HEADER VIRAL PROTEIN 10-MAY-18 5ZVC TITLE P DOMAIN OF GII.13 NOROVIRUS CAPSID COMPLEXED WITH LEWIS A TITLE 2 TRISACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR CAPSID PROTEIN VP1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS HU/GII.13/10N4598/2010/NP; SOURCE 3 ORGANISM_TAXID: 1313163; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS CAPSID, PROTRUDING DOMAIN, DIMER, HBGA RECOGNITION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHEN,X.LI REVDAT 5 22-NOV-23 5ZVC 1 HETSYN REVDAT 4 05-AUG-20 5ZVC 1 REMARK LINK ATOM REVDAT 3 29-JUL-20 5ZVC 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 17-APR-19 5ZVC 1 JRNL REVDAT 1 03-OCT-18 5ZVC 0 JRNL AUTH Y.QIAN,M.SONG,X.JIANG,M.XIA,J.MELLER,M.TAN,Y.CHEN,X.LI,Z.RAO JRNL TITL STRUCTURAL ADAPTATIONS OF NOROVIRUS GII.17/13/21 LINEAGE JRNL TITL 2 THROUGH TWO DISTINCT EVOLUTIONARY PATHS. JRNL REF J. VIROL. V. 93 2019 JRNL REFN ESSN 1098-5514 JRNL PMID 30333166 JRNL DOI 10.1128/JVI.01655-18 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 54548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2912 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2631 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 659 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 1.50000 REMARK 3 B33 (A**2) : -1.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.313 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.842 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5014 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4591 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6869 ; 1.157 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10571 ; 0.853 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 617 ; 6.426 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 234 ;37.053 ;24.530 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 718 ;11.233 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;14.405 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 780 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5765 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1189 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2474 ; 1.455 ; 2.133 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2473 ; 1.456 ; 2.132 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3089 ; 1.757 ; 3.197 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3090 ; 1.757 ; 3.198 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2540 ; 1.644 ; 2.393 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2541 ; 1.644 ; 2.393 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3781 ; 1.938 ; 3.520 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6064 ; 2.944 ;18.980 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5692 ; 2.471 ;18.148 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 9605 ; 1.299 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 180 ;20.040 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 9950 ; 5.648 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 225 531 B 225 531 17575 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZVC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1300007710. