HEADER CELL CYCLE 12-APR-18 5ZO9 TITLE EG5 MOTOR DOMAIN IN COMPLEX WITH STLC-TYPE INHIBITOR PVEI0021 (C2 TITLE 2 TYPE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINESIN-LIKE PROTEIN KIF11; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINESIN MOTOR DOMAIN; COMPND 5 SYNONYM: KINESIN-LIKE PROTEIN 1,KINESIN-LIKE SPINDLE PROTEIN HKSP, COMPND 6 KINESIN-RELATED MOTOR PROTEIN EG5,THYROID RECEPTOR-INTERACTING COMPND 7 PROTEIN 5,TRIP-5; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIF11, EG5, KNSL1, TRIP5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: CODON PLUS RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCOLDIII KEYWDS MOTOR DOMAIN ATP BINDING, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR H.YOKOYAMA,K.SATO REVDAT 3 27-MAR-24 5ZO9 1 LINK REVDAT 2 11-SEP-19 5ZO9 1 COMPND JRNL REVDAT 1 10-OCT-18 5ZO9 0 JRNL AUTH H.YOKOYAMA,J.I.SAWADA,K.SATO,N.OGO,N.KAMEI,Y.ISHIKAWA, JRNL AUTH 2 K.HARA,A.ASAI,H.HASHIMOTO JRNL TITL STRUCTURAL AND THERMODYNAMIC BASIS OF THE ENHANCED JRNL TITL 2 INTERACTION BETWEEN KINESIN SPINDLE PROTEIN EG5 AND JRNL TITL 3 STLC-TYPE INHIBITORS. JRNL REF ACS OMEGA V. 3 12284 2018 JRNL REFN ESSN 2470-1343 JRNL PMID 31459302 JRNL DOI 10.1021/ACSOMEGA.8B00778 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 17799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2029 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1229 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.3670 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.4580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5226 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 134 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.438 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.368 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.560 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5436 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5082 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7364 ; 1.578 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11790 ; 0.960 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 656 ; 6.959 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;34.702 ;24.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 982 ;14.119 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;16.165 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 862 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5876 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1060 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2642 ; 4.669 ; 6.300 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2641 ; 4.668 ; 6.299 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3292 ; 7.248 ; 9.440 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3293 ; 7.248 ; 9.441 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2794 ; 4.560 ; 6.720 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2787 ; 4.556 ; 6.721 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4061 ; 7.335 ; 9.896 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5747 ;10.390 ;72.770 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5748 ;10.389 ;72.763 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 16 367 B 16 367 20934 0.05 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZO9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300007437. