HEADER HYDROLASE 06-APR-18 5ZMV TITLE CRYSTAL STRUCTURE OF THE E309A MUTANT OF SR CA2+-ATPASE IN E2(TG) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SR CA(2+)-ATPASE 1,CALCIUM PUMP 1,CALCIUM-TRANSPORTING COMPND 5 ATPASE SARCOPLASMIC RETICULUM TYPE,FAST TWITCH SKELETAL MUSCLE COMPND 6 ISOFORM,ENDOPLASMIC RETICULUM CLASS 1/2 CA(2+) ATPASE; COMPND 7 EC: 3.6.3.8; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 GENE: ATP2A1; SOURCE 6 EXPRESSION_SYSTEM: CHLOROCEBUS SABAEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 60711; SOURCE 8 EXPRESSION_SYSTEM_CELL: COS-7 KEYWDS MEMBRANE PROTEIN, P-TYPE ATPASE, HAD FOLD, ATP-BINDING, CALCIUM KEYWDS 2 TRANSPORT, ENDOPLASMIC RETICULUM, ION TRANSPORT, MAGNESIUM, METAL- KEYWDS 3 BINDING, NUCLEOTIDE-BINDING, PHOSPHORYLATION, SARCOPLASMIC KEYWDS 4 RETICULUM, TRANSMEMBRANE, TRANSPORT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.OGAWA,A.HIRATA,J.TSUEDA,C.TOYOSHIMA REVDAT 2 26-DEC-18 5ZMV 1 JRNL REVDAT 1 12-DEC-18 5ZMV 0 JRNL AUTH N.TSUNEKAWA,H.OGAWA,J.TSUEDA,T.AKIBA,C.TOYOSHIMA JRNL TITL MECHANISM OF THE E2 TO E1 TRANSITION IN CA2+PUMP REVEALED BY JRNL TITL 2 CRYSTAL STRUCTURES OF GATING RESIDUE MUTANTS. JRNL REF PROC. NATL. ACAD. SCI. V. 115 12722 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30482857 JRNL DOI 10.1073/PNAS.1815472115 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2341) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 23965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.090 REMARK 3 FREE R VALUE TEST SET COUNT : 740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 15.9761 - 5.5781 1.00 4939 151 0.1748 0.1994 REMARK 3 2 5.5781 - 4.4592 1.00 4674 156 0.1871 0.2228 REMARK 3 3 4.4592 - 3.9050 1.00 4607 146 0.1889 0.2265 REMARK 3 4 3.9050 - 3.5522 1.00 4551 147 0.2256 0.2910 REMARK 3 5 3.5522 - 3.3000 0.98 4454 140 0.2583 0.3059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7953 REMARK 3 ANGLE : 0.445 10791 REMARK 3 CHIRALITY : 0.038 1257 REMARK 3 PLANARITY : 0.003 1373 REMARK 3 DIHEDRAL : 11.306 4799 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3795 -4.7814 34.0255 REMARK 3 T TENSOR REMARK 3 T11: 0.6068 T22: 1.0848 REMARK 3 T33: 0.8256 T12: 0.0057 REMARK 3 T13: -0.1735 T23: 0.1491 REMARK 3 L TENSOR REMARK 3 L11: 0.2517 L22: 0.9178 REMARK 3 L33: 3.7921 L12: -0.3137 REMARK 3 L13: 0.9978 L23: -1.5748 REMARK 3 S TENSOR REMARK 3 S11: -0.2462 S12: -0.2520 S13: 0.2035 REMARK 3 S21: 0.0183 S22: 0.3958 S23: 0.2881 REMARK 3 S31: -0.5353 S32: -1.2401 S33: -0.0650 