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57510 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.47400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ZV9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SUCCINIC ACID (PH 7.0), 15% (W/V) REMARK 280 POLYETHYLENE GLYCOL (PEG) 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.61500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.07100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.30900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.07100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.61500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.30900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 222 REMARK 465 LYS A 223 REMARK 465 THR A 224 REMARK 465 GLY A 533 REMARK 465 THR A 534 REMARK 465 GLY A 535 REMARK 465 ASN A 536 REMARK 465 GLY A 537 REMARK 465 ARG A 538 REMARK 465 SER B 222 REMARK 465 LYS B 223 REMARK 465 GLY B 535 REMARK 465 ASN B 536 REMARK 465 GLY B 537 REMARK 465 ARG B 538 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 709 O HOH A 750 2.13 REMARK 500 O HOH B 913 O HOH B 944 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 486 O HOH B 763 4467 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 255 -127.05 53.63 REMARK 500 GLN A 260 46.61 -142.83 REMARK 500 TRP A 298 -72.50 -99.47 REMARK 500 GLN A 338 -146.71 -135.51 REMARK 500 ASN A 350 42.04 -99.31 REMARK 500 THR A 376 -51.78 -143.66 REMARK 500 GLU B 255 -125.98 52.72 REMARK 500 GLN B 260 46.30 -142.35 REMARK 500 TRP B 298 -74.11 -99.07 REMARK 500 GLN B 338 -147.38 -135.53 REMARK 500 ASN B 350 42.02 -98.90 REMARK 500 GLU B 377 148.86 71.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 990 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH A 991 DISTANCE = 7.51 ANGSTROMS REMARK 525 HOH A 994 DISTANCE = 8.87 ANGSTROMS REMARK 525 HOH A 996 DISTANCE = 9.42 ANGSTROMS REMARK 525 HOH A 997 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH B1057 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B1058 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH B1060 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH B1061 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH B1062 DISTANCE = 8.91 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ZV9 RELATED DB: PDB REMARK 900 5ZV9 CONTAINS THE SAME PROTEIN IN ITS NATIVE FORM. DBREF1 5ZVC A 222 538 UNP A0A0D6CBA8_9CALI DBREF2 5ZVC A A0A0D6CBA8 222 538 DBREF1 5ZVC B 222 538 UNP A0A0D6CBA8_9CALI DBREF2 5ZVC B A0A0D6CBA8 222 538 SEQRES 1 A 317 SER LYS THR LYS PRO PHE THR LEU PRO ILE LEU THR ILE SEQRES 2 A 317 SER GLU LEU THR ASN SER ARG PHE PRO ILE PRO ILE GLU SEQRES 3 A 317 GLN LEU TYR THR ALA PRO ASN GLU ASN ASN VAL VAL GLN SEQRES 4 A 317 CYS GLN ASN GLY ARG CYS THR LEU ASP