HEADER VIRAL PROTEIN 26-APR-18 5ZS0 TITLE STRUCTURE OF GLYCOPROTEIN B DOMAIN IV OF PSEUDORABIES VIRUS WITH 7B11 TITLE 2 ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: 7B11 LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: 7B11 HEAVY CHAIN; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: ENVELOPE GLYCOPROTEIN B,ENVELOPE GLYCOPROTEIN B; COMPND 9 CHAIN: C; COMPND 10 SYNONYM: GB,GB; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 6 ORGANISM_TAXID: 10090; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: SUID ALPHAHERPESVIRUS 1; SOURCE 9 ORGANISM_TAXID: 10345; SOURCE 10 GENE: GB; SOURCE 11 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS COMPLEX WITH ANTIBODY, FUSION PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.L.HU,F.L.YANG REVDAT 3 13-NOV-24 5ZS0 1 REMARK REVDAT 2 22-NOV-23 5ZS0 1 REMARK REVDAT 1 22-MAY-19 5ZS0 0 JRNL AUTH X.L.HU,R.C.PENG,X.D.LI JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF PSEUDORABIES VIRUS JRNL TITL 2 GLYCOPROTEIN B BY A COMPLEMENT-DEPENDENT NEUTRALIZING JRNL TITL 3 ANTIBODY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 80.9 REMARK 3 NUMBER OF REFLECTIONS : 12295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.310 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 559 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 117 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 11.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 7 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4628 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.697 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.490 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.436 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.877 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.796 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4728 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4241 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6423 ; 1.695 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9849 ; 1.041 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 596 ; 9.459 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;37.642 ;23.433 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 756 ;21.443 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;16.086 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 720 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5263 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 983 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2402 ; 3.591 ; 6.426 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2401 ; 3.576 ; 6.425 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2992 ; 6.095 ; 9.617 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2993 ; 6.096 ; 9.619 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2326 ; 3.044 ; 6.681 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2327 ; 3.043 ; 6.683 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3432 ; 5.311 ; 9.914 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5141 ; 9.969 ;74.388 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5142 ; 9.970 ;74.407 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZS0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1300007461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14967 