HEADER CELL ADHESION 12-APR-18 5ZO1 TITLE CRYSTAL STRUCTURE OF MOUSE NECTIN-LIKE MOLECULE 4 (MNECL-4) FULL TITLE 2 ECTODOMAIN (IG1-IG3), 2.2A COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL ADHESION MOLECULE 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ECTODOMAIN IG1-IG3; COMPND 5 SYNONYM: IMMUNOGLOBULIN SUPERFAMILY MEMBER 4C,IGSF4C,NECTIN-LIKE COMPND 6 PROTEIN 4,NECL-4,TSLC1-LIKE PROTEIN 2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 ORGAN: BRAIN, KIDNEY, AND SPLEEN; SOURCE 6 TISSUE: BRAIN, KIDNEY, AND SPLEEN; SOURCE 7 GENE: CADM4, IGSF4C, NECL4, TSLL2; SOURCE 8 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFAST-BAC1 KEYWDS CELL ADHESION MOLECULE, GLYCOPROTEIN, IG-LIKE DOMAIN, NECL4, NECL, KEYWDS 2 NECTIN, NECTIN-LIKE MOLECULES, CADM, NATIVE-SAD, DISULFIDE BRIDGES, KEYWDS 3 SYNCAM4, SCHWANN CELL, MYELOGENESIS, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR X.LIU,T.AN,D.LI,Z.FAN,P.XIANG,C.LI,W.JU,J.LI,G.HU,B.QIN,B.YIN, AUTHOR 2 J.A.WOJDYLA,M.WANG,J.YUAN,B.QIANG,P.SHU,S.CUI,X.PENG REVDAT 5 06-NOV-24 5ZO1 1 HETSYN LINK REVDAT 4 29-JUL-20 5ZO1 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 20-FEB-19 5ZO1 1 JRNL REVDAT 2 06-FEB-19 5ZO1 1 JRNL REVDAT 1 30-JAN-19 5ZO1 0 JRNL AUTH X.LIU,T.AN,D.LI,Z.FAN,P.XIANG,C.LI,W.JU,J.LI,G.HU,B.QIN, JRNL AUTH 2 B.YIN,J.A.WOJDYLA,M.WANG,J.YUAN,B.QIANG,P.SHU,S.CUI,X.PENG JRNL TITL STRUCTURE OF THE HETEROPHILIC INTERACTION BETWEEN THE JRNL TITL 2 NECTIN-LIKE 4 AND NECTIN-LIKE 1 MOLECULES. JRNL REF PROC. NATL. ACAD. SCI. V. 116 2068 2019 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30674679 JRNL DOI 10.1073/PNAS.1810969116 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28426 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1386 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3055 - 4.7401 1.00 2894 143 0.2252 0.2393 REMARK 3 2 4.7401 - 3.7629 1.00 2766 123 0.1691 0.1840 REMARK 3 3 3.7629 - 3.2873 1.00 2745 125 0.1875 0.1943 REMARK 3 4 3.2873 - 2.9868 1.00 2684 146 0.1818 0.1981 REMARK 3 5 2.9868 - 2.7728 1.00 2701 126 0.1949 0.2149 REMARK 3 6 2.7728 - 2.6093 1.00 2661 140 0.1992 0.2341 REMARK 3 7 2.6093 - 2.4786 1.00 2676 154 0.2074 0.2528 REMARK 3 8 2.4786 - 2.3707 1.00 2674 139 0.2231 0.2452 REMARK 3 9 2.3707 - 2.2795 1.00 2640 148 0.2397 0.2624 REMARK 3 10 2.2795 - 2.2008 0.97 2599 142 0.2517 0.2947 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2372 REMARK 3 ANGLE : 1.783 3239 REMARK 3 CHIRALITY : 0.063 372 REMARK 3 PLANARITY : 0.006 427 REMARK 3 DIHEDRAL : 13.203 1452 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZO1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300002233. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28426 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 47.295 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.930 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.79 REMARK 200 R MERGE FOR SHELL (I) : 0.94300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: ROD-LIKE CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04M POTASSIUM DIHYDROGEN PHOSPHATE, REMARK 280 10% PEG 8000, 25% (V/V) GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 54.74850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 54.74850 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.22050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.74850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.61025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.74850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 