GLY GLU LEU GLN SEQRES 5 A 317 GLY THR THR GLN LEU LEU SER SER ALA VAL CYS SER TYR SEQRES 6 A 317 ARG GLY ARG THR VAL ALA ASN SER GLY ASP ASN TRP ASP SEQRES 7 A 317 GLN ASN LEU LEU GLN LEU THR TYR PRO SER GLY ALA SER SEQRES 8 A 317 TYR ASP PRO THR ASP GLU VAL PRO ALA PRO LEU GLY THR SEQRES 9 A 317 GLN ASP PHE ARG GLY ILE LEU TYR GLY VAL LEU THR GLN SEQRES 10 A 317 ASP ASN VAL SER GLU GLY THR GLY GLU ALA LYS ASN ALA SEQRES 11 A 317 LYS GLY VAL TYR ILE SER THR THR SER GLY LYS PHE THR SEQRES 12 A 317 PRO LYS ILE GLY SER ILE GLY LEU HIS SER ILE THR GLU SEQRES 13 A 317 ASN VAL HIS PRO ASN GLN GLN SER ARG PHE THR PRO VAL SEQRES 14 A 317 GLY VAL ALA GLN ASN GLU ASN THR PRO PHE GLN GLN TRP SEQRES 15 A 317 VAL LEU PRO HIS TYR ALA GLY ALA LEU ALA LEU ASN THR SEQRES 16 A 317 ASN LEU ALA PRO ALA VAL ALA PRO THR PHE PRO GLY GLU SEQRES 17 A 317 GLN LEU LEU PHE PHE ARG SER ARG VAL PRO CYS VAL GLN SEQRES 18 A 317 GLY LEU ARG GLY GLN ASP ALA PHE ILE ASP CYS LEU LEU SEQRES 19 A 317 PRO GLN GLU TRP VAL ASN HIS PHE TYR GLN GLU ALA ALA SEQRES 20 A 317 PRO SER GLN ALA ASP VAL ALA LEU ILE ARG TYR VAL ASN SEQRES 21 A 317 PRO ASP THR GLY ARG THR LEU PHE GLU ALA LYS LEU HIS SEQRES 22 A 317 ARG SER GLY PHE ILE THR VAL SER HIS THR GLY ALA TYR SEQRES 23 A 317 PRO LEU VAL VAL PRO PRO ASN GLY HIS PHE ARG PHE ASP SEQRES 24 A 317 SER TRP VAL ASN GLN PHE TYR SER LEU ALA PRO MET GLY SEQRES 25 A 317 THR GLY ASN GLY ARG SEQRES 1 B 317 SER LYS THR LYS PRO PHE THR LEU PRO ILE LEU THR ILE SEQRES 2 B 317 SER GLU LEU THR ASN SER ARG PHE PRO ILE PRO ILE GLU SEQRES 3 B 317 GLN LEU TYR THR ALA PRO ASN GLU ASN ASN VAL VAL GLN SEQRES 4 B 317 CYS GLN ASN GLY ARG CYS THR LEU ASP GLY GLU LEU GLN SEQRES 5 B 317 GLY THR THR GLN LEU LEU SER SER ALA VAL CYS SER TYR SEQRES 6 B 317 ARG GLY ARG THR VAL ALA ASN SER GLY ASP ASN TRP ASP SEQRES 7 B 317 GLN ASN LEU LEU GLN LEU THR TYR PRO SER GLY ALA SER SEQRES 8 B 317 TYR ASP PRO THR ASP GLU VAL PRO ALA PRO LEU GLY THR SEQRES 9 B 317 GLN ASP PHE ARG GLY ILE LEU TYR GLY VAL LEU THR GLN SEQRES 10 B 317 ASP ASN VAL SER GLU GLY THR GLY GLU ALA LYS ASN ALA SEQRES 11 B 317 LYS GLY VAL TYR ILE SER THR THR SER GLY LYS PHE THR SEQRES 12 B 317 PRO LYS ILE GLY SER ILE GLY LEU HIS SER ILE THR GLU SEQRES 13 B 317 ASN VAL HIS PRO ASN GLN GLN SER ARG PHE THR PRO VAL SEQRES 14 B 317 GLY VAL ALA GLN ASN GLU ASN THR PRO PHE GLN GLN TRP SEQRES 15 B 317 VAL LEU PRO HIS TYR ALA GLY ALA LEU ALA LEU ASN THR SEQRES 16 B 317 ASN LEU ALA PRO ALA VAL ALA PRO THR PHE PRO GLY GLU SEQRES 17 B 317 GLN LEU LEU PHE PHE ARG SER ARG VAL PRO CYS VAL GLN SEQRES 18 B 317 GLY LEU ARG GLY GLN ASP ALA PHE ILE ASP CYS LEU LEU SEQRES 19 B 317 PRO GLN GLU TRP VAL ASN HIS PHE TYR GLN GLU ALA ALA SEQRES 20 B 317 PRO SER GLN ALA ASP VAL ALA LEU ILE ARG TYR VAL ASN SEQRES 21 B 317 PRO ASP THR GLY ARG THR LEU PHE GLU ALA LYS LEU HIS SEQRES 22 B 317 ARG SER GLY PHE ILE THR VAL SER HIS THR GLY ALA TYR SEQRES 23 B 317 PRO LEU VAL VAL PRO PRO ASN GLY HIS PHE ARG PHE ASP