HEADER OXIDOREDUCTASE 16-APR-18 5ZPV TITLE SOLUTION STRUCTURE OF THIOREDOXIN-LIKE EFFECTOR PROTEIN (TRX3) FROM TITLE 2 EDWARDSIELLA PISCICIDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN (H-TYPE,TRX-H); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THIREDOXIN-LIKE PROTEIN (TRX3); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EDWARDSIELLA TARDA EIB202; SOURCE 3 ORGANISM_TAXID: 498217; SOURCE 4 STRAIN: EIB202; SOURCE 5 GENE: ETAE_2186; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INHIBITOR, REDOX ACTIVITY, REACTIVITY, ACTIVE SITE, THIOL-DISULFIDE KEYWDS 2 OXIDOREDUCTASE, OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.M.SAYED,Y.K.MOK REVDAT 4 15-MAY-24 5ZPV 1 REMARK REVDAT 3 14-JUN-23 5ZPV 1 REMARK REVDAT 2 03-JUN-20 5ZPV 1 JRNL REMARK REVDAT 1 22-MAY-19 5ZPV 0 JRNL AUTH A.SAYED,S.CHAKRABORTY,K.Y.LEUNG,S.SUGII,Y.K.MOK JRNL TITL TRXLP, A THIOREDOXIN-LIKE EFFECTOR FROM EDWARDSIELLA JRNL TITL 2 PISCICIDA INHIBITS CELLULAR REDOX SIGNALING AND NUCLEAR JRNL TITL 3 TRANSLOCATION OF NF-KAPPA B. JRNL REF INT.J.BIOL.MACROMOL. V. 148 89 2020 JRNL REFN ISSN 0141-8130 JRNL PMID 31945434 JRNL DOI 10.1016/J.IJBIOMAC.2020.01.114 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300007327. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] TRX3, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 CC(CO)NH; 3D HCC(CO)NH; 3D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : NA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 78.27 -156.67 REMARK 500 1 ALA A 3 -172.07 56.76 REMARK 500 1 SER A 4 105.70 -179.40 REMARK 500 1 TYR A 8 91.70 45.95 REMARK 500 1 SER A 9 77.88 -150.97 REMARK 500 1 TRP A 31 53.86 -164.69 REMARK 500 1 SER A 74 35.52 -92.77 REMARK 500 1 GLN A 76 77.20 -115.58 REMARK 500 1 SER A 77 15.97 -146.80 REMARK 500 1 ILE A 80 113.62 -160.84 REMARK 500 1 GLU A 94 163.27 62.89 REMARK 500 2 SER A 4 60.46 -157.15 REMARK 500 2 TYR A 8 91.39 51.11 REMARK 500 2 SER A 9 91.81 -175.45 REMARK 500 2 TRP A 31 40.79 -159.99 REMARK 500 2 VAL A 73 -169.40 -121.08 REMARK 500 2 SER A 74 60.61 -177.30 REMARK 500 2 GLN A 76 76.47 -113.60 REMARK 500 2 SER A 77 14.61 -145.77 REMARK 500 2 GLU A 94 -54.75 174.08 REMARK 500 3 SER A 4 102.43 -179.30 REMARK 500 3 SER A 9 158.36 179.78 REMARK 500 3 TRP A 31 52.27 179.27 REMARK 500 3 SER A 74 81.93 169.26 REMARK 500 3 GLN A 75 -165.78 -71.66 REMARK 500 3 GLN A 76 72.03 -117.94 REMARK 500 3 SER A 77 11.63 -148.47 REMARK 500 3 GLU A 94 179.45 175.82 REMARK 500 4 ALA A 2 -172.21 -173.28 REMARK 500 4 ALA A 3 107.12 63.87 REMARK 500 4 SER A 4 93.12 -160.33 REMARK 500 4 TYR A 8 150.99 64.61 REMARK 500 4 SER A 9 41.05 -177.42 REMARK 500 4 TRP A 31 49.60 