HEADER VIRAL PROTEIN 07-MAY-18 5ZU9 TITLE CRYSTAL STRUCTURE OF MERS-COV MACRO DOMAIN IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF1A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MACRO DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MIDDLE EAST RESPIRATORY SYNDROME-RELATED SOURCE 3 CORONAVIRUS; SOURCE 4 ORGANISM_TAXID: 1335626; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LIGAND, COMPLEX, MACRO DOMAIN, ADP, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.-H.LIN,C.-C.CHO,C.-Y.CHIEN,C.-H.HSU REVDAT 2 22-NOV-23 5ZU9 1 REMARK REVDAT 1 05-JUN-19 5ZU9 0 JRNL AUTH M.-H.LIN,C.-C.CHO,C.-Y.CHIEN,C.-H.HSU JRNL TITL CRYSTAL STRUCTURE OF MERS-COV MACRO DOMAIN IN COMPLEX WITH JRNL TITL 2 ADP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 23047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.680 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.2440 - 3.6102 1.00 1571 149 0.1370 0.1663 REMARK 3 2 3.6102 - 2.8665 1.00 1522 145 0.1410 0.1532 REMARK 3 3 2.8665 - 2.5044 1.00 1525 145 0.1530 0.1766 REMARK 3 4 2.5044 - 2.2755 1.00 1507 144 0.1577 0.1796 REMARK 3 5 2.2755 - 2.1125 1.00 1518 144 0.1364 0.1711 REMARK 3 6 2.1125 - 1.9879 1.00 1496 141 0.1417 0.1594 REMARK 3 7 1.9879 - 1.8884 1.00 1500 143 0.1472 0.1917 REMARK 3 8 1.8884 - 1.8062 1.00 1525 145 0.1584 0.1858 REMARK 3 9 1.8062 - 1.7367 1.00 1487 141 0.1624 0.1980 REMARK 3 10 1.7367 - 1.6768 1.00 1521 145 0.1638 0.2123 REMARK 3 11 1.6768 - 1.6244 1.00 1496 141 0.1776 0.2110 REMARK 3 12 1.6244 - 1.5779 1.00 1501 144 0.1692 0.1941 REMARK 3 13 1.5779 - 1.5364 0.99 1482 140 0.1923 0.2291 REMARK 3 14 1.5364 - 1.4989 0.92 1396 133 0.2108 0.2356 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1276 REMARK 3 ANGLE : 0.894 1738 REMARK 3 CHIRALITY : 0.080 211 REMARK 3 PLANARITY : 0.005 215 REMARK 3 DIHEDRAL : 4.867 453 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4905 -1.7091 6.1133 REMARK 3 T TENSOR REMARK 3 T11: 0.0846 T22: 0.1921 REMARK 3 T33: 0.1585 T12: 0.0012 REMARK 3 T13: 0.0316 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 3.0303 L22: 6.2406 REMARK 3 L33: 6.7028 L12: 0.1353 REMARK 3 L13: 2.4135 L23: -3.1855 REMARK 3 S TENSOR REMARK 3 S11: -0.0600 S12: 0.2145 S13: -0.1969 REMARK 3 S21: -0.2277 S22: 0.1662 S23: -0.0987 REMARK 3 S31: 0.0940 S32: 0.2173 S33: -0.1406 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2548 0.6675 3.3406 REMARK 3 T TENSOR REMARK 3 T11: 0.1089 T22: 0.1259 REMARK 3 T33: 0.1068 T12: -0.0168 REMARK 3 T13: 0.0228 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 3.4044 L22: 3.9633 REMARK 3 L33: 0.8539 L12: 0.0212 REMARK 3 L13: 0.1625 L23: 1.5363 REMARK 3 S TENSOR REMARK 3 S11: -0.1612 S12: 0.2812 S13: 0.1121 REMARK 3 S21: -0.2538 S22: 0.0252 S23: 0.0374 REMARK 3 S31: -0.2399 S32: 0.0926 S33: 0.1139 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7447 -6.0896 3.8571 REMARK 3 T TENSOR REMARK 3 T11: 0.1019 T22: 0.1122 REMARK 3 T33: 0.0944 T12: -0.0194 REMARK 3 T13: -0.0141 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 6.5124 L22: 2.8079 REMARK 3 L33: 4.3306 L12: -0.4309 REMARK 3 L13: -2.9523 L23: 0.5397 REMARK 3 S TENSOR REMARK 3 S11: -0.1129 S12: 0.3031 S13: -0.1135 REMARK 3 S21: -0.1758 S22: 0.0038 S23: -0.0784 REMARK 3 S31: 0.1390 