE BUFFER REMARK 210 CONTAINING 0.1 M NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2 MM [U-99% 13C; U-99% 15N] REMARK 210 MOLTEN GLOBULE OF L94G MUTANT OF REMARK 210 HORSE CYTOCHROME-C, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D C(CO) REMARK 210 NH; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700.0 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, SPARKY, CARA, REMARK 210 TALOS, CNS REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 2000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 THR A 40 O ILE A 57 1.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 13 -54.17 -7.61 REMARK 500 1 CYS A 14 -3.60 164.44 REMARK 500 1 THR A 19 158.94 50.29 REMARK 500 1 VAL A 20 -139.25 -84.65 REMARK 500 1 LEU A 32 -31.37 -174.01 REMARK 500 1 LYS A 39 -109.19 -54.52 REMARK 500 1 GLN A 42 44.29 -100.91 REMARK 500 1 ALA A 43 176.78 -54.13 REMARK 500 1 PRO A 44 -103.47 -79.59 REMARK 500 1 LYS A 55 63.06 73.39 REMARK 500 1 GLU A 69 -79.44 -61.09 REMARK 500 1 PHE A 82 165.35 86.55 REMARK 500 1 ALA A 83 89.15 142.72 REMARK 500 1 LYS A 86 -39.66 -149.78 REMARK 500 1 LYS A 87 116.42 -35.90 REMARK 500 2 LYS A 13 -54.28 -7.46 REMARK 500 2 CYS A 14 -3.58 164.49 REMARK 500 2 THR A 19 159.09 50.05 REMARK 500 2 VAL A 20 -137.22 -84.57 REMARK 500 2 LEU A 32 -31.39 -172.60 REMARK 500 2 LYS A 39 -109.13 -55.10 REMARK 500 2 GLN A 42 44.69 -100.93 REMARK 500 2 ALA A 43 177.59 -55.08 REMARK 500 2 PRO A 44 -107.49 -79.65 REMARK 500 2 LYS A 55 63.05 73.37 REMARK 500 2 GLU A 69 -79.34 -61.12 REMARK 500 2 PHE A 82 163.53 86.20 REMARK 500 2 ALA A 83 89.10 142.65 REMARK 500 2 LYS A 86 -39.69 -149.82 REMARK 500 2 LYS A 87 116.35 -35.82 REMARK 500 3 LYS A 13 -54.41 -7.35 REMARK 500 3 CYS A 14 -3.74 164.61 REMARK 500 3 THR A 19 159.01 50.25 REMARK 500 3 VAL A 20 -139.17 -84.64 REMARK 500 3 LEU A 32 -31.97 -173.66 REMARK 500 3 LYS A 39 -110.24 -54.68 REMARK 500 3 GLN A 42 44.26 -100.93 REMARK 500 3 ALA A 43 176.73 -54.00 REMARK 500 3 PRO A 44 -103.35 -79.65 REMARK 500 3 LYS A 55 62.98 73.40 REMARK 500 3 GLU A 69 -79.45 -61.08 REMARK 500 3 PHE A 82 174.01 99.27 REMARK 500 3 ALA A 83 85.08 141.47 REMARK 500 4 LYS A 13 -56.99 -12.32 REMARK 500 4 CYS A 14 5.50 -177.60 REMARK 500 4 THR A 19 158.95 50.37 REMARK 500 4 VAL A 20 -141.62 -84.60 REMARK 500 4 LEU A 32 -30.67 -175.05 REMARK 500 4 LYS A 39 -108.33 -54.64 REMARK 500 4 GLN A 42 44.19 -100.89 REMARK 500 REMARK 500 THIS ENTRY HAS 219 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 201 NA 119.8 REMARK 620 3 HEC A 201 NB 69.1 90.8 REMARK 620 4 HEC A 201 NC 68.0 171.5 89.3 REMARK 620 5 HEC A 201 ND 117.3 88.3 172.9 90.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27254 RELATED DB: BMRB REMARK 900 MOLTEN GLOBULE OF L94G MUTANT OF HORSE CYTOCHROME-C DBREF 5ZKV A 1 104 UNP P00004 CYC_HORSE 2 105 SEQADV 5ZKV GLY A 94 UNP P00004 LEU 95 ENGINEERED MUTATION SEQRES 1 A 104 GLY ASP VAL GLU LYS GLY LYS LYS ILE PHE VAL GLN LYS SEQRES 2 A 104 CYS ALA GLN CYS HIS THR VAL GLU LYS GLY GLY LYS HIS SEQRES 3 A 104 LYS THR GLY PRO ASN LEU HIS GLY LEU PHE GLY ARG LYS SEQRES 4 A 104 THR GLY GLN ALA PRO GLY PHE THR TYR THR ASP ALA ASN SEQRES 5 A 104 LYS ASN LYS GLY ILE THR TRP LYS GLU GLU THR LEU MET SEQRES 6 A 104 GLU TYR LEU GLU ASN PRO LYS LYS TYR ILE PRO GLY THR SEQRES 7 A 104 LYS MET ILE PHE ALA GLY ILE LYS LYS LYS THR GLU ARG SEQRES 8 A 104 GLU ASP GLY ILE ALA TYR LEU LYS LYS ALA THR ASN GLU HET HEC A 201 75 HETNAM HEC HEME C FORMUL 2 HEC C34 H34 FE N4 O4 HELIX 1 AA1 ASP A 2 ALA A 15 1 14 HELIX 2 AA2 GLN A 16 THR A 19 5 4 HELIX 3 AA3 THR A 49 LYS A 55 1 7 HELIX 4 AA4 LYS A 60 LEU A 68 1 9 HELIX 5 AA5 ASN A 70 ILE A 75 1 6 HELIX 6 AA6 LYS A 87 ASN A 103 1 17 LINK SG CYS A 14 CAB HEC A 201 1555 1555 1.94 LINK SG CYS A 17 CAC HEC A 201 1555 1555 1.98 LINK NE2 HIS A 18 FE HEC A 201 1555 1555 2.62 SITE 1 AC1 15 LYS A 13 CYS A 14 CYS A 17 HIS A 18 SITE 2 AC1 15 THR A 28 GLY A 29 PRO A 30 LEU A 35 SITE 3 AC1 15 GLY A 41 THR A 49 TRP A 59 THR A 78 SITE 4 AC1 15 MET A 80 ILE A 81 PHE A 82 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1