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20540 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.390 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24-34% PEG 3350, 0.1M MES, 0.2M REMARK 280 AMMONIUM SULFATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.57900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.36450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.57900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.36450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 10 REMARK 465 ASN A 11 REMARK 465 HIS A 12 REMARK 465 LYS A 13 REMARK 465 VAL A 14 REMARK 465 HIS A 15 REMARK 465 GLY A 55 REMARK 465 GLY A 56 REMARK 465 LEU A 57 REMARK 465 ALA A 58 REMARK 465 ASP A 59 REMARK 465 LYS A 60 REMARK 465 ILE A 272 REMARK 465 GLY A 273 REMARK 465 ARG A 274 REMARK 465 SER A 275 REMARK 465 GLY A 276 REMARK 465 ALA A 277 REMARK 465 VAL A 278 REMARK 465 ASP A 279 REMARK 465 LYS A 280 REMARK 465 ARG A 281 REMARK 465 ALA A 282 REMARK 465 ARG A 283 REMARK 465 GLU A 284 REMARK 465 ALA A 285 REMARK 465 GLY A 286 REMARK 465 LYS A 368 REMARK 465 LEU A 369 REMARK 465 GLN A 370 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 MET B 10 REMARK 465 ASN B 11 REMARK 465 HIS B 12 REMARK 465 LYS B 13 REMARK 465 VAL B 14 REMARK 465 HIS B 15 REMARK 465 GLY B 55 REMARK 465 GLY B 56 REMARK 465 LEU B 57 REMARK 465 ALA B 58 REMARK 465 ASP B 59 REMARK 465 LYS B 60 REMARK 465 ILE B 272 REMARK 465 GLY B 273 REMARK 465 ARG B 274 REMARK 465 SER B 275 REMARK 465 GLY B 276 REMARK 465 ALA B 277 REMARK 465 VAL B 278 REMARK 465 ASP B 279 REMARK 465 LYS B 280 REMARK 465 ARG B 281 REMARK 465 ALA B 282 REMARK 465 ARG B 283 REMARK 465 GLU B 284 REMARK 465 ALA B 285 REMARK 465 GLY B 286 REMARK 465 LYS B 368 REMARK 465 LEU B 369 REMARK 465 GLN B 370 REMARK 465 HIS B 371 REMARK 465 HIS B 372 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 465 HIS B 375 REMARK 465 HIS B 376 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 254 77.87 -107.45 REMARK 500 GLU B 254 78.99 -106.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 112 OG1 REMARK 620 2 ADP A 600 O1B 83.4 REMARK 620 3 HOH A 704 O 69.5 77.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 605 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 167 OE1 REMARK 620 2 SO4 A 604 O1 81.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 112 OG1 REMARK 620 2 ADP B 600 O2B 81.6 REMARK 620 3 HOH B 701 O 66.4 70.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 605 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 167 OE1 REMARK 620 2 SO4 B 604 O4 89.