179.58 REMARK 500 4 SER A 74 67.34 -158.18 REMARK 500 4 GLN A 76 76.18 -116.06 REMARK 500 4 SER A 77 13.64 -142.71 REMARK 500 4 ILE A 80 106.34 -160.05 REMARK 500 4 GLU A 94 114.07 64.21 REMARK 500 4 SER A 96 -66.51 -153.71 REMARK 500 5 ALA A 2 74.68 -158.75 REMARK 500 5 ALA A 3 129.37 -174.79 REMARK 500 5 SER A 4 90.73 -160.72 REMARK 500 5 TYR A 8 88.84 46.58 REMARK 500 5 TRP A 31 51.19 -179.49 REMARK 500 5 VAL A 73 -169.33 -103.17 REMARK 500 5 SER A 74 77.32 178.24 REMARK 500 5 GLN A 75 138.88 -173.93 REMARK 500 5 GLN A 76 77.29 -117.62 REMARK 500 5 SER A 77 13.00 -143.83 REMARK 500 REMARK 500 THIS ENTRY HAS 118 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36180 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THIOREDOXIN-LIKE EFFECTOR PROTEIN (TRX3) FROM REMARK 900 EDWARDSIELLA TARDA DBREF 5ZPV A 1 106 UNP D0Z9P5 D0Z9P5_EDWTE 20 125 SEQADV 5ZPV MET A -15 UNP D0Z9P5 EXPRESSION TAG SEQADV 5ZPV HIS A -14 UNP D0Z9P5 EXPRESSION TAG SEQADV 5ZPV HIS A -13 UNP D0Z9P5 EXPRESSION TAG SEQADV 5ZPV HIS A -12 UNP D0Z9P5 EXPRESSION TAG SEQADV 5ZPV HIS A -11 UNP D0Z9P5 EXPRESSION TAG SEQADV 5ZPV HIS A -10 UNP D0Z9P5 EXPRESSION TAG SEQADV 5ZPV HIS A -9 UNP D0Z9P5 EXPRESSION TAG SEQADV 5ZPV SER A -8 UNP D0Z9P5 EXPRESSION TAG SEQADV 5ZPV SER A -7 UNP D0Z9P5 EXPRESSION TAG SEQADV 5ZPV GLY A -6 UNP D0Z9P5 EXPRESSION TAG SEQADV 5ZPV LEU A -5 UNP D0Z9P5 EXPRESSION TAG SEQADV 5ZPV VAL A -4 UNP D0Z9P5 EXPRESSION TAG SEQADV 5ZPV PRO A -3 UNP D0Z9P5 EXPRESSION TAG SEQADV 5ZPV ARG A -2 UNP D0Z9P5 EXPRESSION TAG SEQADV 5ZPV GLY A -1 UNP D0Z9P5 EXPRESSION TAG SEQADV 5ZPV SER A 0 UNP D0Z9P5 EXPRESSION TAG SEQRES 1 A 122 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 A 122 ARG GLY SER GLN ALA ALA SER VAL GLU PRO TYR SER ASP SEQRES 3 A 122 ALA ALA PHE THR GLN ALA GLN ALA SER GLY ALA PRO VAL SEQRES 4 A 122 LEU VAL ASP VAL TYR ALA ASP TRP CYS PRO VAL CYS LYS SEQRES 5 A 122 ARG GLN GLU ARG GLU LEU THR PRO LEU PHE ALA GLN PRO SEQRES 6 A 122 ALA GLN ARG ASP LEU ARG VAL PHE LYS VAL ASN PHE ASP SEQRES 7 A 122 THR GLN LYS ALA ALA LEU GLN GLN PHE ARG VAL SER GLN SEQRES 8 A 122 GLN SER THR LEU ILE LEU TYR ARG ASN GLY GLN GLU VAL SEQRES 9 A 122 ARG ARG SER ILE GLY GLU THR SER PRO SER ALA LEU SER SEQRES 10 A 122 ASP PHE LEU THR ARG HELIX 1 AA1 ASP A 10 SER A 19 1 10 HELIX 2 AA2 CYS A 32 ALA A 47 1 16 HELIX 3 AA3 ALA A 50 ASP A 53 5 4 HELIX 4 AA4 GLN A 64 PHE A 71 1 8 HELIX 5 AA5 SER A 96 THR A 105 1 10 SHEET 1 AA1 2 VAL A 23 TYR A 28 0 SHEET 2 AA1 2 ARG A 55 ASN A 60 1 O ARG A 55 N LEU A 24 SHEET 1 AA2 2 SER A 77 ARG A 83 0 SHEET 2 AA2 2 GLN A 86 ILE A 92 -1 O GLU A 87 N TYR A 82 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1