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : 0.12000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.69600 REMARK 200 R SYM FOR SHELL (I) : 2.69600 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: 5YS2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM PHOSPHATE DIBASIC AND REMARK 280 20% W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.45700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 97.45700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 97.45700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 97.45700 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 97.45700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 97.45700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR B 128 REMARK 465 PRO B 129 REMARK 465 LEU B 130 REMARK 465 ALA B 131 REMARK 465 PRO B 132 REMARK 465 GLY B 133 REMARK 465 SER B 134 REMARK 465 ALA B 135 REMARK 465 ALA B 136 REMARK 465 GLN B 137 REMARK 465 THR B 138 REMARK 465 ASN B 139 REMARK 465 SER B 140 REMARK 465 MET B 141 REMARK 465 THR C 62 REMARK 465 ARG C 63 REMARK 465 ALA C 64 REMARK 465 ALA C 65 REMARK 465 SER C 66 REMARK 465 ALA C 67 REMARK 465 SER C 68 REMARK 465 PRO C 69 REMARK 465 ALA C 70 REMARK 465 PRO C 71 REMARK 465 GLY C 72 REMARK 465 THR C 73 REMARK 465 GLY C 74 REMARK 465 ALA C 75 REMARK 465 THR C 76 REMARK 465 PRO C 77 REMARK 465 ASP C 78 REMARK 465 GLY C 79 REMARK 465 PHE C 80 REMARK 465 SER C 81 REMARK 465 ALA C 82 REMARK 465 GLU C 83 REMARK 465 GLU C 84 REMARK 465 SER C 85 REMARK 465 LEU C 86 REMARK 465 GLU C 87 REMARK 465 GLU C 88 REMARK 465 ILE C 89 REMARK 465 ASP C 90 REMARK 465 GLY C 91 REMARK 465 ALA C 92 REMARK 465 VAL C 93 REMARK 465 SER C 94 REMARK 465 PRO C 95 REMARK 465 GLY C 96 REMARK 465 PRO C 97 REMARK 465 SER C 98 REMARK 465 ASP C 99 REMARK 465 ALA C 100 REMARK 465 PRO C 101 REMARK 465 ASP C 102 REMARK 465 GLY C 103 REMARK 465 GLU C 104 REMARK 465 TYR C 105 REMARK 465 GLY C 106 REMARK 465 ASP C 107 REMARK 465 LEU C 108 REMARK 465 ASP C 109 REMARK 465 ALA C 110 REMARK 465 PRO C 538 REMARK 465 GLU C 539 REMARK 465 TYR C 540 REMARK 465 SER C 541 REMARK 465 GLY C 542 REMARK 465 GLY C 543 REMARK 465 SER C 544 REMARK 465 GLY C 545 REMARK 465 ASN C 546 REMARK 465 THR C 700 REMARK 465 HIS C 701 REMARK 465 HIS C 702 REMARK 465 HIS C 703 REMARK 465 HIS C 704 REMARK 465 HIS C 705 REMARK 465 HIS C 706 REMARK 465 HIS C 707 REMARK 465 HIS C 708 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 THR C 112 OG1 CG2 REMARK 470 VAL C 114 CG1 CG2 REMARK 470 ARG C 115 CG CD NE CZ NH1 NH2 REMARK 470 THR C 119 OG1 CG2 REMARK 470 ARG C 123 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP C 594 NH2 ARG C 626 2745 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 96 CA - CB - SG ANGL. DEV. = 8.0 DEGREES REMARK 500 LEU B 183 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 13 -158.59 -131.73 REMARK 500 ALA A 32 43.31 -176.90 REMARK 500 ARG A 50 19.31 58.78 REMARK 500 ALA A 51 142.68 59.23 REMARK 500 SER A 52 12.10 54.74 REMARK 500 THR A 56 88.58 -63.32 REMARK 500 SER A 76 -74.10 -62.63 REMARK 500 GLN A 79 -165.64 -127.08 REMARK 500 ALA A 84 -176.81 -174.60 REMARK 500 TYR A 91 44.75 -145.91 REMARK 500 GLU A 105 119.72 -168.90 REMARK 500 ARG A 108 100.61 -161.54 REMARK 500 ASP A 110 -132.80 50.16 REMARK 500 ALA A 111 174.39 118.51 REMARK 500 ASN A 138 72.45 59.04 REMARK 500 ASN A 