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4C5 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4C5 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 605 DBREF 5ZO9 A 17 369 UNP P52732 KIF11_HUMAN 17 369 DBREF 5ZO9 B 17 369 UNP P52732 KIF11_HUMAN 17 369 SEQADV 5ZO9 MET A 10 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 ASN A 11 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 HIS A 12 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 LYS A 13 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 VAL A 14 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 HIS A 15 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 MET A 16 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 GLN A 370 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 HIS A 371 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 HIS A 372 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 HIS A 373 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 HIS A 374 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 HIS A 375 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 HIS A 376 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 MET B 10 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 ASN B 11 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 HIS B 12 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 LYS B 13 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 VAL B 14 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 HIS B 15 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 MET B 16 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 GLN B 370 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 HIS B 371 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 HIS B 372 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 HIS B 373 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 HIS B 374 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 HIS B 375 UNP P52732 EXPRESSION TAG SEQADV 5ZO9 HIS B 376 UNP P52732 EXPRESSION TAG SEQRES 1 A 367 MET ASN HIS LYS VAL HIS MET LYS ASN ILE GLN VAL VAL SEQRES 2 A 367 VAL ARG CYS ARG PRO PHE ASN LEU ALA GLU ARG LYS ALA SEQRES 3 A 367 SER ALA HIS SER ILE VAL GLU CYS ASP PRO VAL ARG LYS SEQRES 4 A 367 GLU VAL SER VAL ARG THR GLY GLY LEU ALA ASP LYS SER SEQRES 5 A 367 SER ARG LYS THR TYR THR PHE ASP MET VAL PHE GLY ALA SEQRES 6 A 367 SER THR LYS GLN ILE ASP VAL TYR ARG SER VAL VAL CYS SEQRES 7 A 367 PRO ILE LEU ASP GLU VAL ILE MET GLY TYR ASN CYS THR SEQRES 8 A 367 ILE PHE ALA TYR GLY GLN THR GLY THR GLY LYS THR PHE SEQRES 9 A 367 THR MET GLU GLY GLU ARG SER PRO ASN GLU GLU TYR THR SEQRES 10 A 367 TRP GLU GLU ASP PRO LEU ALA GLY ILE ILE PRO ARG THR SEQRES 11 A 367 LEU HIS GLN ILE PHE GLU LYS LEU THR ASP ASN GLY THR SEQRES 12 A 367 GLU PHE SER VAL LYS VAL SER LEU LEU GLU ILE TYR ASN SEQRES 13 A 367 GLU GLU LEU