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 780 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3633 -3.1288 23.5768 REMARK 3 T TENSOR REMARK 3 T11: 0.5264 T22: 0.6877 REMARK 3 T33: 0.7021 T12: -0.2283 REMARK 3 T13: -0.1763 T23: 0.1857 REMARK 3 L TENSOR REMARK 3 L11: 0.5694 L22: 0.7007 REMARK 3 L33: 5.4303 L12: 0.1377 REMARK 3 L13: -0.4899 L23: -1.3203 REMARK 3 S TENSOR REMARK 3 S11: -0.1284 S12: 0.1583 S13: 0.2135 REMARK 3 S21: -0.1680 S22: 0.0597 S23: 0.1359 REMARK 3 S31: -0.2136 S32: 0.1591 S33: 0.0278 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 781 THROUGH 994 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.9819 -14.1609 75.7346 REMARK 3 T TENSOR REMARK 3 T11: 0.6058 T22: 0.8762 REMARK 3 T33: 0.5195 T12: 0.0282 REMARK 3 T13: -0.1513 T23: 0.1544 REMARK 3 L TENSOR REMARK 3 L11: 2.0626 L22: 2.6689 REMARK 3 L33: 3.2099 L12: -0.1025 REMARK 3 L13: -0.0951 L23: 0.5732 REMARK 3 S TENSOR REMARK 3 S11: -0.1862 S12: -0.5113 S13: 0.0456 REMARK 3 S21: 0.5441 S22: -0.0919 S23: -0.1256 REMARK 3 S31: 0.3197 S32: 0.9884 S33: 0.2881 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZMV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300007342. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23965 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.41 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 294.59350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.60000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 147.29675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.60000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 441.89025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.60000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.60000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 147.29675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.60000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.60000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 441.89025 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 294.59350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A -3 49.18 -148.10 REMARK 500 ALA A -2 -94.41 -82.81 REMARK 500 ALA A 0 -165.60 65.34 REMARK 500 GLU A 2 -91.39 -67.38 REMARK 500 LYS A 47 108.82 -58.95 REMARK 500 TRP A 77 -60.27 -95.73 REMARK 500 ALA A 87 -63.22 -105.36 REMARK 500 GLN A 177 36.04 -87.47 REMARK 500 THR A 181 -135.92 -82.20 REMARK 500 ARG A 198 53.38 -102.33 REMARK 500 LYS A 204 68.76 -68.37 REMARK 500 ALA A 224 -65.16 -91.15 REMARK 500 