190 -58.01 -132.86 REMARK 500 THR A 197 66.63 -164.79 REMARK 500 CYS B 22 107.41 -161.10 REMARK 500 SER B 40 -174.60 -57.30 REMARK 500 PRO B 41 7.55 -63.69 REMARK 500 GLU B 42 -54.91 -151.40 REMARK 500 LYS B 43 -150.67 -158.52 REMARK 500 ARG B 44 -26.99 84.13 REMARK 500 LEU B 45 89.52 17.01 REMARK 500 LYS B 76 35.26 -140.25 REMARK 500 ARG B 87 141.84 57.06 REMARK 500 ASP B 89 3.32 -69.67 REMARK 500 GLU B 100 -91.99 -72.28 REMARK 500 ASP B 102 -9.47 -144.12 REMARK 500 LEU B 105 -41.22 -136.81 REMARK 500 GLN B 111 92.00 -160.66 REMARK 500 THR B 116 -26.81 130.91 REMARK 500 VAL B 117 -100.25 -121.05 REMARK 500 THR B 122 -171.82 -65.31 REMARK 500 THR B 123 -14.62 -143.59 REMARK 500 PRO B 124 83.74 -10.26 REMARK 500 PRO B 155 -166.62 -111.05 REMARK 500 SER B 162 75.68 60.44 REMARK 500 SER B 164 -83.37 39.32 REMARK 500 LEU B 165 86.25 -65.50 REMARK 500 SER B 166 -71.53 -60.85 REMARK 500 GLN B 177 -126.52 -89.02 REMARK 500 ASP B 179 23.28 -144.54 REMARK 500 THR C 112 81.28 -69.70 REMARK 500 VAL C 114 81.37 -152.53 REMARK 500 ARG C 115 109.33 -46.59 REMARK 500 THR C 119 -153.14 -120.29 REMARK 500 GLU C 120 -84.72 -150.94 REMARK 500 ASP C 122 76.64 -118.27 REMARK 500 GLU C 141 124.04 -39.90 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN B 3 LEU B 4 -136.02 REMARK 500 LEU B 115 THR B 116 141.70 REMARK 500 THR B 123 PRO B 124 -148.64 REMARK 500 PRO B 124 PRO B 125 142.61 REMARK 500 REMARK 500 REMARK: NULL DBREF 5ZS0 A 1 211 PDB 5ZS0 5ZS0 1 211 DBREF 5ZS0 B 1 219 PDB 5ZS0 5ZS0 1 219 DBREF1 5ZS0 C 62 541 UNP A0A0U3FH21_9ALPH DBREF2 5ZS0 C A0A0U3FH21 62 148 DBREF1 5ZS0 C 546 700 UNP A0A1Q0AKY5_9ALPH DBREF2 5ZS0 C A0A1Q0AKY5 546 700 SEQADV 5ZS0 GLY C 542 UNP A0A0U3FH2 LINKER SEQADV 5ZS0 GLY C 543 UNP A0A0U3FH2 LINKER SEQADV 5ZS0 SER C 544 UNP A0A0U3FH2 LINKER SEQADV 5ZS0 GLY C 545 UNP A0A0U3FH2 LINKER SEQADV 5ZS0 HIS C 701 UNP A0A1Q0AKY EXPRESSION TAG SEQADV 5ZS0 HIS C 702 UNP A0A1Q0AKY EXPRESSION TAG SEQADV 5ZS0 HIS C 703 UNP A0A1Q0AKY EXPRESSION TAG SEQADV 5ZS0 HIS C 704 UNP A0A1Q0AKY EXPRESSION TAG SEQADV 5ZS0 HIS C 705 UNP A0A1Q0AKY EXPRESSION TAG SEQADV 5ZS0 HIS C 706 UNP A0A1Q0AKY EXPRESSION TAG SEQADV 5ZS0 HIS C 707 UNP A0A1Q0AKY EXPRESSION TAG SEQADV 5ZS0 HIS C 708 UNP A0A1Q0AKY EXPRESSION TAG SEQRES 1 A 211 ASP ILE VAL VAL THR GLN SER PRO LYS PHE MET SER THR SEQRES 2 A 211 SER ALA GLY ASP ARG VAL SER ILE THR CYS LYS ALA ARG SEQRES 3 A 211 GLN ASP VAL GLY SER ALA VAL ASN TRP TYR GLN GLN LYS SEQRES 4 A 211 PRO GLY GLN SER PRO LYS LEU LEU ILE TYR ARG ALA SER SEQRES 5 A 211 THR ARG HIS THR GLY VAL PRO ASP ARG PHE THR GLY SER SEQRES 6 A 211 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER VAL SEQRES 7 A 211 GLN SER GLU ASP VAL ALA ASP TYR PHE CYS GLN GLN TYR SEQRES 8 A 211 GLY ASN TYR ASP LEU THR PHE GLY ALA GLY THR LYS LEU SEQRES 9 A 211 GLU LEU LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 A 211 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 A 211 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 A 211 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 A 211 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 A 211 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 A 211 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 A 211 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 A 211 PHE ASN ARG SEQRES 1 B 219 