HEADER HYDROLASE 12-APR-18 5ZO4 TITLE INACTIVE STATE OF THE NUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE 3'-5' EXONUCLEASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEASE; COMPND 5 EC: 3.1.13.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM FABRUM STR. J-07; SOURCE 3 ORGANISM_TAXID: 1183433; SOURCE 4 GENE: AGR8A_LC10769; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.L.YUAN,L.C.GU REVDAT 2 27-MAR-24 5ZO4 1 REMARK REVDAT 1 10-APR-19 5ZO4 0 JRNL AUTH Z.YUAN,F.GAO,K.YIN,L.GU JRNL TITL NRNC, AN RNASE D-LIKE PROTEIN FROMAGROBACTERIUM, IS A NOVEL JRNL TITL 2 OCTAMERIC NUCLEASE THAT SPECIFICALLY DEGRADES DSDNA BUT JRNL TITL 3 LEAVES DSRNA INTACT. JRNL REF FRONT MICROBIOL V. 9 3230 2018 JRNL REFN ESSN 1664-302X JRNL PMID 30666241 JRNL DOI 10.3389/FMICB.2018.03230 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2313: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3228 - 6.0174 0.99 1375 152 0.1761 0.1939 REMARK 3 2 6.0174 - 4.7793 1.00 1304 144 0.1895 0.2146 REMARK 3 3 4.7793 - 4.1761 1.00 1289 144 0.1679 0.2281 REMARK 3 4 4.1761 - 3.7947 1.00 1255 140 0.1900 0.2494 REMARK 3 5 3.7947 - 3.5229 1.00 1280 141 0.2240 0.2416 REMARK 3 6 3.5229 - 3.3154 1.00 1248 139 0.2659 0.3204 REMARK 3 7 3.3154 - 3.1494 1.00 1268 143 0.2524 0.3288 REMARK 3 8 3.1494 - 3.0124 1.00 1249 139 0.2703 0.3221 REMARK 3 9 3.0124 - 2.8965 1.00 1256 140 0.2719 0.3552 REMARK 3 10 2.8965 - 2.7965 1.00 1243 137 0.2693 0.3326 REMARK 3 11 2.7965 - 2.7091 1.00 1242 138 0.2726 0.2914 REMARK 3 12 2.7091 - 2.6317 1.00 1270 141 0.2705 0.3605 REMARK 3 13 2.6317 - 2.5624 1.00 1235 138 0.2831 0.3318 REMARK 3 14 2.5624 - 2.4999 1.00 1238 138 0.2895 0.4082 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3308 REMARK 3 ANGLE : 1.013 4486 REMARK 3 CHIRALITY : 0.054 512 REMARK 3 PLANARITY : 0.006 580 REMARK 3 DIHEDRAL : 14.127 1984 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZO4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300007407. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19752 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 60.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, PH 8.0, 1 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 61.00500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 61.00500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 74.40400 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 61.00500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 61.00500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 74.40400 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 61.00500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 61.00500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 74.40400 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 61.00500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 61.00500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 74.40400 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 61.00500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.00500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 74.40400 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 61.00500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 61.00500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 74.40400 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 61.00500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 61.00500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 74.40400 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 61.00500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 61.00500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 74.40400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -286.