136.83075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.74850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 136.83075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.74850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.61025 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 54.74850 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 54.74850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 91.22050 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 54.74850 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 54.74850 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 91.22050 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 54.74850 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 136.83075 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 54.74850 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 45.61025 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.74850 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 45.61025 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 54.74850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 136.83075 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 54.74850 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 54.74850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 91.22050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 617 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 25 REMARK 465 GLU A 26 REMARK 465 VAL A 27 REMARK 465 GLN A 28 REMARK 465 ALA A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 160 O HOH A 504 1.29 REMARK 500 H HIS A 47 O HOH A 503 1.34 REMARK 500 HH22 ARG A 257 O HOH A 507 1.42 REMARK 500 HH22 ARG A 70 O HOH A 505 1.48 REMARK 500 OE2 GLU A 41 HH12 ARG A 90 1.58 REMARK 500 O HOH A 560 O HOH A 592 1.85 REMARK 500 O HOH A 566 O HOH A 660 1.89 REMARK 500 OD1 ASN A 126 O HOH A 501 1.91 REMARK 500 O HOH A 603 O HOH A 611 2.02 REMARK 500 O HOH A 514 O HOH A 665 2.08 REMARK 500 O HOH A 513 O HOH A 673 2.08 REMARK 500 OE1 GLU A 30 O HOH A 502 2.09 REMARK 500 N HIS A 47 O HOH A 503 2.11 REMARK 500 NE ARG A 160 O HOH A 504 2.12 REMARK 500 NH2 ARG A 70 O HOH A 505 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 605 O HOH A 670 10675 2.09 REMARK 500 O HOH A 583 O HOH A 653 12465 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 48 70.54 52.62 REMARK 500 SER A 52 -174.71 -68.63 REMARK 500 ASN A 67 -131.39 42.03 REMARK 500 THR A 108 2.53 -68.71 REMARK 500 ARG A 162 -9.84 73.87 REMARK 500 GLN A 262 -38.90 74.20 REMARK 500 GLN A 262 -38.43 73.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z9M RELATED DB: PDB REMARK 900 NECTIN-LIKE PROTEIN 1 DBREF 5ZO1 A 25 317 UNP Q8R464 CADM4_MOUSE 25 317 SEQADV 5ZO1 GLN A 31 UNP Q8R464 ASN 31 ENGINEERED MUTATION SEQADV 5ZO1 GLN A 262 UNP Q8R464 ASN 262 ENGINEERED MUTATION SEQADV 5ZO1 GLN A 286 UNP Q8R464 ASN 286 ENGINEERED MUTATION SEQADV 5ZO1 HIS A 318 UNP Q8R464 EXPRESSION TAG SEQADV 5ZO1 HIS A 319 UNP Q8R464 EXPRESSION TAG SEQADV 5ZO1 HIS A 320 UNP Q8R464 EXPRESSION TAG SEQADV 5ZO1 HIS A 321 UNP Q8R464 EXPRESSION TAG SEQADV 5ZO1 HIS A 322 UNP Q8R464 EXPRESSION TAG SEQADV 5ZO1 HIS A 323 UNP Q8R464 EXPRESSION TAG SEQRES 1 A 299 GLN GLU VAL GLN THR GLU GLN VAL THR VAL ALA GLU GLY SEQRES 2 A 299 GLY VAL ALA GLU ILE THR CYS ARG LEU HIS GLN TYR ASP SEQRES 3 A 299 GLY SER ILE VAL VAL ILE GLN ASN PRO ALA ARG GLN THR SEQRES 4 A 299 LEU PHE PHE ASN GLY THR ARG ALA LEU LYS ASP GLU ARG SEQRES 5 A 299 