ASN A 275 39.98 -98.63 REMARK 500 THR A 355 -63.66 -108.98 REMARK 500 PRO A 391 42.07 -76.08 REMARK 500 ASN A 453 70.87 55.56 REMARK 500 GLU A 458 92.15 -61.91 REMARK 500 SER A 463 -164.60 -75.84 REMARK 500 LEU A 478 -73.19 -76.07 REMARK 500 SER A 503 80.47 -164.94 REMARK 500 THR A 538 -161.32 -105.20 REMARK 500 THR A 569 76.62 -119.36 REMARK 500 GLU A 588 39.40 -93.08 REMARK 500 VAL A 594 -66.31 -107.16 REMARK 500 ASN A 645 32.32 -140.31 REMARK 500 ASP A 703 -13.10 -150.56 REMARK 500 ASP A 738 19.40 59.08 REMARK 500 MET A 857 -76.88 -114.11 REMARK 500 TYR A 858 51.28 -91.83 REMARK 500 GLU A 878 -70.05 -93.09 REMARK 500 TYR A 949 -38.13 -136.00 REMARK 500 LEU A 992 -15.12 -142.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PTY A 2005 REMARK 610 PTY A 2006 REMARK 610 PTY A 2007 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A2003 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 244 OE1 REMARK 620 2 LEU A 711 O 147.7 REMARK 620 3 LYS A 712 O 66.0 81.8 REMARK 620 4 GLU A 732 OE1 118.5 91.9 156.0 REMARK 620 5 GLU A 732 OE2 75.4 136.9 141.4 49.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TG1 A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PTY A 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PTY A 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PTY A 2007 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE OF THE PROTEIN WAS BASED ON ISOFORM SERCA1A (P04191-2) OF REMARK 999 DATABASE AT2A1_RABIT. DBREF 5ZMV A 1 994 UNP P04191 AT2A1_RABIT 1 994 SEQADV 5ZMV SER A -5 UNP P04191 EXPRESSION TAG SEQADV 5ZMV ASP A -4 UNP P04191 EXPRESSION TAG SEQADV 5ZMV ASN A -3 UNP P04191 EXPRESSION TAG SEQADV 5ZMV ALA A -2 UNP P04191 EXPRESSION TAG SEQADV 5ZMV ILE A -1 UNP P04191 EXPRESSION TAG SEQADV 5ZMV ALA A 0 UNP P04191 EXPRESSION TAG SEQADV 5ZMV ALA A 309 UNP P04191 GLU 309 ENGINEERED MUTATION SEQRES 1 A 1000 SER ASP ASN ALA ILE ALA MET GLU ALA ALA HIS SER LYS SEQRES 2 A 1000 SER THR GLU GLU CYS LEU ALA TYR PHE GLY VAL SER GLU SEQRES 3 A 1000 THR THR GLY LEU THR PRO ASP GLN VAL LYS ARG HIS LEU SEQRES 4 A 1000 GLU LYS TYR GLY HIS ASN GLU LEU PRO ALA GLU GLU GLY SEQRES 5 A 1000 LYS SER LEU TRP GLU LEU VAL ILE GLU GLN PHE GLU ASP SEQRES 6 A 1000 LEU LEU VAL ARG ILE LEU LEU LEU ALA ALA CYS ILE SER SEQRES 7 A 1000 PHE VAL LEU ALA TRP PHE GLU GLU GLY GLU GLU THR ILE SEQRES 8 A 1000 THR ALA PHE VAL GLU PRO PHE VAL ILE LEU LEU ILE LEU SEQRES 9 A 1000 ILE ALA ASN ALA ILE VAL GLY VAL TRP GLN GLU ARG ASN SEQRES 10 A 1000 ALA GLU ASN ALA ILE GLU