PHE ASP LEU LEU ASN PRO SER SER ASP VAL SEQRES 14 A 367 SER GLU ARG LEU GLN MET PHE ASP ASP PRO ARG ASN LYS SEQRES 15 A 367 ARG GLY VAL ILE ILE LYS GLY LEU GLU GLU ILE THR VAL SEQRES 16 A 367 HIS ASN LYS ASP GLU VAL TYR GLN ILE LEU GLU LYS GLY SEQRES 17 A 367 ALA ALA LYS ARG THR THR ALA ALA THR LEU MET ASN ALA SEQRES 18 A 367 TYR SER SER ARG SER HIS SER VAL PHE SER VAL THR ILE SEQRES 19 A 367 HIS MET LYS GLU THR THR ILE ASP GLY GLU GLU LEU VAL SEQRES 20 A 367 LYS ILE GLY LYS LEU ASN LEU VAL ASP LEU ALA GLY SER SEQRES 21 A 367 GLU ASN ILE GLY ARG SER GLY ALA VAL ASP LYS ARG ALA SEQRES 22 A 367 ARG GLU ALA GLY ASN ILE ASN GLN SER LEU LEU THR LEU SEQRES 23 A 367 GLY ARG VAL ILE THR ALA LEU VAL GLU ARG THR PRO HIS SEQRES 24 A 367 VAL PRO TYR ARG GLU SER LYS LEU THR ARG ILE LEU GLN SEQRES 25 A 367 ASP SER LEU GLY GLY ARG THR ARG THR SER ILE ILE ALA SEQRES 26 A 367 THR ILE SER PRO ALA SER LEU ASN LEU GLU GLU THR LEU SEQRES 27 A 367 SER THR LEU GLU TYR ALA HIS ARG ALA LYS ASN ILE LEU SEQRES 28 A 367 ASN LYS PRO GLU VAL ASN GLN LYS LEU GLN HIS HIS HIS SEQRES 29 A 367 HIS HIS HIS SEQRES 1 B 367 MET ASN HIS LYS VAL HIS MET LYS ASN ILE GLN VAL VAL SEQRES 2 B 367 VAL ARG CYS ARG PRO PHE ASN LEU ALA GLU ARG LYS ALA SEQRES 3 B 367 SER ALA HIS SER ILE VAL GLU CYS ASP PRO VAL ARG LYS SEQRES 4 B 367 GLU VAL SER VAL ARG THR GLY GLY LEU ALA ASP LYS SER SEQRES 5 B 367 SER ARG LYS THR TYR THR PHE ASP MET VAL PHE GLY ALA SEQRES 6 B 367 SER THR LYS GLN ILE ASP VAL TYR ARG SER VAL VAL CYS SEQRES 7 B 367 PRO ILE LEU ASP GLU VAL ILE MET GLY TYR ASN CYS THR SEQRES 8 B 367 ILE PHE ALA TYR GLY GLN THR GLY THR GLY LYS THR PHE SEQRES 9 B 367 THR MET GLU GLY GLU ARG SER PRO ASN GLU GLU TYR THR SEQRES 10 B 367 TRP GLU GLU ASP PRO LEU ALA GLY ILE ILE PRO ARG THR SEQRES 11 B 367 LEU HIS GLN ILE PHE GLU LYS LEU THR ASP ASN GLY THR SEQRES 12 B 367 GLU PHE SER VAL LYS VAL SER LEU LEU GLU ILE TYR ASN SEQRES 13 B 367 GLU GLU LEU PHE ASP LEU LEU ASN PRO SER SER ASP VAL SEQRES 14 B 367 SER GLU ARG LEU GLN MET PHE ASP ASP PRO ARG ASN LYS SEQRES 15 B 367 ARG GLY VAL ILE ILE LYS GLY LEU GLU GLU ILE THR VAL SEQRES 16 B 367 HIS ASN LYS ASP GLU VAL TYR GLN ILE LEU GLU LYS GLY SEQRES 17 B 367 ALA ALA LYS ARG THR THR ALA ALA THR LEU MET ASN ALA SEQRES 18 B 367 TYR SER SER ARG SER HIS SER VAL PHE SER VAL THR ILE SEQRES 19 B 367 HIS MET LYS GLU THR THR ILE ASP GLY GLU GLU LEU VAL SEQRES 20 B 367 LYS ILE GLY LYS LEU ASN LEU VAL ASP LEU ALA GLY SER SEQRES 21 B 367 GLU ASN ILE GLY ARG SER GLY ALA VAL ASP LYS ARG ALA SEQRES 22 B 367 ARG GLU ALA GLY ASN ILE ASN GLN SER LEU LEU THR LEU SEQRES 23 B 367 GLY ARG VAL ILE THR ALA LEU VAL GLU ARG THR PRO HIS SEQRES 24 B 367 VAL PRO TYR ARG GLU SER LYS LEU THR ARG ILE LEU GLN SEQRES 25 B 367 ASP SER LEU GLY GLY ARG THR ARG THR SER ILE ILE ALA SEQRES 26 B 367 THR ILE SER PRO ALA SER LEU ASN LEU GLU GLU THR LEU SEQRES 27 B 367 SER THR LEU GLU TYR ALA HIS ARG ALA LYS ASN ILE LEU SEQRES 28 B 