PHE GLN LEU GLU GLU PHE SER PRO ARG ARG VAL ARG ILE SEQRES 6 A 299 ARG LEU SER ASP ALA ARG LEU GLU ASP GLU GLY GLY TYR SEQRES 7 A 299 PHE CYS GLN LEU TYR THR GLU ASP THR HIS HIS GLN ILE SEQRES 8 A 299 ALA THR LEU THR VAL LEU VAL ALA PRO GLU ASN PRO VAL SEQRES 9 A 299 VAL GLU VAL ARG GLU GLN ALA VAL GLU GLY GLY GLU VAL SEQRES 10 A 299 GLU LEU SER CYS LEU VAL PRO ARG SER ARG PRO ALA ALA SEQRES 11 A 299 VAL LEU ARG TRP TYR ARG ASP ARG LYS GLU LEU LYS GLY SEQRES 12 A 299 VAL SER SER GLY GLN GLU ASN GLY LYS VAL TRP SER VAL SEQRES 13 A 299 ALA SER THR VAL ARG PHE ARG VAL ASP ARG LYS ASP ASP SEQRES 14 A 299 GLY GLY ILE VAL ILE CYS GLU ALA GLN ASN GLN ALA LEU SEQRES 15 A 299 PRO SER GLY HIS SER LYS GLN THR GLN TYR VAL LEU ASP SEQRES 16 A 299 VAL GLN TYR SER PRO THR ALA ARG ILE HIS ALA SER GLN SEQRES 17 A 299 ALA VAL VAL ARG GLU GLY ASP THR LEU VAL LEU THR CYS SEQRES 18 A 299 ALA VAL THR GLY ASN PRO ARG PRO ASN GLN ILE ARG TRP SEQRES 19 A 299 ASN ARG GLY GLN GLU SER LEU PRO GLU ARG ALA GLU ALA SEQRES 20 A 299 VAL GLY GLU THR LEU THR LEU PRO GLY LEU VAL SER ALA SEQRES 21 A 299 ASP GLN GLY THR TYR THR CYS GLU ALA ALA ASN LYS HIS SEQRES 22 A 299 GLY HIS ALA ARG ALA LEU TYR VAL LEU VAL VAL TYR ASP SEQRES 23 A 299 PRO GLY ALA VAL VAL GLU ALA HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET FUC B 3 10 HET GOL A 404 14 HET GOL A 405 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 FUC C6 H12 O5 FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *188(H2 O) HELIX 1 AA1 ARG A 95 GLU A 99 5 5 HELIX 2 AA2 ASP A 189 ASP A 193 5 5 HELIX 3 AA3 VAL A 282 GLN A 286 5 5 SHEET 1 AA1 6 GLU A 30 ALA A 35 0 SHEET 2 AA1 6 HIS A 113 LEU A 121 1 O LEU A 121 N VAL A 34 SHEET 3 AA1 6 GLY A 100 LEU A 106 -1 N TYR A 102 O ALA A 116 SHEET 4 AA1 6 VAL A 54 GLN A 57 -1 N VAL A 55 O GLN A 105 SHEET 5 AA1 6 THR A 63 PHE A 66 -1 O LEU A 64 N ILE A 56 SHEET 6 AA1 6 THR A 69 ARG A 70 -1 O THR A 69 N PHE A 66 SHEET 1 AA2 3 ALA A 40 ARG A 45 0 SHEET 2 AA2 3 ARG A 86 LEU A 91 -1 O VAL A 87 N CYS A 44 SHEET 3 AA2 3 PHE A 77 PHE A 82 -1 N GLU A 81 O ARG A 88 SHEET 1 AA3 4 VAL A 128 VAL A 131 0 SHEET 2 AA3 4 GLU A 140 SER A 150 -1 O LEU A 146 N VAL A 128 SHEET 3 AA3 4 VAL A 177 ARG A 187 -1 O TRP A 178 N SER A 150 SHEET 4 AA3 4 VAL A 168 ASN A 174 -1 N ASN A 174 O VAL A 177 SHEET 1 AA4 5 ALA A 135 VAL A 136 0 SHEET 2 AA4 5 VAL A 220 ALA A 230 1 O GLN A 221 N ALA A 135 SHEET 3 AA4 5 LEU A 241 ASN A 250 -1 O ALA A 246 N ARG A 227 SHEET 4 AA4 5 THR A 275 LEU A 278 -1 O LEU A 278 N LEU A 241 SHEET 5 AA4 5 GLU A 270 VAL A 272 -1 N VAL A 272 O THR A 275 SHEET 1 AA5 4 LYS A 163 LEU A 165 0 SHEET 2 AA5 4 VAL A 155 ARG A 160 -1 N ARG A 160 O LYS A 163 SHEET 3 AA5 4 ILE A 196 GLN A 202 -1 O GLU A 200 N ARG A 157 SHEET 4 AA5 4 LYS A 212 VAL A 217 -1 O LYS A 212 N ALA A 201 SHEET 1 AA6 3 ARG A 257 ARG A 260 0 SHEET 2 AA6 3 GLY A 287 ASN A 295 -1 O GLU A 292 N ARG A 257 SHEET 3 AA6 3 GLY A 298 LEU A 306 -1 O TYR A 304 N TYR A 289 SSBOND 1 CYS A 44 CYS A 104 1555 1555 2.02 SSBOND 2 CYS A 145 CYS A 199 1555 1555 2.03 SSBOND 3 CYS A 245 CYS A 291 1555 1555 2.00 LINK ND2 ASN A 67 C1 NAG B 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.47 LINK O6 NAG B 1 C1 FUC B 3 1555 1555 1.45 CISPEP 1 ARG A 151 PRO A 152 0 -5.13 CISPEP 2 ASN A 250 PRO A 251 0 1.35 CRYST1 109.497 109.497 182.441 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009133 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009133 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005481 0.00000