ALA LEU LYS GLU TYR GLU PRO SEQRES 11 A 1000 GLU MET GLY LYS VAL TYR ARG ALA ASP ARG LYS SER VAL SEQRES 12 A 1000 GLN ARG ILE LYS ALA ARG ASP ILE VAL PRO GLY ASP ILE SEQRES 13 A 1000 VAL GLU VAL ALA VAL GLY ASP LYS VAL PRO ALA ASP ILE SEQRES 14 A 1000 ARG ILE LEU SER ILE LYS SER THR THR LEU ARG VAL ASP SEQRES 15 A 1000 GLN SER ILE LEU THR GLY GLU SER VAL SER VAL ILE LYS SEQRES 16 A 1000 HIS THR GLU PRO VAL PRO ASP PRO ARG ALA VAL ASN GLN SEQRES 17 A 1000 ASP LYS LYS ASN MET LEU PHE SER GLY THR ASN ILE ALA SEQRES 18 A 1000 ALA GLY LYS ALA LEU GLY ILE VAL ALA THR THR GLY VAL SEQRES 19 A 1000 SER THR GLU ILE GLY LYS ILE ARG ASP GLN MET ALA ALA SEQRES 20 A 1000 THR GLU GLN ASP LYS THR PRO LEU GLN GLN LYS LEU ASP SEQRES 21 A 1000 GLU PHE GLY GLU GLN LEU SER LYS VAL ILE SER LEU ILE SEQRES 22 A 1000 CYS VAL ALA VAL TRP LEU ILE ASN ILE GLY HIS PHE ASN SEQRES 23 A 1000 ASP PRO VAL HIS GLY GLY SER TRP ILE ARG GLY ALA ILE SEQRES 24 A 1000 TYR TYR PHE LYS ILE ALA VAL ALA LEU ALA VAL ALA ALA SEQRES 25 A 1000 ILE PRO ALA GLY LEU PRO ALA VAL ILE THR THR CYS LEU SEQRES 26 A 1000 ALA LEU GLY THR ARG ARG MET ALA LYS LYS ASN ALA ILE SEQRES 27 A 1000 VAL ARG SER LEU PRO SER VAL GLU THR LEU GLY CYS THR SEQRES 28 A 1000 SER VAL ILE CYS SER ASP LYS THR GLY THR LEU THR THR SEQRES 29 A 1000 ASN GLN MET SER VAL CYS LYS MET PHE ILE ILE ASP LYS SEQRES 30 A 1000 VAL ASP GLY ASP PHE CYS SER LEU ASN GLU PHE SER ILE SEQRES 31 A 1000 THR GLY SER THR TYR ALA PRO GLU GLY GLU VAL LEU LYS SEQRES 32 A 1000 ASN ASP LYS PRO ILE ARG SER GLY GLN PHE ASP GLY LEU SEQRES 33 A 1000 VAL GLU LEU ALA THR ILE CYS ALA LEU CYS ASN ASP SER SEQRES 34 A 1000 SER LEU ASP PHE ASN GLU THR LYS GLY VAL TYR GLU LYS SEQRES 35 A 1000 VAL GLY GLU ALA THR GLU THR ALA LEU THR THR LEU VAL SEQRES 36 A 1000 GLU LYS MET ASN VAL PHE ASN THR GLU VAL ARG ASN LEU SEQRES 37 A 1000 SER LYS VAL GLU ARG ALA ASN ALA CYS ASN SER VAL ILE SEQRES 38 A 1000 ARG GLN LEU MET LYS LYS GLU PHE THR LEU GLU PHE SER SEQRES 39 A 1000 ARG ASP ARG LYS SER MET SER VAL TYR CYS SER PRO ALA SEQRES 40 A 1000 LYS SER SER ARG ALA ALA VAL GLY ASN LYS MET PHE VAL SEQRES 41 A 1000 LYS GLY ALA PRO GLU GLY VAL ILE ASP ARG CYS ASN TYR SEQRES 42 A 1000 VAL ARG VAL GLY THR THR ARG VAL PRO MET THR GLY PRO SEQRES 43 A 1000 VAL LYS GLU LYS ILE LEU SER VAL ILE LYS GLU TRP GLY SEQRES 44 A 1000 THR GLY ARG ASP THR LEU ARG CYS LEU ALA LEU ALA THR SEQRES 45 A 1000 ARG ASP THR PRO PRO LYS ARG GLU GLU MET VAL LEU ASP SEQRES 46 A 1000 ASP SER SER ARG PHE MET GLU TYR GLU THR