HEADER OXIDOREDUCTASE 28-MAR-18 5ZLJ TITLE CRYSTAL STRUCTURE OF COTA NATIVE ENZYME, PH8.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPORE COAT PROTEIN A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: COTA, PIG, BSU06300; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.XIE,Z.C.LIU,G.G.WANG REVDAT 4 16-OCT-24 5ZLJ 1 REMARK REVDAT 3 22-NOV-23 5ZLJ 1 REMARK REVDAT 2 29-JAN-20 5ZLJ 1 JRNL REVDAT 1 16-MAY-18 5ZLJ 0 JRNL AUTH T.XIE,Z.LIU,G.WANG JRNL TITL STRUCTURAL INSIGHT INTO THE ALLOSTERIC COUPLING OF CU1 SITE JRNL TITL 2 AND TRINUCLEAR CU CLUSTER IN COTA LACCASE. JRNL REF CHEMBIOCHEM V. 19 1502 2018 JRNL REFN ESSN 1439-7633 JRNL PMID 29722464 JRNL DOI 10.1002/CBIC.201800236 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 55800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2982 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3992 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.1770 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.2120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4054 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.047 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4225 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3933 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5749 ; 1.553 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9084 ; 0.792 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 504 ; 6.728 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;33.720 ;23.645 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 665 ;12.263 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.815 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 611 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4722 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 966 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2013 ; 1.786 ; 2.137 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2012 ; 1.785 ; 2.136 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2512 ; 2.737 ; 3.185 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2513 ; 2.737 ; 3.187 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2212 ; 2.534 ; 2.415 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2212 ; 2.533 ; 2.415 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3236 ; 3.970 ; 3.512 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5110 ; 6.767 ;18.842 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4828 ; 6.242 ;17.889 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZLJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300007283. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58806 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.23400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1GSK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30-42%(V/V) ETHYLENE GLYCOL, 100MM REMARK 280 NACL, 25MM TRIS-HCL, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.38733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 90.77467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 