367 ASN LYS PRO GLU VAL ASN GLN LYS LEU GLN HIS HIS HIS SEQRES 29 B 367 HIS HIS HIS HET ADP A 600 27 HET MG A 601 1 HET 4C5 A 602 28 HET SO4 A 603 5 HET SO4 A 604 5 HET NA A 605 1 HET ADP B 600 27 HET MG B 601 1 HET 4C5 B 602 28 HET SO4 B 603 5 HET SO4 B 604 5 HET NA B 605 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM 4C5 (2R)-2-AZANYL-3-[(4-METHOXYPHENYL)-DIPHENYL- HETNAM 2 4C5 METHYL]SULFANYL-PROPANOIC ACID HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 MG 2(MG 2+) FORMUL 5 4C5 2(C23 H23 N O3 S) FORMUL 6 SO4 4(O4 S 2-) FORMUL 8 NA 2(NA 1+) FORMUL 15 HOH *18(H2 O) HELIX 1 AA1 LYS A 77 GLY A 96 1 20 HELIX 2 AA2 GLY A 110 GLU A 116 1 7 HELIX 3 AA3 SER A 120 GLU A 124 5 5 HELIX 4 AA4 THR A 126 ASP A 130 5 5 HELIX 5 AA5 GLY A 134 ASP A 149 1 16 HELIX 6 AA6 ASN A 206 ASP A 208 5 3 HELIX 7 AA7 GLU A 209 MET A 228 1 20 HELIX 8 AA8 ALA A 230 SER A 235 1 6 HELIX 9 AA9 ASN A 289 GLU A 304 1 16 HELIX 10 AB1 PRO A 310 GLU A 313 5 4 HELIX 11 AB2 SER A 314 LEU A 320 1 7 HELIX 12 AB3 GLN A 321 LEU A 324 5 4 HELIX 13 AB4 ALA A 339 LEU A 341 5 3 HELIX 14 AB5 ASN A 342 ALA A 356 1 15 HELIX 15 AB6 LYS B 77 GLY B 96 1 20 HELIX 16 AB7 GLY B 110 GLU B 116 1 7 HELIX 17 AB8 SER B 120 GLU B 124 5 5 HELIX 18 AB9 THR B 126 ASP B 130 5 5 HELIX 19 AC1 GLY B 134 ASP B 149 1 16 HELIX 20 AC2 ASN B 206 ASP B 208 5 3 HELIX 21 AC3 GLU B 209 MET B 228 1 20 HELIX 22 AC4 ALA B 230 SER B 235 1 6 HELIX 23 AC5 ASN B 289 GLU B 304 1 16 HELIX 24 AC6 PRO B 310 GLU B 313 5 4 HELIX 25 AC7 SER B 314 LEU B 320 1 7 HELIX 26 AC8 GLN B 321 LEU B 324 5 4 HELIX 27 AC9 ALA B 339 LEU B 341 5 3 HELIX 28 AD1 ASN B 342 ALA B 356 1 15 SHEET 1 AA1 2 LYS A 17 ASN A 18 0 SHEET 2 AA1 2 LEU A 360 ASN A 361 -1 O ASN A 361 N LYS A 17 SHEET 1 AA2 8 MET A 70 PHE A 72 0 SHEET 2 AA2 8 GLN A 20 CYS A 25 1 N VAL A 23 O PHE A 72 SHEET 3 AA2 8 ARG A 329 ILE A 336 1 O ILE A 332 N GLN A 20 SHEET 4 AA2 8 ASN A 98 TYR A 104 1 N PHE A 102 O ILE A 333 SHEET 5 AA2 8 GLU A 254 ASP A 265 1 O LYS A 260 N CYS A 99 SHEET 6 AA2 8 HIS A 236 THR A 248 -1 N GLU A 247 O LEU A 255 SHEET 7 AA2 8 GLU A 153 TYR A 164 -1 N LEU A 161 O VAL A 238 SHEET 8 AA2 8 GLU A 167 ASP A 170 -1 O PHE A 169 N GLU A 162 SHEET 1 AA3 8 MET A 70 PHE A 72 0 SHEET 2 AA3 8 GLN A 20 CYS A 25 1 N VAL A 23 O PHE A 72 SHEET 3 AA3 8 ARG A 329 ILE A 336 1 O ILE A 332 N GLN A 20 SHEET 4 AA3 8 ASN A 98 TYR A 104 1 N PHE A 102 O ILE A 333 SHEET 5 AA3 8 GLU A 254 ASP A 265 1 O LYS A 260 N CYS A 99 SHEET 6 AA3 8 HIS A 236 THR A 248 -1 N GLU A 247 O LEU A 255 SHEET 7 AA3 8 GLU A 153 TYR A 164 -1 N LEU A 161 O VAL A 238 SHEET 8 AA3 8 ILE A 202 VAL A 204 -1 O VAL A 204 N VAL A 156 SHEET 1 AA4 3 VAL A 41 ASP A 44 0 SHEET 2 AA4 3 GLU A 49 ARG A 53 -1 O GLU A 49 N ASP A 44 SHEET 3 AA4 3 ARG A 63 THR A 67 -1 O TYR A 66 N VAL A 50 SHEET 1 AA5 2 MET A 184 ASP A 186 0 SHEET 2 AA5 2 VAL A 194 ILE A 196 -1 O ILE A 195 N PHE A 185 SHEET 1 AA6 2 LYS B 17 ASN B 18 0 SHEET 2 AA6 2 LEU B 360 ASN B 