HEADER BIOSYNTHETIC PROTEIN 29-APR-18 5ZSP TITLE NIFS FROM HYDROGENIMONAS THERMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE DESULFURASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NIFS; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYDROGENIMONAS THERMOPHILA; SOURCE 3 ORGANISM_TAXID: 223786; SOURCE 4 GENE: SAMN05216234_11013; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C41(DE3) KEYWDS CYSTEINE DESULFURASE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.NAKAMURA,T.FUJISHIRO,Y.TAKAHASHI REVDAT 5 22-NOV-23 5ZSP 1 REMARK REVDAT 4 01-APR-20 5ZSP 1 JRNL REVDAT 3 23-OCT-19 5ZSP 1 JRNL REVDAT 2 16-OCT-19 5ZSP 1 JRNL REVDAT 1 01-MAY-19 5ZSP 0 JRNL AUTH R.NAKAMURA,M.HIKITA,S.OGAWA,Y.TAKAHASHI,T.FUJISHIRO JRNL TITL SNAPSHOTS OF PLP-SUBSTRATE AND PLP-PRODUCT EXTERNAL JRNL TITL 2 ALDIMINES AS INTERMEDIATES IN TWO TYPES OF CYSTEINE JRNL TITL 3 DESULFURASE ENZYMES. JRNL REF FEBS J. V. 287 1138 2020 JRNL REFN ISSN 1742-464X JRNL PMID 31587510 JRNL DOI 10.1111/FEBS.15081 REMARK 2 REMARK 2 RESOLUTION. 2.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 32556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1629 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4930 - 5.8800 1.00 2642 140 0.1658 0.1728 REMARK 3 2 5.8800 - 4.6686 1.00 2607 137 0.1704 0.2241 REMARK 3 3 4.6686 - 4.0789 1.00 2581 136 0.1658 0.1647 REMARK 3 4 4.0789 - 3.7062 1.00 2581 136 0.1978 0.2276 REMARK 3 5 3.7062 - 3.4406 1.00 2583 136 0.2397 0.2710 REMARK 3 6 3.4406 - 3.2378 0.99 2573 134 0.2495 0.2902 REMARK 3 7 3.2378 - 3.0757 1.00 2558 135 0.2828 0.2706 REMARK 3 8 3.0757 - 2.9418 1.00 2556 135 0.3018 0.3548 REMARK 3 9 2.9418 - 2.8286 1.00 2564 135 0.3065 0.3252 REMARK 3 10 2.8286 - 2.7310 1.00 2570 135 0.3046 0.3479 REMARK 3 11 2.7310 - 2.6456 0.99 2547 135 0.3195 0.3422 REMARK 3 12 2.6456 - 2.5700 1.00 2565 135 0.3400 0.3838 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.0982 17.1462 -12.4656 REMARK 3 T TENSOR REMARK 3 T11: 0.5670 T22: 0.5219 REMARK 3 T33: 0.3429 T12: 0.1866 REMARK 3 T13: 0.0027 T23: -0.0594 REMARK 3 L TENSOR REMARK 3 L11: 3.1482 L22: 1.8682 REMARK 3 L33: 2.7605 L12: 1.8553 REMARK 3 L13: 1.5370 L23: 0.7211 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: 0.3921 S13: -0.2795 REMARK 3 S21: -0.0461 S22: 0.0002 S23: 0.0499 REMARK 3 S31: 0.4662 S32: 0.2878 S33: 0.0172 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 78.5505 11.1793 3.4524 REMARK 3 T TENSOR REMARK 3 T11: 0.7549 T22: 0.7955 REMARK 3 T33: 0.4586 T12: 0.2938 REMARK 3 T13: -0.0459 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 1.7518 L22: 2.4982 REMARK 3 L33: 3.2003 L12: 0.0333 REMARK 3 L13: 1.0662 L23: -0.6493 REMARK 3 S TENSOR REMARK 3 S11: 0.1115 S12: 0.0537 S13: -0.3810 REMARK 3 S21: 0.2920 S22: 0.0100 S23: -0.4797 REMARK 