90.77467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.38733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 92 REMARK 465 SER A 93 REMARK 465 GLN A 94 REMARK 465 SER A 360 REMARK 465 VAL A 361 REMARK 465 GLN A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 512 REMARK 465 LYS A 513 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 113 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 136 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 370 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 187 -122.02 62.53 REMARK 500 TRP A 240 62.45 31.57 REMARK 500 ALA A 297 -5.96 79.76 REMARK 500 THR A 330 -94.43 -128.18 REMARK 500 ILE A 334 -64.24 -106.25 REMARK 500 ALA A 375 -146.63 -150.91 REMARK 500 THR A 377 -167.21 -121.05 REMARK 500 LEU A 425 -50.62 68.92 REMARK 500 TYR A 488 -162.18 -124.20 REMARK 500 TYR A 500 76.99 -157.18 REMARK 500 ASP A 501 51.43 -147.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 602 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 105 NE2 REMARK 620 2 HIS A 422 NE2 161.0 REMARK 620 3 HOH A 924 O 101.4 97.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 604 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 107 ND1 REMARK 620 2 HIS A 153 NE2 138.2 REMARK 620 3 HIS A 493 NE2 113.6 104.2 REMARK 620 4 HOH A1086 O 109.3 94.3 79.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 603 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 155 NE2 REMARK 620 2 HIS A 424 NE2 107.0 REMARK 620 3 HIS A 491 NE2 112.7 113.4 REMARK 620 4 HOH A1086 O 98.4 125.4 99.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 601 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 419 ND1 REMARK 620 2 CYS A 492 SG 125.5 REMARK 620 3 HIS A 497 ND1 107.4 123.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 614 DBREF 5ZLJ A 1 513 UNP P07788 COTA_BACSU 1 513 SEQRES 1 A 513 MET THR LEU GLU LYS PHE VAL ASP ALA LEU PRO ILE PRO SEQRES 2 A 513 ASP THR LEU LYS PRO VAL GLN GLN SER LYS GLU LYS THR SEQRES 3 A 513 TYR TYR GLU VAL THR MET GLU GLU CYS THR HIS GLN LEU SEQRES 4 A 513 HIS ARG ASP LEU PRO PRO THR ARG LEU TRP GLY TYR ASN SEQRES 5 A 513 GLY LEU PHE PRO GLY PRO THR ILE GLU VAL LYS ARG ASN SEQRES 6 A 513 GLU ASN VAL TYR VAL LYS TRP MET ASN ASN LEU PRO SER SEQRES 7 A 513 THR HIS PHE LEU PRO ILE ASP HIS THR ILE HIS HIS SER SEQRES 8 A 513 ASP SER GLN HIS GLU GLU PRO GLU VAL LYS THR VAL VAL SEQRES 9 A 513 HIS LEU HIS GLY GLY VAL THR PRO ASP ASP SER ASP GLY SEQRES 10 A 513 TYR PRO GLU ALA TRP PHE SER LYS ASP PHE GLU GLN THR SEQRES 11 A 513 GLY PRO TYR PHE LYS ARG GLU VAL TYR HIS TYR PRO ASN SEQRES 12 A 513 GLN GLN ARG GLY ALA ILE LEU TRP TYR HIS ASP HIS ALA SEQRES 13 A 513 MET ALA LEU THR ARG LEU ASN VAL TYR ALA GLY LEU VAL SEQRES 14 A 513 GLY ALA TYR ILE ILE HIS ASP PRO LYS GLU LYS ARG LEU SEQRES 15 A 513 LYS LEU PRO SER ASP GLU TYR ASP VAL PRO LEU LEU ILE SEQRES 16 A 513 THR ASP ARG THR ILE ASN GLU ASP GLY SER LEU PHE TYR SEQRES 17 A 513 PRO SER ALA PRO GLU ASN PRO SER PRO SER LEU PRO ASN SEQRES 18 A 513 PRO SER ILE VAL PRO ALA PHE CYS GLY GLU THR ILE LEU SEQRES 19 A 513 VAL ASN GLY LYS VAL TRP PRO TYR LEU GLU VAL GLU PRO SEQRES 20 A 513 ARG LYS TYR ARG PHE