S32: -0.0924 S33: 0.0995 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4867 1.9094 4.6308 REMARK 3 T TENSOR REMARK 3 T11: 0.0812 T22: 0.0960 REMARK 3 T33: 0.1163 T12: 0.0149 REMARK 3 T13: -0.0191 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 2.0416 L22: 2.9152 REMARK 3 L33: 3.4435 L12: 0.8173 REMARK 3 L13: -1.2266 L23: -1.5584 REMARK 3 S TENSOR REMARK 3 S11: 0.0492 S12: 0.0299 S13: 0.0943 REMARK 3 S21: -0.0165 S22: -0.0267 S23: 0.0204 REMARK 3 S31: -0.1645 S32: -0.1488 S33: -0.0729 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3114 -6.1291 3.8269 REMARK 3 T TENSOR REMARK 3 T11: 0.0964 T22: 0.1319 REMARK 3 T33: 0.1289 T12: -0.0044 REMARK 3 T13: -0.0421 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 8.5572 L22: 5.4208 REMARK 3 L33: 5.5288 L12: 3.9650 REMARK 3 L13: -5.0645 L23: -1.5370 REMARK 3 S TENSOR REMARK 3 S11: -0.0781 S12: 0.1370 S13: -0.1989 REMARK 3 S21: -0.2353 S22: -0.0051 S23: 0.2739 REMARK 3 S31: 0.1430 S32: -0.3746 S33: 0.0369 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6667 -4.6980 11.7483 REMARK 3 T TENSOR REMARK 3 T11: 0.0911 T22: 0.1038 REMARK 3 T33: 0.1125 T12: -0.0005 REMARK 3 T13: -0.0052 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.4186 L22: 1.3843 REMARK 3 L33: 1.7652 L12: 0.0734 REMARK 3 L13: 0.0926 L23: -0.0594 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: -0.0650 S13: 0.0383 REMARK 3 S21: 0.0769 S22: 0.0338 S23: 0.1008 REMARK 3 S31: 0.0157 S32: -0.1520 S33: -0.0018 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3686 -3.7511 17.1211 REMARK 3 T TENSOR REMARK 3 T11: 0.0967 T22: 0.1053 REMARK 3 T33: 0.1024 T12: 0.0010 REMARK 3 T13: -0.0039 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.7998 L22: 2.5022 REMARK 3 L33: 2.7061 L12: -0.1858 REMARK 3 L13: -0.5440 L23: 1.3066 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: -0.1094 S13: -0.0063 REMARK 3 S21: 0.1391 S22: 0.0134 S23: 0.0643 REMARK 3 S31: 0.0103 S32: 0.0600 S33: -0.0114 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5481 -3.7300 10.2590 REMARK 3 T TENSOR REMARK 3 T11: 0.0888 T22: 0.1013 REMARK 3 T33: 0.0810 T12: 0.0069 REMARK 3 T13: 0.0058 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 2.6001 L22: 1.9453 REMARK 3 L33: 2.5417 L12: -0.3442 REMARK 3 L13: 0.6065 L23: -2.0759 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: 0.0425 S13: -0.0460 REMARK 3 S21: 0.1609 S22: 0.0271 S23: 0.2680 REMARK 3 S31: 0.1303 S32: 0.1086 S33: -0.0442 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8667 8.8669 14.4868 REMARK 3 T TENSOR REMARK 3 T11: 0.1221 T22: 0.1653 REMARK 3 T33: 0.1909 T12: -0.0387 REMARK 3 T13: 0.0084 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 1.8475 L22: 8.9135 REMARK 3 L33: 9.5038 L12: -2.6486 REMARK 3 L13: 0.9541 L23: 1.6416 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: -0.4707 S13: 0.7375 REMARK 3 S21: 0.1593 S22: -0.0270 S23: -0.3007 REMARK 3 S31: -0.4002 S32: 0.3607 S33: 0.1295 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1300007451. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23151 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.499 REMARK 200 RESOLUTION RANGE LOW (A) : 28.239 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8370 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.941 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DUS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M SODIUM CITRATE, 0.1M HEPES SODIUM REMARK 280 PH7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 19.71150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 457 O HOH A 471 1.87 REMARK 500 O HOH A 378 O HOH A 396 1.97 REMARK 500 O HOH A 301 O HOH A 403 2.03 REMARK 500 O HOH A 425 O HOH A 426 2.06 REMARK 500 O HOH A 314 O HOH A 448 2.09 REMARK 500 SD MET A 114 O HOH A 452 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 450 O HOH A 485 2655 2.05 REMARK 500 O HOH A 377 O HOH A 396 2555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 43 67.66 -100.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 201 DBREF 5ZU9 A 1 164 UNP T2B9G2 T2B9G2_9BETC 1110 1273 SEQADV 5ZU9 GLY A -3 UNP T2B9G2 EXPRESSION TAG SEQADV 5ZU9 SER A -2 UNP T2B9G2 EXPRESSION TAG SEQADV 5ZU9 HIS A -1 UNP T2B9G2 EXPRESSION TAG SEQADV 5ZU9 MET A 0 UNP T2B9G2 EXPRESSION TAG SEQRES 1 A 168 GLY SER HIS MET PRO LEU SER ASN PHE GLU HIS LYS VAL SEQRES 2 A 168 ILE THR GLU CYS VAL THR ILE VAL LEU GLY ASP ALA ILE SEQRES 3 A 168 GLN VAL ALA LYS CYS TYR GLY GLU SER VAL LEU VAL ASN SEQRES 4 A 168 ALA ALA ASN THR HIS LEU LYS HIS GLY GLY GLY ILE ALA SEQRES 5 A 168 GLY ALA ILE ASN ALA ALA SER LYS GLY ALA VAL GLN LYS SEQRES 6 A 168 GLU SER ASP GLU TYR ILE LEU ALA LYS GLY PRO LEU GLN SEQRES 7 A 168 VAL GLY ASP SER VAL LEU LEU GLN GLY HIS SER LEU ALA SEQRES 8 A 168 LYS ASN ILE LEU HIS VAL VAL GLY PRO ASP ALA ARG ALA SEQRES 9 A 168 LYS GLN ASP VAL SER LEU LEU SER LYS CYS TYR LYS ALA SEQRES 10 A 168 MET ASN ALA TYR PRO LEU VAL VAL THR PRO LEU VAL SER SEQRES 11 A 168 ALA GLY ILE PHE GLY VAL LYS PRO ALA VAL SER PHE ASP SEQRES 12 A 168 TYR LEU ILE ARG GLU ALA LYS THR ARG VAL LEU VAL VAL SEQRES 13 A 168 VAL ASN SER GLN ASP VAL TYR LYS SER LEU THR ILE HET ADP A 201 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 HOH *191(H2 O) HELIX 1 AA1 MET A 0 PHE A 5 5 6 HELIX 2 AA2 ASP A 20 CYS A 27 1 8 HELIX 3 AA3 GLY A 45 SER A 55 1 11 HELIX 4 AA4 GLY A 57 GLY A 71 1 15 HELIX 5 AA5 ASP A 97 LYS A 101 5 5 HELIX 6 AA6 ASP A 103 SER A 105 5 3 HELIX 7 AA7 LEU A 106 ALA A 113 1 8 HELIX 8 AA8 MET A 114 TYR A 117 5 4 HELIX 9 AA9 LYS A 133 ALA A 145 1 13 HELIX 10 AB1 SER A 155 ILE A 164 1 10 SHEET 1 AA1 7 HIS A 7 VAL A 9 0 SHEET 2 AA1 7 VAL A 14 LEU A 18 -1 O ILE A 16 N LYS A 8 SHEET 3 AA1 7 ARG A 148 VAL A 153 1 O VAL A 151 N THR A 15 SHEET 4 AA1 7 LEU A 119 THR A 122 1 N VAL A 120 O LEU A 150 SHEET 5 AA1 7 VAL A 32 ALA A 37 1 N VAL A 34 O VAL A 121 SHEET 6 AA1 7 ASN A 89 VAL A 94 1 O VAL A 93 N ALA A 37 SHEET 7 AA1 7 SER A 78 GLN A 82 -1 N LEU A 81 O ILE A 90 SITE 1 AC1 24 ASP A 20 ALA A 21 ALA A 36 GLY A 46 SITE 2 AC1 24 ILE A 47 LEU A 124 SER A 126 ALA A 127 SITE 3 AC1 24 GLY A 128 ILE A 129 PHE A 130 VAL A 152 SITE 4 AC1 24 ASN A 154 HOH A 301 HOH A 305 HOH A 311 SITE 5 AC1 24 HOH A 316 HOH A 318 HOH A 351 HOH A 366 SITE 6 AC1 24 HOH A 387 HOH A 390 HOH A 394 HOH A 403 CRYST1 41.421 39.423 45.514 90.00 102.30 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024142 0.000000 0.005266 0.00000 SCALE2 0.000000 0.025366 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022488 0.00000