361 -1 O ASN B 361 N LYS B 17 SHEET 1 AA7 8 MET B 70 PHE B 72 0 SHEET 2 AA7 8 GLN B 20 CYS B 25 1 N VAL B 23 O PHE B 72 SHEET 3 AA7 8 ARG B 329 ILE B 336 1 O ILE B 332 N GLN B 20 SHEET 4 AA7 8 ASN B 98 TYR B 104 1 N PHE B 102 O ILE B 333 SHEET 5 AA7 8 GLU B 254 ASP B 265 1 O LYS B 260 N CYS B 99 SHEET 6 AA7 8 HIS B 236 THR B 248 -1 N GLU B 247 O LEU B 255 SHEET 7 AA7 8 GLU B 153 TYR B 164 -1 N LEU B 161 O VAL B 238 SHEET 8 AA7 8 GLU B 167 ASP B 170 -1 O PHE B 169 N GLU B 162 SHEET 1 AA8 8 MET B 70 PHE B 72 0 SHEET 2 AA8 8 GLN B 20 CYS B 25 1 N VAL B 23 O PHE B 72 SHEET 3 AA8 8 ARG B 329 ILE B 336 1 O ILE B 332 N GLN B 20 SHEET 4 AA8 8 ASN B 98 TYR B 104 1 N PHE B 102 O ILE B 333 SHEET 5 AA8 8 GLU B 254 ASP B 265 1 O LYS B 260 N CYS B 99 SHEET 6 AA8 8 HIS B 236 THR B 248 -1 N GLU B 247 O LEU B 255 SHEET 7 AA8 8 GLU B 153 TYR B 164 -1 N LEU B 161 O VAL B 238 SHEET 8 AA8 8 ILE B 202 VAL B 204 -1 O VAL B 204 N VAL B 156 SHEET 1 AA9 3 VAL B 41 ASP B 44 0 SHEET 2 AA9 3 GLU B 49 ARG B 53 -1 O GLU B 49 N ASP B 44 SHEET 3 AA9 3 ARG B 63 THR B 67 -1 O TYR B 66 N VAL B 50 SHEET 1 AB1 2 MET B 184 ASP B 186 0 SHEET 2 AB1 2 VAL B 194 ILE B 196 -1 O ILE B 195 N PHE B 185 LINK OG1 THR A 112 MG MG A 601 1555 1555 2.27 LINK OE1 GLU A 167 NA NA A 605 1555 1555 2.74 LINK O1B ADP A 600 MG MG A 601 1555 1555 1.95 LINK MG MG A 601 O HOH A 704 1555 1555 2.65 LINK O1 SO4 A 604 NA NA A 605 1555 1555 3.02 LINK OG1 THR B 112 MG MG B 601 1555 1555 2.19 LINK OE1 GLU B 167 NA NA B 605 1555 1555 2.67 LINK O2B ADP B 600 MG MG B 601 1555 1555 1.96 LINK MG MG B 601 O HOH B 701 1555 1555 2.44 LINK O4 SO4 B 604 NA NA B 605 1555 1555 2.98 SITE 1 AC1 11 ARG A 24 ARG A 26 THR A 107 GLY A 108 SITE 2 AC1 11 GLY A 110 LYS A 111 THR A 112 PHE A 113 SITE 3 AC1 11 GLU A 118 MG A 601 HOH A 704 SITE 1 AC2 3 THR A 112 ADP A 600 HOH A 704 SITE 1 AC3 10 GLU A 116 GLY A 117 GLU A 118 ILE A 136 SITE 2 AC3 10 PRO A 137 LEU A 160 TYR A 211 LEU A 214 SITE 3 AC3 10 GLU A 215 ARG A 221 SITE 1 AC4 4 ARG A 33 ASN A 229 ALA A 230 ARG A 312 SITE 1 AC5 9 ARG A 26 ASN A 29 GLU A 32 ASN A 165 SITE 2 AC5 9 GLU A 167 ARG A 181 LEU A 341 ASN A 342 SITE 3 AC5 9 NA A 605 SITE 1 AC6 3 THR A 107 GLU A 167 SO4 A 604 SITE 1 AC7 12 ARG B 24 ARG B 26 PRO B 27 THR B 107 SITE 2 AC7 12 GLY B 108 GLY B 110 LYS B 111 THR B 112 SITE 3 AC7 12 PHE B 113 GLU B 118 MG B 601 HOH B 701 SITE 1 AC8 3 THR B 112 ADP B 600 HOH B 701 SITE 1 AC9 10 GLU B 116 GLY B 117 GLU B 118 ILE B 136 SITE 2 AC9 10 PRO B 137 LEU B 160 TYR B 211 LEU B 214 SITE 3 AC9 10 GLU B 215 ALA B 218 SITE 1 AD1 4 ARG B 33 ASN B 229 ALA B 230 ARG B 312 SITE 1 AD2 6 ASN B 29 ASN B 165 GLU B 167 LEU B 341 SITE 2 AD2 6 ASN B 342 NA B 605 SITE 1 AD3 3 THR B 107 GLU B 167 SO4 B 604 CRYST1 155.158 50.729 94.309 90.00 102.19 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006445 0.000000 0.001392 0.00000 SCALE2 0.000000 0.019713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010848 0.00000