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 B 219 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 B 219 PHE THR PHE ASN ASP TYR ALA MET SER TRP VAL ARG GLN SEQRES 4 B 219 SER PRO GLU LYS ARG LEU GLU TRP VAL ALA THR ILE SER SEQRES 5 B 219 GLY GLY GLY SER TYR SER TYR TYR PRO ASP SER VAL LYS SEQRES 6 B 219 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 219 LEU TYR LEU GLN MET SER SER LEU ARG SER ASP ASP THR SEQRES 8 B 219 ALA ILE TYR TYR CYS THR ARG GLN GLU GLY ASP PHE PRO SEQRES 9 B 219 LEU PHE ASP TYR TRP GLY GLN GLY THR ILE LEU THR VAL SEQRES 10 B 219 SER SER ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU SEQRES 11 B 219 ALA PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR SEQRES 12 B 219 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 B 219 THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 B 219 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 B 219 LEU SER SER SER VAL THR VAL THR SER SER THR TRP PRO SEQRES 16 B 219 SER GLN SER VAL THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 B 219 SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG SEQRES 1 C 254 THR ARG ALA ALA SER ALA SER PRO ALA PRO GLY THR GLY SEQRES 2 C 254 ALA THR PRO ASP GLY PHE SER ALA GLU GLU SER LEU GLU SEQRES 3 C 254 GLU ILE ASP GLY ALA VAL SER PRO GLY PRO SER ASP ALA SEQRES 4 C 254 PRO ASP GLY GLU TYR GLY ASP LEU ASP ALA ARG THR ALA SEQRES 5 C 254 VAL ARG ALA ALA ALA THR GLU ARG ASP ARG PHE TYR VAL SEQRES 6 C 254 CYS PRO PRO PRO SER GLY SER THR VAL VAL ARG LEU GLU SEQRES 7 C 254 PRO GLU GLN ALA CYS PRO GLU TYR SER GLY GLY SER GLY SEQRES 8 C 254 ASN ASP MET LEU SER ARG ILE ALA ALA ALA TRP CYS GLU SEQRES 9 C 254 LEU GLN ASN LYS ASP ARG THR LEU TRP GLY GLU MET SER SEQRES 10 C 254 ARG LEU ASN PRO SER ALA VAL ALA THR ALA ALA LEU GLY SEQRES 11 C 254 GLN ARG VAL SER ALA ARG MET LEU GLY ASP VAL MET ALA SEQRES 12 C 254 ILE SER ARG CYS VAL GLU VAL ARG GLY GLY VAL TYR VAL SEQRES 13 C 254 GLN ASN SER MET ARG VAL PRO GLY GLU ARG GLY THR CYS SEQRES 14 C 254 TYR SER ARG PRO LEU VAL THR PHE GLU HIS ASN GLY THR SEQRES 15 C 254 GLY VAL ILE GLU GLY GLN LEU GLY ASP ASP ASN GLU LEU SEQRES 16 C 254 LEU ILE SER ARG ASP LEU ILE GLU PRO CYS THR GLY ASN SEQRES 17 C 254 HIS ARG ARG TYR PHE LYS LEU GLY GLY GLY TYR VAL TYR SEQRES 18 C 254 TYR GLU ASP TYR SER TYR VAL ARG MET VAL GLU VAL PRO SEQRES 19 C 254 GLU THR ILE SER THR ARG VAL THR LEU ASN LEU THR HIS SEQRES 20 C 254 HIS HIS HIS HIS HIS HIS HIS HELIX 1 AA1 SER A 121 GLY A 128 1 8 HELIX 2 AA2 LYS A 183 ARG A 188 1 6 HELIX 3 AA3 THR B 28 TYR B 32 5 5 HELIX 4 AA4 ARG B 87 THR B 91 5 5 HELIX 5 AA5 SER B 192 GLN B 197 1 6 HELIX 6 AA6 PRO B 206 SER B 209 5 4 HELIX 7 AA7 MET C 548 ASN C 574 1 27 HELIX 8 AA8 ASN C 574 LEU C 583 1 10 SHEET 1 AA1 4 VAL A 4 THR A 5 0 SHEET 2 AA1 4 VAL A 19 ALA A 25 -1 O LYS A 24 N THR A 5 SHEET 3 AA1 4 ASP A 70 ILE A 75 -1 O PHE A 71 N CYS A 23 SHEET 4 AA1 4 PHE A 62 THR A 63 -1 N THR A 63 O THR A 74 SHEET 1 AA2 5 THR A 53 ARG A 54 0 SHEET 2 AA2 5 LYS A 45 TYR A 49 -1 N TYR A 49 O THR A 53 SHEET 3 AA2 5 VAL A 33 GLN A 38 -1 N GLN A 37 O LYS A 45 SHEET 4 AA2 5 ASP A 85 GLN A 90 -1 O PHE A 87 N TYR A 36 SHEET 5 AA2 5 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 AA3 5 THR A 53 ARG A 54 0 SHEET 2 AA3 5 LYS A 45 TYR A 49 -1 N TYR A 49 O THR A 53 SHEET 3 AA3 5 VAL A 33 GLN A 38 -1 N GLN A 37 O LYS A 45 SHEET 4 