3 S31: 0.7075 S32: 0.8242 S33: -0.1575 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 220 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.7769 24.4322 -3.2659 REMARK 3 T TENSOR REMARK 3 T11: 0.4523 T22: 0.6905 REMARK 3 T33: 0.3733 T12: 0.1925 REMARK 3 T13: -0.0106 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 1.5934 L22: 1.7425 REMARK 3 L33: 2.8663 L12: 0.7973 REMARK 3 L13: 0.0887 L23: 1.3180 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: 0.1509 S13: -0.2655 REMARK 3 S21: -0.1167 S22: 0.1603 S23: -0.4222 REMARK 3 S31: 0.2952 S32: 0.8084 S33: -0.1397 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 302 THROUGH 360 ) REMARK 3 ORIGIN FOR THE GROUP (A): 74.4438 34.6321 12.0479 REMARK 3 T TENSOR REMARK 3 T11: 0.5390 T22: 0.6885 REMARK 3 T33: 0.4147 T12: -0.0037 REMARK 3 T13: 0.0023 T23: -0.0324 REMARK 3 L TENSOR REMARK 3 L11: 7.0559 L22: 4.8045 REMARK 3 L33: 6.4127 L12: -2.8583 REMARK 3 L13: 1.8396 L23: 0.0948 REMARK 3 S TENSOR REMARK 3 S11: -0.3722 S12: -0.5265 S13: 0.3551 REMARK 3 S21: 0.7417 S22: 0.2448 S23: -0.7369 REMARK 3 S31: 0.1550 S32: 1.2044 S33: 0.0312 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 361 THROUGH 386 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.7274 47.0282 10.5324 REMARK 3 T TENSOR REMARK 3 T11: 0.5794 T22: 0.4043 REMARK 3 T33: 0.4194 T12: -0.1268 REMARK 3 T13: -0.0149 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 6.6586 L22: 2.5725 REMARK 3 L33: 7.3720 L12: -0.2765 REMARK 3 L13: -2.6064 L23: 6.2670 REMARK 3 S TENSOR REMARK 3 S11: -0.0421 S12: -0.5056 S13: 0.4901 REMARK 3 S21: 0.0187 S22: 0.2365 S23: -0.3648 REMARK 3 S31: -1.3261 S32: 0.6838 S33: -0.3649 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.7122 18.5696 -2.7360 REMARK 3 T TENSOR REMARK 3 T11: 0.6398 T22: 0.4931 REMARK 3 T33: 0.6180 T12: 0.1290 REMARK 3 T13: 0.0443 T23: -0.1397 REMARK 3 L TENSOR REMARK 3 L11: 2.0434 L22: 4.1575 REMARK 3 L33: 2.3698 L12: 2.0595 REMARK 3 L13: 1.1628 L23: 2.3726 REMARK 3 S TENSOR REMARK 3 S11: 0.0758 S12: 0.0788 S13: 0.1352 REMARK 3 S21: 0.4368 S22: -0.4059 S23: 0.8479 REMARK 3 S31: 0.5571 S32: -0.1069 S33: 0.3481 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.8517 -2.9354 8.8894 REMARK 3 T TENSOR REMARK 3 T11: 1.3100 T22: 0.5199 REMARK 3 T33: 0.6731 T12: -0.0761 REMARK 3 T13: 0.0703 T23: -0.0550 REMARK 3 L TENSOR REMARK 3 L11: 2.9652 L22: 2.6925 REMARK 3 L33: 1.7688 L12: 0.8643 REMARK 3 L13: 0.4090 L23: -0.8172 REMARK 3 S TENSOR REMARK 3 S11: 0.3627 S12: -0.3542 S13: -0.7166 REMARK 3 S21: 0.8413 S22: -0.3423 S23: 0.1484 REMARK 3 S31: 1.1211 S32: -0.2476 S33: -0.0210 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 242 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3518 -1.6365 -9.1581 REMARK 3 T TENSOR REMARK 3 T11: 0.8741 T22: 