ASP LEU THR SEQRES 47 A 1000 PHE VAL GLY VAL VAL GLY MET LEU ASP PRO PRO ARG LYS SEQRES 48 A 1000 GLU VAL MET GLY SER ILE GLN LEU CYS ARG ASP ALA GLY SEQRES 49 A 1000 ILE ARG VAL ILE MET ILE THR GLY ASP ASN LYS GLY THR SEQRES 50 A 1000 ALA ILE ALA ILE CYS ARG ARG ILE GLY ILE PHE GLY GLU SEQRES 51 A 1000 ASN GLU GLU VAL ALA ASP ARG ALA TYR THR GLY ARG GLU SEQRES 52 A 1000 PHE ASP ASP LEU PRO LEU ALA GLU GLN ARG GLU ALA CYS SEQRES 53 A 1000 ARG ARG ALA CYS CYS PHE ALA ARG VAL GLU PRO SER HIS SEQRES 54 A 1000 LYS SER LYS ILE VAL GLU TYR LEU GLN SER TYR ASP GLU SEQRES 55 A 1000 ILE THR ALA MET THR GLY ASP GLY VAL ASN ASP ALA PRO SEQRES 56 A 1000 ALA LEU LYS LYS ALA GLU ILE GLY ILE ALA MET GLY SER SEQRES 57 A 1000 GLY THR ALA VAL ALA LYS THR ALA SER GLU MET VAL LEU SEQRES 58 A 1000 ALA ASP ASP ASN PHE SER THR ILE VAL ALA ALA VAL GLU SEQRES 59 A 1000 GLU GLY ARG ALA ILE TYR ASN ASN MET LYS GLN PHE ILE SEQRES 60 A 1000 ARG TYR LEU ILE SER SER ASN VAL GLY GLU VAL VAL CYS SEQRES 61 A 1000 ILE PHE LEU THR ALA ALA LEU GLY LEU PRO GLU ALA LEU SEQRES 62 A 1000 ILE PRO VAL GLN LEU LEU TRP VAL ASN LEU VAL THR ASP SEQRES 63 A 1000 GLY LEU PRO ALA THR ALA LEU GLY PHE ASN PRO PRO ASP SEQRES 64 A 1000 LEU ASP ILE MET ASP ARG PRO PRO ARG SER PRO LYS GLU SEQRES 65 A 1000 PRO LEU ILE SER GLY TRP LEU PHE PHE ARG TYR MET ALA SEQRES 66 A 1000 ILE GLY GLY TYR VAL GLY ALA ALA THR VAL GLY ALA ALA SEQRES 67 A 1000 ALA TRP TRP PHE MET TYR ALA GLU ASP GLY PRO GLY VAL SEQRES 68 A 1000 THR TYR HIS GLN LEU THR HIS PHE MET GLN CYS THR GLU SEQRES 69 A 1000 ASP HIS PRO HIS PHE GLU GLY LEU ASP CYS GLU ILE PHE SEQRES 70 A 1000 GLU ALA PRO GLU PRO MET THR MET ALA LEU SER VAL LEU SEQRES 71 A 1000 VAL THR ILE GLU MET CYS ASN ALA LEU ASN SER LEU SER SEQRES 72 A 1000 GLU ASN GLN SER LEU MET ARG MET PRO PRO TRP VAL ASN SEQRES 73 A 1000 ILE TRP LEU LEU GLY SER ILE CYS LEU SER MET SER LEU SEQRES 74 A 1000 HIS PHE LEU ILE LEU TYR VAL ASP PRO LEU PRO MET ILE SEQRES 75 A 1000 PHE LYS LEU LYS ALA LEU ASP LEU THR GLN TRP LEU MET SEQRES 76 A 1000 VAL LEU LYS ILE SER LEU PRO VAL ILE GLY LEU ASP GLU SEQRES 77 A 1000 ILE LEU LYS PHE ILE ALA ARG ASN TYR LEU GLU GLY HET SO4 A2001 5 HET SO4 A2002 5 HET NA A2003 1 HET TG1 A2004 46 HET PTY A2005 19 HET PTY A2006 19 HET PTY A2007 19 HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM TG1 OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, 6BETA, HETNAM 2 TG1 6ABETA, 7BETA, 8ALPHA(Z), 9BALPHA]]-6-(ACETYLOXY)-2,3, HETNAM 3 TG1 -3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9- HETNAM 4 TG1 TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OXY]-2-OXO-4- HETNAM 5 TG1 (1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER HETNAM PTY PHOSPHATIDYLETHANOLAMINE HETSYN TG1 THAPSIGARGIN FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 NA NA 1+ FORMUL 5 TG1 C34 H50 O12 FORMUL 6 PTY 3(C40 H80 N O8 P) HELIX 1 AA1 SER A 8 GLY A 17 1 10 HELIX 2 AA2 THR A 25 GLY A 37 1 13 HELIX 3 AA3 SER A 48 GLN A 56 1 9 HELIX 4 AA4 ASP A 59 PHE A 78 1 20 HELIX 5 AA5 GLU A 83 ALA A 87 5 5 HELIX 6 AA6 PHE A 88 ALA A 112 1 25 HELIX 7 AA7 ASN A 114 LEU A 119 1 6 HELIX 8 AA8 LYS A 120 GLU A 123 5 4 HELIX 9 AA9 ARG A 143 ILE A 145 5 3 HELIX 10 AB1 GLN A 177 LEU A 180 5 4 HELIX 11 AB2 THR A 226 SER A 229 5 4 HELIX 12 AB3 THR A 230 THR A 242 1 13 HELIX 13 AB4 THR A 247 ASN A 275 1 29 HELIX 14 AB5 ILE A 276 ASP A 281 5 6 HELIX 15 AB6 SER A 287 ILE A 307 1 21 HELIX 16 AB7 GLY A 310 LYS A 329 1 20 HELIX 17 AB8 PRO A 337 CYS A 344 1 8 HELIX 18 AB9 ARG A 403 GLN A 406 5 4 HELIX 19 AC1 PHE A 407 CYS A 420 1 14 HELIX 20 AC2 GLU A 439 ASN A 453 1 15 HELIX 21 AC3 ASN A 469 GLN A 477 1 9 HELIX 22 AC4 ALA A 517 ARG A 524 1 8 HELIX 23 AC5 THR A 538 GLY A 555 1 18 HELIX 24 AC6 ASP A 580 SER A 582 5 3 HELIX 25 AC7 ARG A 583 GLU A 588 1 6 HELIX 26 AC8 GLU A 606 ALA A 617 1 12 HELIX 27 AC9 ASN A 628 GLY A 640 1 13 HELIX 28 AD1 GLY A 655 LEU A 661 1 7 HELIX 29 AD2 PRO A 662 ARG A 671 1 10 HELIX 30 AD3 SER A 682 TYR A 694 1 13 HELIX 31 AD4 GLY A 704 ASN A 706 5 3 HELIX 32 AD5 ASP A 707 ALA A 714 1 8 HELIX 33 AD6 THR A 724 ALA A 730 1 7 HELIX 34 AD7 ASN A 739 LEU A 781 1 43 HELIX 35 AD8 ILE A 788 VAL A 798 1 11 HELIX 36 AD9 ASP A 800 GLY A 808 1 9 HELIX 37 AE1 ASP A 815 ARG A 819 5 5 HELIX 38 AE2 SER A 830 TYR A 858 1 29 HELIX 39 AE3 THR A 866 THR A 871 1 6 HELIX 40 AE4 HIS A 872 CYS A 876 5 5 HELIX 41 AE5 HIS A 880 GLU A 884 5 5 HELIX 42 AE6 ASP A 887 GLU A 892 5 6 HELIX 43 AE7 ALA A 893 SER A 915 1 23 HELIX 44 AE8 PRO A 926 VAL A 929 5 4 HELIX 45 AE9 ASN A 930 VAL A 950 1 21 HELIX 46 AF1 ASP A 951 PHE A 957 1 7 HELIX 47 AF2 ASP A 963 LEU A 975 1 13 HELIX 48 AF3 PRO A 976 TYR A 991 1 16 SHEET 1 AA1 6 GLN A 138 LYS A 141 0 SHEET 2 AA1 6 MET A 126 TYR A 130 -1 N GLY A 127 O ILE A 140 SHEET 3 AA1 6 ILE A 150 ALA A 154 -1 O GLU A 152 N LYS A 128 SHEET 4 AA1 6 LYS A 218 THR A 225 -1 O GLY A 221 N VAL A 151 SHEET 5 AA1 6 ASP A 162 ILE A 168 -1 N SER A 167 O LEU A 220 SHEET 6 AA1 6 MET A 207 LEU A 208 -1 O LEU A 208 N ILE A 163 SHEET 1 AA2 3 VAL A 187 