ARG VAL ILE ASN ALA SER ASN THR SEQRES 21 A 513 ARG THR TYR ASN LEU SER LEU ASP ASN GLY GLY ASP PHE SEQRES 22 A 513 ILE GLN ILE GLY SER ASP GLY GLY LEU LEU PRO ARG SER SEQRES 23 A 513 VAL LYS LEU ASN SER PHE SER LEU ALA PRO ALA GLU ARG SEQRES 24 A 513 TYR ASP ILE ILE ILE ASP PHE THR ALA TYR GLU GLY GLU SEQRES 25 A 513 SER ILE ILE LEU ALA ASN SER ALA GLY CYS GLY GLY ASP SEQRES 26 A 513 VAL ASN PRO GLU THR ASP ALA ASN ILE MET GLN PHE ARG SEQRES 27 A 513 VAL THR LYS PRO LEU ALA GLN LYS ASP GLU SER ARG LYS SEQRES 28 A 513 PRO LYS TYR LEU ALA SER TYR PRO SER VAL GLN HIS GLU SEQRES 29 A 513 ARG ILE GLN ASN ILE ARG THR LEU LYS LEU ALA GLY THR SEQRES 30 A 513 GLN ASP GLU TYR GLY ARG PRO VAL LEU LEU LEU ASN ASN SEQRES 31 A 513 LYS ARG TRP HIS ASP PRO VAL THR GLU THR PRO LYS VAL SEQRES 32 A 513 GLY THR THR GLU ILE TRP SER ILE ILE ASN PRO THR ARG SEQRES 33 A 513 GLY THR HIS PRO ILE HIS LEU HIS LEU VAL SER PHE ARG SEQRES 34 A 513 VAL LEU ASP ARG ARG PRO PHE ASP ILE ALA ARG TYR GLN SEQRES 35 A 513 GLU SER GLY GLU LEU SER TYR THR GLY PRO ALA VAL PRO SEQRES 36 A 513 PRO PRO PRO SER GLU LYS GLY TRP LYS ASP THR ILE GLN SEQRES 37 A 513 ALA HIS ALA GLY GLU VAL LEU ARG ILE ALA ALA THR PHE SEQRES 38 A 513 GLY PRO TYR SER GLY ARG TYR VAL TRP HIS CYS HIS ILE SEQRES 39 A 513 LEU GLU HIS GLU ASP TYR ASP MET MET ARG PRO MET ASP SEQRES 40 A 513 ILE THR ASP PRO HIS LYS HET CU A 601 1 HET CU A 602 1 HET CU A 603 1 HET CU A 604 1 HET GOL A 605 6 HET EDO A 606 4 HET EDO A 607 4 HET EDO A 608 4 HET EDO A 609 4 HET EDO A 610 4 HET EDO A 611 4 HET EDO A 612 4 HET EDO A 613 4 HET EDO A 614 4 HETNAM CU COPPER (II) ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CU 4(CU 2+) FORMUL 6 GOL C3 H8 O3 FORMUL 7 EDO 9(C2 H6 O2) FORMUL 16 HOH *530(H2 O) HELIX 1 AA1 PRO A 112 ASP A 116 5 5 HELIX 2 AA2 SER A 124 GLU A 128 5 5 HELIX 3 AA3 LEU A 159 ALA A 166 1 8 HELIX 4 AA4 ASP A 176 LYS A 183 5 8 HELIX 5 AA5 SER A 186 GLU A 188 5 3 HELIX 6 AA6 THR A 307 GLU A 310 5 4 HELIX 7 AA7 ASP A 437 GLY A 445 1 9 HELIX 8 AA8 PRO A 457 LYS A 461 5 5 HELIX 9 AA9 ILE A 494 ASP A 499 1 6 SHEET 1 AA1 3 GLN A 20 GLN A 21 0 SHEET 2 AA1 3 THR A 26 HIS A 37 -1 O TYR A 27 N GLN A 20 SHEET 3 AA1 3 THR A 46 TYR A 51 -1 O THR A 46 N HIS A 37 SHEET 1 AA2 4 GLN A 20 GLN A 21 0 SHEET 2 AA2 4 THR A 26 HIS A 37 -1 O TYR A 27 N GLN A 20 SHEET 3 AA2 4 VAL A 68 ASN A 74 1 O MET A 73 N MET A 32 SHEET 4 AA2 4 VAL A 138 TYR A 141 -1 O TYR A 141 N VAL A 68 SHEET 1 AA3 4 ILE A 60 LYS A 63 0 SHEET 2 AA3 4 VAL A 169 HIS A 175 1 O HIS A 175 N VAL A 62 SHEET 3 AA3 4 ALA A 148 ASP A 154 -1 N TYR A 152 O GLY A 170 SHEET 4 AA3 4 VAL A 104 HIS A 107 -1 N HIS A 105 O HIS A 153 SHEET 1 AA4 4 LEU A 206 PHE A 207 0 SHEET 2 AA4 4 ASP A 190 ILE A 200 -1 N THR A 199 O PHE A 207 SHEET 3 AA4 4 THR A 232 VAL A 235 -1 O THR A 232 N ARG A 198 SHEET 4 AA4 4 LYS A 238 VAL A 239 -1 O LYS A 238 N VAL A 235 SHEET 1 AA5 6 LEU A 206 PHE A 207 0 SHEET 2 AA5 6 ASP A 190 ILE A 200 -1 N THR A 199 O PHE A 207 SHEET 3 AA5 6 LYS A 249 ASN A 256 1 O ARG A 253 N LEU A 193 SHEET 4 AA5 6 ARG A 299 ASP A 305 -1 O TYR A 300 N VAL A 254 SHEET 5 AA5 6 PHE A 273 SER