0.7177 REMARK 3 T33: 0.8127 T12: -0.0520 REMARK 3 T13: 0.1129 T23: -0.2568 REMARK 3 L TENSOR REMARK 3 L11: 5.6747 L22: 3.1665 REMARK 3 L33: 3.3704 L12: 3.6354 REMARK 3 L13: 1.4449 L23: 1.8281 REMARK 3 S TENSOR REMARK 3 S11: 0.1107 S12: 0.2074 S13: -0.0153 REMARK 3 S21: 0.4475 S22: -0.4877 S23: 1.0102 REMARK 3 S31: 0.7098 S32: -0.7979 S33: 0.5392 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 306 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4152 -9.8938 -19.0212 REMARK 3 T TENSOR REMARK 3 T11: 0.8708 T22: 0.7068 REMARK 3 T33: 0.8427 T12: 0.1233 REMARK 3 T13: -0.0531 T23: -0.2442 REMARK 3 L TENSOR REMARK 3 L11: 4.7257 L22: 6.6719 REMARK 3 L33: 5.2096 L12: 0.5226 REMARK 3 L13: -0.7227 L23: 1.0535 REMARK 3 S TENSOR REMARK 3 S11: 0.0372 S12: 0.1705 S13: -1.0876 REMARK 3 S21: -0.3950 S22: -0.1742 S23: 0.3150 REMARK 3 S31: 1.3493 S32: -0.0325 S33: 0.2558 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID -1 THROUGH 330 OR REMARK 3 RESID 335 THROUGH 384)) REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 3460 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZSP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1300007569. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR,A REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32592 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.570 REMARK 200 RESOLUTION RANGE LOW (A) : 45.486 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 20.22 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 19.31 REMARK 200 R MERGE FOR SHELL (I) : 0.95100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1EG5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE, 0.1M TRIS REMARK 280 -HCL, 20% (W/V) PEG 8000, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.84000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.92000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.38000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.46000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.30000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 TYR A 387 REMARK 465 MET A 388 REMARK 465 PRO A 389 REMARK 465 ASP A 390 REMARK 465 ASN A 391 REMARK 465 MET A 392 REMARK 465 LYS A 393 REMARK 465 ASP A 394 REMARK 465 LYS A 395 REMARK 465 GLN A 396 REMARK 465 LEU A 397 REMARK 465 GLU A 398 REMARK 465 VAL A 399 REMARK 465 ASP A 400 REMARK 465 LEU A 401 REMARK 465 VAL A 402 REMARK 465 PRO A 403 REMARK 465 ARG A 404 REMARK 465 GLY A 405 REMARK 465 SER A 406 REMARK 465 HIS A 407 REMARK 465 HIS A 408 REMARK 465 HIS A 409 REMARK 465 HIS A 410 REMARK 465 HIS A 411 REMARK 465 HIS A 412 REMARK 465 MET B -2 REMARK 465 LEU B 331 REMARK 465 GLU B 332 REMARK 465 ALA B 333 REMARK 465 ASN B 334 REMARK 465 TYR B 385 REMARK 465 ALA B 386 REMARK 465 TYR B 387 REMARK 465 