ILE A 188 0 SHEET 2 AA2 3 ARG A 174 ASP A 176 -1 N VAL A 175 O VAL A 187 SHEET 3 AA2 3 ASN A 213 ALA A 216 -1 O ASN A 213 N ASP A 176 SHEET 1 AA3 8 ALA A 331 VAL A 333 0 SHEET 2 AA3 8 MET A 733 LEU A 735 -1 O VAL A 734 N ILE A 332 SHEET 3 AA3 8 ILE A 716 MET A 720 1 N ALA A 719 O LEU A 735 SHEET 4 AA3 8 THR A 698 GLY A 702 1 N MET A 700 O ILE A 718 SHEET 5 AA3 8 VAL A 347 ASP A 351 1 N VAL A 347 O ALA A 699 SHEET 6 AA3 8 ARG A 620 THR A 625 1 O ILE A 622 N ILE A 348 SHEET 7 AA3 8 CYS A 675 ALA A 677 1 O PHE A 676 N MET A 623 SHEET 8 AA3 8 ALA A 652 THR A 654 1 N TYR A 653 O ALA A 677 SHEET 1 AA4 8 VAL A 395 LEU A 396 0 SHEET 2 AA4 8 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 3 AA4 8 SER A 362 ASP A 373 -1 N MET A 366 O PHE A 382 SHEET 4 AA4 8 LEU A 591 LEU A 600 -1 O GLY A 598 N LYS A 365 SHEET 5 AA4 8 ARG A 560 ARG A 567 -1 N ARG A 560 O MET A 599 SHEET 6 AA4 8 LYS A 511 GLY A 516 -1 N MET A 512 O ARG A 567 SHEET 7 AA4 8 SER A 493 PRO A 500 -1 N CYS A 498 O LYS A 511 SHEET 8 AA4 8 MET A 479 LEU A 485 -1 N LYS A 480 O SER A 499 SHEET 1 AA5 6 VAL A 395 LEU A 396 0 SHEET 2 AA5 6 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 3 AA5 6 SER A 362 ASP A 373 -1 N MET A 366 O PHE A 382 SHEET 4 AA5 6 LEU A 591 LEU A 600 -1 O GLY A 598 N LYS A 365 SHEET 5 AA5 6 CYS A 525 VAL A 530 1 N ARG A 529 O PHE A 593 SHEET 6 AA5 6 THR A 533 PRO A 536 -1 O VAL A 535 N VAL A 528 SHEET 1 AA6 2 SER A 424 PHE A 427 0 SHEET 2 AA6 2 TYR A 434 VAL A 437 -1 O GLU A 435 N ASP A 426 SSBOND 1 CYS A 876 CYS A 888 1555 1555 2.04 LINK OE1 GLN A 244 NA NA A2003 1555 1555 2.59 LINK O LEU A 711 NA NA A2003 1555 1555 2.67 LINK O LYS A 712 NA NA A2003 1555 1555 2.81 LINK OE1 GLU A 732 NA NA A2003 1555 1555 2.73 LINK OE2 GLU A 732 NA NA A2003 1555 1555 2.47 SITE 1 AC1 3 THR A 353 THR A 625 GLY A 626 SITE 1 AC2 2 ALA A 517 ARG A 678 SITE 1 AC3 6 GLN A 244 LEU A 711 LYS A 712 ALA A 714 SITE 2 AC3 6 ALA A 730 GLU A 732 SITE 1 AC4 12 LEU A 253 GLU A 255 PHE A 256 LEU A 260 SITE 2 AC4 12 VAL A 263 ILE A 765 VAL A 769 LEU A 828 SITE 3 AC4 12 ILE A 829 PHE A 834 TYR A 837 MET A 838 SITE 1 AC5 2 ASN A 101 THR A 316 SITE 1 AC6 5 SER A 921 MET A 923 PHE A 986 ARG A 989 SITE 2 AC6 5 ASN A 990 SITE 1 AC7 6 ILE A 274 ASN A 275 ALA A 780 LEU A 922 SITE 2 AC7 6 MET A 923 TRP A 928 CRYST1 71.200 71.200 589.187 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014045 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014045 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001697 0.00000