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 244.02000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 244.02000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 244.02000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 244.02000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 3 -109.37 -177.17 REMARK 500 THR A 4 97.38 67.12 REMARK 500 ALA A 64 80.39 -153.58 REMARK 500 TYR A 82 69.90 70.23 REMARK 500 THR A 99 146.25 -170.66 REMARK 500 ALA B 64 82.94 -152.33 REMARK 500 TYR B 82 64.66 74.78 REMARK 500 ALA B 135 -84.76 -59.24 REMARK 500 GLN B 136 7.98 -171.92 REMARK 500 GLN B 137 -26.43 82.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 27 OD2 REMARK 620 2 ASP A 86 OD2 84.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 29 OE1 REMARK 620 2 GLU A 29 OE2 52.7 REMARK 620 3 ASP A 157 OD2 121.2 69.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 304 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 27 OD1 REMARK 620 2 ASP B 86 OD2 78.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 29 OE2 REMARK 620 2 ASP B 157 OD2 101.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 304 DBREF1 5ZO4 A 1 208 UNP A0A1S7QSB2_9RHIZ DBREF2 5ZO4 A A0A1S7QSB2 1 208 DBREF1 5ZO4 B 1 208 UNP A0A1S7QSB2_9RHIZ DBREF2 5ZO4 B A0A1S7QSB2 1 208 SEQADV 5ZO4 GLY A -3 UNP A0A1S7QSB EXPRESSION TAG SEQADV 5ZO4 PRO A -2 UNP A0A1S7QSB EXPRESSION TAG SEQADV 5ZO4 GLY A -1 UNP A0A1S7QSB EXPRESSION TAG SEQADV 5ZO4 SER A 0 UNP A0A1S7QSB EXPRESSION TAG SEQADV 5ZO4 GLY B -3 UNP A0A1S7QSB EXPRESSION TAG SEQADV 5ZO4 PRO B -2 UNP A0A1S7QSB EXPRESSION TAG SEQADV 5ZO4 GLY B -1 UNP A0A1S7QSB EXPRESSION TAG SEQADV 5ZO4 SER B 0 UNP A0A1S7QSB EXPRESSION TAG SEQRES 1 A 212 GLY PRO GLY SER MET ALA ALA THR ILE ARG TYR HIS GLU SEQRES 2 A 212 GLY ASP ILE SER ALA GLU ASP ALA ALA ARG TYR LYS GLY SEQRES 3 A 212 ALA ILE ALA ILE ASP THR GLU THR LEU GLY LEU VAL PRO SEQRES 4 A 212 ARG ARG ASP ARG LEU CYS VAL VAL GLN LEU SER SER GLY SEQRES 5 A 212 ASP GLY THR ALA ASP VAL ILE ARG ILE ALA ALA GLY GLN SEQRES 6 A 212 LYS GLN ALA PRO ASN LEU VAL HIS MET LEU ALA ASP PRO SEQRES 7 A 212 ALA ARG GLN LYS ILE PHE HIS TYR GLY ARG PHE ASP ILE SEQRES 8 A 212 ALA VAL LEU PHE HIS THR PHE GLY VAL THR THR THR PRO SEQRES 9 A 212 VAL PHE CYS THR LYS ILE ALA SER ARG LEU CYS ARG THR SEQRES 10 A 212 TYR THR ASP ARG HIS GLY LEU LYS ASP ASN LEU LYS GLU SEQRES 11 A 212 MET LEU GLU VAL ASP ILE SER LYS ALA GLN GLN SER SER SEQRES 12 A 212 ASP TRP ALA ALA GLU THR LEU SER PRO ALA GLN LEU GLU SEQRES 13 A 212 TYR ALA ALA SER ASP VAL LEU TYR LEU HIS ALA LEU ARG SEQRES 14 A 212 ASP LYS LEU THR ALA ARG LEU ILE ARG ASP GLY ARG ILE SEQRES 15 A 212 GLU HIS ALA ASP ALA CYS PHE ALA PHE LEU PRO THR ARG SEQRES 16 A 212 ALA LYS LEU ASP LEU LEU GLY TRP ASP GLU THR ASP ILE SEQRES 17 A 212 PHE ALA HIS SER SEQRES 1 B 212 GLY PRO GLY SER MET ALA ALA THR ILE ARG TYR HIS GLU SEQRES 2 B 212 GLY ASP ILE SER ALA GLU ASP ALA ALA ARG TYR LYS GLY SEQRES 3 B 212 ALA ILE ALA ILE ASP THR GLU THR LEU GLY LEU VAL PRO SEQRES 4 B 212 ARG ARG ASP ARG LEU