MET B 388 REMARK 465 PRO B 389 REMARK 465 ASP B 390 REMARK 465 ASN B 391 REMARK 465 MET B 392 REMARK 465 LYS B 393 REMARK 465 ASP B 394 REMARK 465 LYS B 395 REMARK 465 GLN B 396 REMARK 465 LEU B 397 REMARK 465 GLU B 398 REMARK 465 VAL B 399 REMARK 465 ASP B 400 REMARK 465 LEU B 401 REMARK 465 VAL B 402 REMARK 465 PRO B 403 REMARK 465 ARG B 404 REMARK 465 GLY B 405 REMARK 465 SER B 406 REMARK 465 HIS B 407 REMARK 465 HIS B 408 REMARK 465 HIS B 409 REMARK 465 HIS B 410 REMARK 465 HIS B 411 REMARK 465 HIS B 412 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 315 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 110 NE - CZ - NH1 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG B 136 CB - CG - CD ANGL. DEV. = -16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 93 19.26 -157.65 REMARK 500 THR A 140 -169.74 -118.62 REMARK 500 GLU A 230 57.48 -95.58 REMARK 500 GLU A 264 -74.53 -84.67 REMARK 500 ASP B 93 20.37 -157.28 REMARK 500 GLU B 230 58.75 -96.44 REMARK 500 REMARK 500 REMARK: NULL DBREF1 5ZSP A 1 396 UNP A0A1I5NEH3_9PROT DBREF2 5ZSP A A0A1I5NEH3 1 396 DBREF1 5ZSP B 1 396 UNP A0A1I5NEH3_9PROT DBREF2 5ZSP B A0A1I5NEH3 1 396 SEQADV 5ZSP MET A -2 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP ALA A -1 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP HIS A 0 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP LEU A 397 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP GLU A 398 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP VAL A 399 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP ASP A 400 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP LEU A 401 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP VAL A 402 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP PRO A 403 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP ARG A 404 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP GLY A 405 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP SER A 406 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP HIS A 407 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP HIS A 408 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP HIS A 409 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP HIS A 410 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP HIS A 411 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP HIS A 412 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP MET B -2 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP ALA B -1 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP HIS B 0 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP LEU B 397 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP GLU B 398 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP VAL B 399 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP ASP B 400 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP LEU B 401 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP VAL B 402 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP PRO B 403 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP ARG B 404 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP GLY B 405 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP SER B 406 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP HIS B 407 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP HIS B 408 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP HIS B 409 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP HIS B 410 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP HIS B 411 UNP A0A1I5NEH EXPRESSION TAG SEQADV 5ZSP HIS B 412 UNP A0A1I5NEH EXPRESSION TAG SEQRES 1 A 415 MET ALA HIS MET LYS VAL TYR LEU ASP ASN ASN ALA THR SEQRES 2 A 415 THR ILE VAL ASP PRO GLU VAL LYS ALA ALA MET ASP PRO SEQRES 3 A 415 TYR PHE THR GLN ILE TYR GLY ASN PRO ASN SER LEU HIS SEQRES 4 A 415 ASP PHE GLY THR GLU CYS HIS PRO ALA LEU ARG LYS ALA SEQRES 5 A 415 MET ASP GLN MET TYR GLU ALA ILE GLY ALA ARG ASP GLU SEQRES 6 A 415 ASP ASP ILE VAL VAL THR SER CYS ALA THR GLU SER ASN SEQRES 7 A 415 ASN TRP VAL LEU LYS GLY VAL TYR PHE ASP LEU ILE LYS SEQRES 8 A 415 ASN GLY ASP LYS ASP HIS ILE ILE THR THR GLU VAL GLU SEQRES 9 A 415 HIS PRO SER VAL THR ALA THR CYS ARG TRP LEU GLU GLU SEQRES 10 A 415 GLN GLY VAL ARG VAL THR TYR LEU PRO VAL ASN GLN ASP SEQRES 11 A 415 GLY VAL VAL GLU ALA HIS THR VAL ARG ASP PHE ILE THR SEQRES 12 A 415 ASP LYS THR ALA LEU VAL SER ILE MET TRP ALA ASN ASN SEQRES 13 A 415 GLU THR GLY ALA ILE PHE PRO VAL GLU GLU ILE SER GLU SEQRES 14 A 415 ILE CYS LYS GLU LYS GLY VAL LEU PHE HIS THR ASP GLY SEQRES 15 A 415 VAL GLN ALA ILE GLY LYS ILE PRO VAL ASP VAL ILE ARG SEQRES 16 A 415 ALA GLY VAL ASP PHE MET SER PHE SER ALA HIS LLP PHE SEQRES 17 A 415 HIS GLY PRO LYS GLY VAL GLY GLY LEU TYR ILE ARG ASN SEQRES 18 A 415 GLY HIS PRO LEU THR SER LEU LEU HIS GLY GLY GLU HIS SEQRES 19 A 415 MET GLY GLY ARG ARG SER GLY THR LEU ASN VAL PRO GLY SEQRES 20 A 415 ILE VAL GLY MET GLY LYS ALA MET GLU LEU ALA THR TYR SEQRES 21 A 415 TYR LEU LYS PHE GLU GLU GLU HIS VAL ARG LYS LEU ARG SEQRES 22 A 415 ASP LYS LEU GLU ASP ALA ILE LEU GLU ILE PRO ASP THR SEQRES 23 A 415 TYR SER VAL GLY PRO ARG GLU ASN ARG THR PRO ASN THR SEQRES 24 A 415 ILE LEU VAL SER VAL ARG GLY VAL GLU GLY GLU ALA MET SEQRES 25 A 415 LEU TRP ASP LEU ASN ARG ALA GLY ILE ALA ALA SER THR SEQRES 26 A 415 GLY SER ALA CYS ALA SER GLU ASP LEU GLU ALA ASN PRO SEQRES 27 A 415 ILE MET VAL ALA VAL GLY ALA ASP SER GLU LEU ALA HIS SEQRES 28 A 415 THR ALA VAL ARG LEU SER LEU SER ARG PHE THR THR GLU SEQRES 29 A 415 GLU GLU ILE ASP TYR THR ILE GLU GLN PHE