A 278 -1 N ILE A 276 O ASP A 301 SHEET 6 AA5 6 GLY A 281 LEU A 289 -1 O LEU A 289 N PHE A 273 SHEET 1 AA6 5 TYR A 242 GLU A 244 0 SHEET 2 AA6 5 ASN A 333 ARG A 338 1 O GLN A 336 N LEU A 243 SHEET 3 AA6 5 SER A 313 ASN A 318 -1 N ILE A 314 O PHE A 337 SHEET 4 AA6 5 TYR A 263 LEU A 267 -1 N SER A 266 O ALA A 317 SHEET 5 AA6 5 PHE A 292 LEU A 294 -1 O LEU A 294 N TYR A 263 SHEET 1 AA7 5 PRO A 384 LEU A 388 0 SHEET 2 AA7 5 ILE A 366 GLN A 378 -1 N THR A 377 O VAL A 385 SHEET 3 AA7 5 THR A 406 ASN A 413 1 O ILE A 412 N LEU A 372 SHEET 4 AA7 5 GLU A 473 THR A 480 -1 O LEU A 475 N ILE A 411 SHEET 5 AA7 5 ARG A 429 PRO A 435 -1 N ASP A 432 O ARG A 476 SHEET 1 AA8 4 THR A 466 ALA A 469 0 SHEET 2 AA8 4 HIS A 419 LEU A 423 -1 N ILE A 421 O ILE A 467 SHEET 3 AA8 4 GLY A 486 CYS A 492 -1 O HIS A 491 N HIS A 422 SHEET 4 AA8 4 MET A 503 ILE A 508 -1 O MET A 506 N TYR A 488 SSBOND 1 CYS A 229 CYS A 322 1555 1555 2.06 LINK NE2 HIS A 105 CU CU A 602 1555 1555 1.83 LINK ND1 HIS A 107 CU CU A 604 1555 1555 1.91 LINK NE2 HIS A 153 CU CU A 604 1555 1555 2.06 LINK NE2 HIS A 155 CU CU A 603 1555 1555 2.12 LINK ND1 HIS A 419 CU CU A 601 1555 1555 2.12 LINK NE2 HIS A 422 CU CU A 602 1555 1555 1.73 LINK NE2 HIS A 424 CU CU A 603 1555 1555 2.03 LINK NE2 HIS A 491 CU CU A 603 1555 1555 1.96 LINK SG CYS A 492 CU CU A 601 1555 1555 2.19 LINK NE2 HIS A 493 CU CU A 604 1555 1555 2.28 LINK ND1 HIS A 497 CU CU A 601 1555 1555 2.09 LINK CU CU A 602 O HOH A 924 1555 1555 2.61 LINK CU CU A 603 O HOH A1086 1555 1555 2.05 LINK CU CU A 604 O HOH A1086 1555 1555 2.53 CISPEP 1 PHE A 55 PRO A 56 0 -5.09 CISPEP 2 ASN A 221 PRO A 222 0 3.34 CISPEP 3 GLY A 482 PRO A 483 0 2.00 CISPEP 4 TYR A 500 ASP A 501 0 1.41 SITE 1 AC1 4 HIS A 419 CYS A 492 HIS A 497 MET A 502 SITE 1 AC2 5 HIS A 105 HIS A 107 HIS A 422 HIS A 424 SITE 2 AC2 5 HOH A 924 SITE 1 AC3 5 HIS A 155 HIS A 422 HIS A 424 HIS A 491 SITE 2 AC3 5 HOH A1086 SITE 1 AC4 4 HIS A 107 HIS A 153 HIS A 493 HOH A1086 SITE 1 AC5 8 ASP A 113 ASP A 114 TYR A 118 ALA A 121 SITE 2 AC5 8 TYR A 133 LYS A 135 ARG A 487 HOH A1040 SITE 1 AC6 6 GLU A 188 GLU A 244 TYR A 250 EDO A 610 SITE 2 AC6 6 HOH A 710 HOH A 741 SITE 1 AC7 7 PHE A 292 SER A 293 TYR A 300 PRO A 457 SITE 2 AC7 7 EDO A 609 HOH A 785 HOH A 799 SITE 1 AC8 6 ASP A 268 PRO A 328 ALA A 332 ASN A 333 SITE 2 AC8 6 HOH A 751 HOH A 841 SITE 1 AC9 4 HIS A 470 EDO A 607 HOH A 785 HOH A 988 SITE 1 AD1 6 GLU A 188 TYR A 189 GLU A 246 LYS A 341 SITE 2 AD1 6 EDO A 606 HOH A 749 SITE 1 AD2 6 ASP A 113 ASP A 114 LYS A 135 PRO A 342 SITE 2 AD2 6 LEU A 343 HOH A 804 SITE 1 AD3 8 ARG A 136 GLU A 137 VAL A 138 PRO A 247 SITE 2 AD3 8 THR A 307 EDO A 613 HOH A 886 HOH A1043 SITE 1 AD4 9 TYR A 69 VAL A 138 THR A 307 ALA A 308 SITE 2 AD4 9 TYR A 309 GLU A 310 EDO A 612 HOH A 778 SITE 3 AD4 9 HOH A 978 SITE 1 AD5 8 GLY A 108 ALA A 148 LEU A 150 ASP A 279 SITE 2 AD5 8 GLY A 280 SER A 427 ASP A 465 HOH A 892 CRYST1 101.897 101.897 136.162 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009814 0.005666 0.000000 0.00000 SCALE2 0.000000 0.011332 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007344 0.00000