SEQRES 24 B 317 SER TRP VAL ASN GLN PHE TYR SER LEU ALA PRO MET GLY SEQRES 25 B 317 THR GLY ASN GLY ARG HET NAG C 1 15 HET GAL C 2 11 HET FUC C 3 10 HET NAG D 1 15 HET GAL D 2 11 HET FUC D 3 10 HET GOL A 601 6 HET GOL B 601 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *659(H2 O) HELIX 1 AA1 THR A 233 LEU A 237 5 5 HELIX 2 AA2 LEU A 279 VAL A 283 5 5 HELIX 3 AA3 SER A 342 GLY A 346 5 5 HELIX 4 AA4 THR A 364 ILE A 367 5 4 HELIX 5 AA5 PRO A 456 ALA A 467 1 12 HELIX 6 AA6 THR B 233 LEU B 237 5 5 HELIX 7 AA7 LEU B 279 VAL B 283 5 5 HELIX 8 AA8 SER B 342 GLY B 346 5 5 HELIX 9 AA9 THR B 364 ILE B 367 5 4 HELIX 10 AB1 PRO B 456 ALA B 467 1 12 SHEET 1 AA1 4 PHE A 450 CYS A 453 0 SHEET 2 AA1 4 GLU A 429 ARG A 437 -1 N SER A 436 O ILE A 451 SHEET 3 AA1 4 GLN A 248 ALA A 252 -1 N TYR A 250 O PHE A 433 SHEET 4 AA1 4 TYR A 507 PRO A 508 -1 O TYR A 507 N THR A 251 SHEET 1 AA2 6 PHE A 450 CYS A 453 0 SHEET 2 AA2 6 GLU A 429 ARG A 437 -1 N SER A 436 O ILE A 451 SHEET 3 AA2 6 PHE A 498 SER A 502 -1 O VAL A 501 N GLN A 430 SHEET 4 AA2 6 ARG A 486 HIS A 494 -1 N HIS A 494 O PHE A 498 SHEET 5 AA2 6 VAL A 474 ASN A 481 -1 N ALA A 475 O LEU A 493 SHEET 6 AA2 6 HIS A 516 VAL A 523 -1 O SER A 521 N LEU A 476 SHEET 1 AA3 7 TYR A 286 ALA A 292 0 SHEET 2 AA3 7 ASN A 301 LEU A 305 -1 O GLN A 304 N ARG A 289 SHEET 3 AA3 7 SER A 369 SER A 374 -1 O LEU A 372 N ASN A 301 SHEET 4 AA3 7 LYS A 352 SER A 357 -1 N TYR A 355 O HIS A 373 SHEET 5 AA3 7 ILE A 331 THR A 337 -1 N LEU A 336 O LYS A 352 SHEET 6 AA3 7 GLN A 384 ALA A 393 -1 O GLY A 391 N TYR A 333 SHEET 7 AA3 7 TYR A 286 ALA A 292 -1 N GLY A 288 O SER A 385 SHEET 1 AA4 4 PHE B 450 CYS B 453 0 SHEET 2 AA4 4 GLU B 429 ARG B 437 -1 N SER B 436 O ILE B 451 SHEET 3 AA4 4 GLN B 248 ALA B 252 -1 N TYR B 250 O PHE B 433 SHEET 4 AA4 4 TYR B 507 PRO B 508 -1 O TYR B 507 N THR B 251 SHEET 1 AA5 6 PHE B 450 CYS B 453 0 SHEET 2 AA5 6 GLU B 429 ARG B 437 -1 N SER B 436 O ILE B 451 SHEET 3 AA5 6 PHE B 498 SER B 502 -1 O VAL B 501 N GLN B 430 SHEET 4 AA5 6 THR B 487 HIS B 494 -1 N HIS B 494 O PHE B 498 SHEET 5 AA5 6 VAL B 474 VAL B 480 -1 N ALA B 475 O LEU B 493 SHEET 6 AA5 6 HIS B 516 VAL B 523 -1 O SER B 521 N LEU B 476 SHEET 1 AA6 7 TYR B 286 ALA B 292 0 SHEET 2 AA6 7 ASN B 301 LEU B 305 -1 O GLN B 304 N ARG B 289 SHEET 3 AA6 7 SER B 369 THR B 376 -1 O LEU B 372 N ASN B 301 SHEET 4 AA6 7 LYS B 352 SER B 357 -1 N GLY B 353 O ILE B 375 SHEET 5 AA6 7 ILE B 331 THR B 337 -1 N LEU B 336 O LYS B 352 SHEET 6 AA6 7 GLN B 384 ALA B 393 -1 O GLY B 391 N TYR B 333 SHEET 7 AA6 7 TYR B 286 ALA B 292 -1 N GLY B 288 O SER B 385 LINK O3 NAG C 1 C1 GAL C 2 1555 1555 1.41 LINK O4 NAG C 1 C1 FUC C 3 1555 1555 1.41 LINK O3 NAG D 1 C1 GAL D 2 1555 1555 1.40 LINK O4 NAG D 1 C1 FUC D 3 1555 1555 1.39 CRYST1 67.230 82.618 116.142 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014874 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012104 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008610 0.00000