LYS LYS ALA SEQRES 30 A 415 VAL GLU ARG LEU ARG SER ILE SER SER SER TYR ALA TYR SEQRES 31 A 415 MET PRO ASP ASN MET LYS ASP LYS GLN LEU GLU VAL ASP SEQRES 32 A 415 LEU VAL PRO ARG GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 415 MET ALA HIS MET LYS VAL TYR LEU ASP ASN ASN ALA THR SEQRES 2 B 415 THR ILE VAL ASP PRO GLU VAL LYS ALA ALA MET ASP PRO SEQRES 3 B 415 TYR PHE THR GLN ILE TYR GLY ASN PRO ASN SER LEU HIS SEQRES 4 B 415 ASP PHE GLY THR GLU CYS HIS PRO ALA LEU ARG LYS ALA SEQRES 5 B 415 MET ASP GLN MET TYR GLU ALA ILE GLY ALA ARG ASP GLU SEQRES 6 B 415 ASP ASP ILE VAL VAL THR SER CYS ALA THR GLU SER ASN SEQRES 7 B 415 ASN TRP VAL LEU LYS GLY VAL TYR PHE ASP LEU ILE LYS SEQRES 8 B 415 ASN GLY ASP LYS ASP HIS ILE ILE THR THR GLU VAL GLU SEQRES 9 B 415 HIS PRO SER VAL THR ALA THR CYS ARG TRP LEU GLU GLU SEQRES 10 B 415 GLN GLY VAL ARG VAL THR TYR LEU PRO VAL ASN GLN ASP SEQRES 11 B 415 GLY VAL VAL GLU ALA HIS THR VAL ARG ASP PHE ILE THR SEQRES 12 B 415 ASP LYS THR ALA LEU VAL SER ILE MET TRP ALA ASN ASN SEQRES 13 B 415 GLU THR GLY ALA ILE PHE PRO VAL GLU GLU ILE SER GLU SEQRES 14 B 415 ILE CYS LYS GLU LYS GLY VAL LEU PHE HIS THR ASP GLY SEQRES 15 B 415 VAL GLN ALA ILE GLY LYS ILE PRO VAL ASP VAL ILE ARG SEQRES 16 B 415 ALA GLY VAL ASP PHE MET SER PHE SER ALA HIS LLP PHE SEQRES 17 B 415 HIS GLY PRO LYS GLY VAL GLY GLY LEU TYR ILE ARG ASN SEQRES 18 B 415 GLY HIS PRO LEU THR SER LEU LEU HIS GLY GLY GLU HIS SEQRES 19 B 415 MET GLY GLY ARG ARG SER GLY THR LEU ASN VAL PRO GLY SEQRES 20 B 415 ILE VAL GLY MET GLY LYS ALA MET GLU LEU ALA THR TYR SEQRES 21 B 415 TYR LEU LYS PHE GLU GLU GLU HIS VAL ARG LYS LEU ARG SEQRES 22 B 415 ASP LYS LEU GLU ASP ALA ILE LEU GLU ILE PRO ASP THR SEQRES 23 B 415 TYR SER VAL GLY PRO ARG GLU ASN ARG THR PRO ASN THR SEQRES 24 B 415 ILE LEU VAL SER VAL ARG GLY VAL GLU GLY GLU ALA MET SEQRES 25 B 415 LEU TRP ASP LEU ASN ARG ALA GLY ILE ALA ALA SER THR SEQRES 26 B 415 GLY SER ALA CYS ALA SER GLU ASP LEU GLU ALA ASN PRO SEQRES 27 B 415 ILE MET VAL ALA VAL GLY ALA ASP SER GLU LEU ALA HIS SEQRES 28 B 415 THR ALA VAL ARG LEU SER LEU SER ARG PHE THR THR GLU SEQRES 29 B 415 GLU GLU ILE ASP TYR THR ILE GLU GLN PHE LYS LYS ALA SEQRES 30 B 415 VAL GLU ARG LEU ARG SER ILE SER SER SER TYR ALA TYR SEQRES 31 B 415 MET PRO ASP ASN MET LYS ASP LYS GLN LEU GLU VAL ASP SEQRES 32 B 415 LEU VAL PRO ARG GLY SER HIS HIS HIS HIS HIS HIS MODRES 5ZSP LLP A 204 LYS MODIFIED RESIDUE MODRES 5ZSP LLP B 204 LYS MODIFIED RESIDUE HET LLP A 204 24 HET LLP B 204 24 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 HOH *43(H2 O) HELIX 1 AA1 ASP A 14 ASP A 22 1 9 HELIX 2 AA2 PRO A 23 PHE A 25 5 3 HELIX 3 AA3 HIS A 36 GLU A 41 1 6 HELIX 4 AA4 CYS A 42 GLY A 58 1 17 HELIX 5 AA5 CYS A 70 ILE A 87 1 18 HELIX 6 AA6 HIS A 102 