AA3 5 ASP A 85 GLN A 90 -1 O PHE A 87 N TYR A 36 SHEET 5 AA3 5 THR A 102 LYS A 103 -1 O THR A 102 N TYR A 86 SHEET 1 AA4 4 THR A 114 PHE A 118 0 SHEET 2 AA4 4 GLY A 129 PHE A 139 -1 O ASN A 137 N THR A 114 SHEET 3 AA4 4 TYR A 173 THR A 182 -1 O LEU A 181 N ALA A 130 SHEET 4 AA4 4 VAL A 159 TRP A 163 -1 N SER A 162 O SER A 176 SHEET 1 AA5 4 GLU A 154 ARG A 155 0 SHEET 2 AA5 4 LYS A 147 ILE A 150 -1 N TRP A 148 O ARG A 155 SHEET 3 AA5 4 TYR A 192 GLU A 195 -1 O GLU A 195 N LYS A 147 SHEET 4 AA5 4 VAL A 206 PHE A 209 -1 O PHE A 209 N TYR A 192 SHEET 1 AA6 4 GLN B 3 SER B 7 0 SHEET 2 AA6 4 SER B 17 SER B 25 -1 O SER B 25 N GLN B 3 SHEET 3 AA6 4 THR B 78 SER B 84 -1 O MET B 83 N LEU B 18 SHEET 4 AA6 4 THR B 69 ASP B 73 -1 N SER B 71 O TYR B 80 SHEET 1 AA7 5 SER B 58 TYR B 59 0 SHEET 2 AA7 5 GLU B 46 ILE B 51 -1 N THR B 50 O TYR B 59 SHEET 3 AA7 5 MET B 34 GLN B 39 -1 N ARG B 38 O GLU B 46 SHEET 4 AA7 5 ALA B 92 GLN B 99 -1 O TYR B 95 N VAL B 37 SHEET 5 AA7 5 PRO B 104 ASP B 107 -1 O LEU B 105 N ARG B 98 SHEET 1 AA8 5 SER B 58 TYR B 59 0 SHEET 2 AA8 5 GLU B 46 ILE B 51 -1 N THR B 50 O TYR B 59 SHEET 3 AA8 5 MET B 34 GLN B 39 -1 N ARG B 38 O GLU B 46 SHEET 4 AA8 5 ALA B 92 GLN B 99 -1 O TYR B 95 N VAL B 37 SHEET 5 AA8 5 GLY B 112 THR B 113 -1 O THR B 113 N ALA B 92 SHEET 1 AA9 3 THR B 143 TYR B 151 0 SHEET 2 AA9 3 TYR B 181 THR B 188 -1 O TYR B 181 N TYR B 151 SHEET 3 AA9 3 HIS B 170 THR B 171 -1 N HIS B 170 O SER B 186 SHEET 1 AB1 3 THR B 143 TYR B 151 0 SHEET 2 AB1 3 TYR B 181 THR B 188 -1 O TYR B 181 N TYR B 151 SHEET 3 AB1 3 VAL B 175 LEU B 176 -1 N VAL B 175 O THR B 182 SHEET 1 AB2 2 THR B 200 HIS B 205 0 SHEET 2 AB2 2 THR B 210 LYS B 215 -1 O VAL B 212 N VAL B 203 SHEET 1 AB3 7 VAL C 114 ALA C 117 0 SHEET 2 AB3 7 VAL C 608 GLN C 611 -1 O VAL C 610 N ARG C 115 SHEET 3 AB3 7 LEU C 628 PHE C 631 -1 O THR C 630 N TYR C 609 SHEET 4 AB3 7 ILE C 639 LEU C 643 -1 O ILE C 639 N PHE C 631 SHEET 5 AB3 7 GLU C 648 LEU C 650 -1 O LEU C 650 N GLN C 642 SHEET 6 AB3 7 TYR C 125 VAL C 126 1 N TYR C 125 O LEU C 649 SHEET 7 AB3 7 VAL C 602 GLU C 603 -1 O VAL C 602 N VAL C 126 SHEET 1 AB4 3 THR C 134 VAL C 136 0 SHEET 2 AB4 3 MET C 596 ARG C 600 -1 O MET C 596 N VAL C 136 SHEET 3 AB4 3 VAL C 587 MET C 591 -1 N ARG C 590 O ALA C 597 SHEET 1 AB5 2 THR C 622 TYR C 624 0 SHEET 2 AB5 2 ILE C 656 PRO C 658 -1 O GLU C 657 N CYS C 623 SHEET 1 AB6 3 ARG C 664 LEU C 669 0 SHEET 2 AB6 3 GLY C 672 GLU C 677 -1 O VAL C 674 N PHE C 667 SHEET 3 AB6 3 SER C 680 VAL C 685 -1 O SER C 680 N GLU C 677 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.02 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.03 SSBOND 3 CYS B 22 CYS B 96 1555 1555 2.09 SSBOND 4 CYS B 146 CYS B 201 1555 1555 2.05 SSBOND 5 CYS C 127 CYS C 601 1555 1555 2.04 SSBOND 6 CYS C 144 CYS C 557 1555 1555 2.05 SSBOND 7 CYS C 623 CYS C 659 1555 1555 2.06 CISPEP 1 SER A 7 PRO A 8 0 -1.61 CISPEP 2 TYR A 94 ASP A 95 0 9.45 CISPEP 3 ARG A 108 ALA A 109 0 -19.30 CISPEP 4 TYR A 140 PRO A 141 0 -3.33 CISPEP 5 PHE B 152 PRO B 153 0 -1.09 CISPEP 6 GLU B 154 PRO B 155 0 4.06 CISPEP 7 TRP B 194 PRO B 195 0 6.63 CISPEP 8 GLY C 635 THR C 636 0 -7.28 CRYST1 128.907 128.907 194.914 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007758 0.004479 0.000000 0.00000 SCALE2 0.000000 0.008958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005130 0.00000