CYS VAL VAL GLN LEU SER SER GLY SEQRES 5 B 212 ASP GLY THR ALA ASP VAL ILE ARG ILE ALA ALA GLY GLN SEQRES 6 B 212 LYS GLN ALA PRO ASN LEU VAL HIS MET LEU ALA ASP PRO SEQRES 7 B 212 ALA ARG GLN LYS ILE PHE HIS TYR GLY ARG PHE ASP ILE SEQRES 8 B 212 ALA VAL LEU PHE HIS THR PHE GLY VAL THR THR THR PRO SEQRES 9 B 212 VAL PHE CYS THR LYS ILE ALA SER ARG LEU CYS ARG THR SEQRES 10 B 212 TYR THR ASP ARG HIS GLY LEU LYS ASP ASN LEU LYS GLU SEQRES 11 B 212 MET LEU GLU VAL ASP ILE SER LYS ALA GLN GLN SER SER SEQRES 12 B 212 ASP TRP ALA ALA GLU THR LEU SER PRO ALA GLN LEU GLU SEQRES 13 B 212 TYR ALA ALA SER ASP VAL LEU TYR LEU HIS ALA LEU ARG SEQRES 14 B 212 ASP LYS LEU THR ALA ARG LEU ILE ARG ASP GLY ARG ILE SEQRES 15 B 212 GLU HIS ALA ASP ALA CYS PHE ALA PHE LEU PRO THR ARG SEQRES 16 B 212 ALA LYS LEU ASP LEU LEU GLY TRP ASP GLU THR ASP ILE SEQRES 17 B 212 PHE ALA HIS SER HET SO4 A 301 5 HET MN A 302 1 HET MN A 303 1 HET SO4 B 301 5 HET SO4 B 302 5 HET MN B 303 1 HET MN B 304 1 HETNAM SO4 SULFATE ION HETNAM MN MANGANESE (II) ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 4 MN 4(MN 2+) FORMUL 10 HOH *28(H2 O) HELIX 1 AA1 SER A 13 ARG A 19 1 7 HELIX 2 AA2 ALA A 64 ASP A 73 1 10 HELIX 3 AA3 TYR A 82 GLY A 95 1 14 HELIX 4 AA4 THR A 104 ARG A 112 1 9 HELIX 5 AA5 GLY A 119 LEU A 128 1 10 HELIX 6 AA6 SER A 147 TYR A 160 1 14 HELIX 7 AA7 TYR A 160 ASP A 175 1 16 HELIX 8 AA8 ARG A 177 LEU A 197 1 21 HELIX 9 AA9 SER B 13 ALA B 18 1 6 HELIX 10 AB1 ALA B 64 ASP B 73 1 10 HELIX 11 AB2 TYR B 82 GLY B 95 1 14 HELIX 12 AB3 THR B 104 ARG B 112 1 9 HELIX 13 AB4 GLY B 119 LEU B 128 1 10 HELIX 14 AB5 SER B 147 ASP B 157 1 11 HELIX 15 AB6 TYR B 160 ASP B 175 1 16 HELIX 16 AB7 ARG B 177 LEU B 197 1 21 SHEET 1 AA1 6 ILE A 5 GLU A 9 0 SHEET 2 AA1 6 ALA A 52 ARG A 56 1 O ALA A 52 N ARG A 6 SHEET 3 AA1 6 LEU A 40 SER A 46 -1 N LEU A 45 O ASP A 53 SHEET 4 AA1 6 ILE A 24 THR A 30 -1 N GLU A 29 O CYS A 41 SHEET 5 AA1 6 LYS A 78 PHE A 80 1 O ILE A 79 N ILE A 24 SHEET 6 AA1 6 VAL A 101 CYS A 103 1 O PHE A 102 N LYS A 78 SHEET 1 AA2 6 ILE B 5 GLU B 9 0 SHEET 2 AA2 6 ALA B 52 ARG B 56 1 O ALA B 52 N ARG B 6 SHEET 3 AA2 6 LEU B 40 SER B 46 -1 N VAL B 43 O ILE B 55 SHEET 4 AA2 6 ILE B 24 THR B 30 -1 N ASP B 27 O GLN B 44 SHEET 5 AA2 6 LYS B 78 PHE B 80 1 O ILE B 79 N ILE B 24 SHEET 6 AA2 6 VAL B 101 CYS B 103 1 O PHE B 102 N LYS B 78 LINK OD2 ASP A 27 MN MN A 303 1555 1555 1.79 LINK OE1 GLU A 29 MN MN A 302 1555 1555 2.56 LINK OE2 GLU A 29 MN MN A 302 1555 1555 2.35 LINK OD2 ASP A 86 MN MN A 303 1555 1555 2.54 LINK OD2 ASP A 157 MN MN A 302 1555 1555 2.58 LINK OD1 ASP B 27 MN MN B 304 1555 1555 2.17 LINK OE2 GLU B 29 MN MN B 303 1555 1555 2.31 LINK OD2 ASP B 86 MN MN B 304 1555 1555 2.51 LINK OD2 ASP B 157 MN MN B 303 1555 1555 1.99 CISPEP 1 ALA A 2 ALA A 3 0 -2.69 CISPEP 2 THR A 99 PRO A 100 0 -8.57 CISPEP 3 THR B 99 PRO B 100 0 -14.05 SITE 1 AC1 4 HIS A 81 LYS A 105 GLY A 119 LEU A 120 SITE 1 AC2 2 GLU A 29 ASP A 157 SITE 1 AC3 2 ASP A 27 ASP A 86 SITE 1 AC4 4 HIS B 81 LYS B 105 GLY B 119 LEU B 120 SITE 1 AC5 3 ASP A 200 GLU A 201 ASP B 200 SITE 1 AC6 2 GLU B 29 ASP B 157 SITE 1 AC7 2 ASP B 27 ASP B 86 CRYST1 122.010 122.010 148.808 90.00 90.00 90.00 I 4 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008196 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008196 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006720 0.00000