GLN A 115 1 14 HELIX 7 AA7 GLU A 131 ILE A 139 1 9 HELIX 8 AA8 PRO A 160 GLY A 172 1 13 HELIX 9 AA9 HIS A 203 PHE A 205 5 3 HELIX 10 AB1 ASN A 218 HIS A 220 5 3 HELIX 11 AB2 ASN A 241 GLU A 279 1 39 HELIX 12 AB3 PRO A 288 ARG A 292 5 5 HELIX 13 AB4 GLU A 305 ALA A 316 1 12 HELIX 14 AB5 THR A 360 SER A 380 1 21 HELIX 15 AB6 ASP B 14 ASP B 22 1 9 HELIX 16 AB7 PRO B 23 PHE B 25 5 3 HELIX 17 AB8 HIS B 36 GLU B 41 1 6 HELIX 18 AB9 CYS B 42 GLY B 58 1 17 HELIX 19 AC1 CYS B 70 ILE B 87 1 18 HELIX 20 AC2 HIS B 102 GLN B 115 1 14 HELIX 21 AC3 GLU B 131 ILE B 139 1 9 HELIX 22 AC4 PRO B 160 GLY B 172 1 13 HELIX 23 AC5 HIS B 203 PHE B 205 5 3 HELIX 24 AC6 ASN B 218 HIS B 220 5 3 HELIX 25 AC7 ASN B 241 GLU B 262 1 22 HELIX 26 AC8 GLU B 262 GLU B 279 1 18 HELIX 27 AC9 PRO B 288 ARG B 292 5 5 HELIX 28 AD1 GLU B 305 ALA B 316 1 12 HELIX 29 AD2 THR B 360 SER B 380 1 21 SHEET 1 AA1 2 VAL A 3 TYR A 4 0 SHEET 2 AA1 2 ILE A 318 ALA A 319 1 O ALA A 319 N VAL A 3 SHEET 1 AA2 7 ASP A 64 THR A 68 0 SHEET 2 AA2 7 GLY A 212 ILE A 216 -1 O ILE A 216 N ASP A 64 SHEET 3 AA2 7 PHE A 197 SER A 201 -1 N MET A 198 O TYR A 215 SHEET 4 AA2 7 LEU A 174 ASP A 178 1 N THR A 177 O PHE A 197 SHEET 5 AA2 7 THR A 143 SER A 147 1 N VAL A 146 O HIS A 176 SHEET 6 AA2 7 HIS A 94 THR A 98 1 N ILE A 96 O SER A 147 SHEET 7 AA2 7 ARG A 118 LEU A 122 1 O LEU A 122 N THR A 97 SHEET 1 AA3 5 THR A 283 SER A 285 0 SHEET 2 AA3 5 THR A 296 VAL A 301 -1 O SER A 300 N TYR A 284 SHEET 3 AA3 5 HIS A 348 SER A 354 -1 O LEU A 353 N ILE A 297 SHEET 4 AA3 5 SER A 321 GLU A 329 -1 N GLY A 323 O ALA A 350 SHEET 5 AA3 5 PRO A 335 ALA A 339 -1 O ILE A 336 N SER A 328 SHEET 1 AA4 2 VAL B 3 TYR B 4 0 SHEET 2 AA4 2 ILE B 318 ALA B 319 1 O ALA B 319 N VAL B 3 SHEET 1 AA5 7 ASP B 64 THR B 68 0 SHEET 2 AA5 7 GLY B 212 ILE B 216 -1 O ILE B 216 N ASP B 64 SHEET 3 AA5 7 PHE B 197 SER B 201 -1 N MET B 198 O TYR B 215 SHEET 4 AA5 7 LEU B 174 ASP B 178 1 N THR B 177 O SER B 199 SHEET 5 AA5 7 THR B 143 SER B 147 1 N VAL B 146 O HIS B 176 SHEET 6 AA5 7 HIS B 94 THR B 98 1 N HIS B 94 O ALA B 144 SHEET 7 AA5 7 ARG B 118 LEU B 122 1 O LEU B 122 N THR B 97 SHEET 1 AA6 5 THR B 283 SER B 285 0 SHEET 2 AA6 5 THR B 296 VAL B 301 -1 O SER B 300 N TYR B 284 SHEET 3 AA6 5 HIS B 348 SER B 354 -1 O LEU B 353 N ILE B 297 SHEET 4 AA6 5 SER B 321 SER B 328 -1 N SER B 321 O ARG B 352 SHEET 5 AA6 5 ILE B 336 ALA B 339 -1 O VAL B 338 N CYS B 326 LINK C HIS A 203 N LLP A 204 1555 1555 1.34 LINK C LLP A 204 N PHE A 205 1555 1555 1.33 LINK C HIS B 203 N LLP B 204 1555 1555 1.33 LINK C LLP B 204 N PHE B 205 1555 1555 1.32 CRYST1 134.940 134.940 98.760 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007411 0.004279 0.000000 0.00000 SCALE2 0.000000 0.008557 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010126 0.00000