HEADER ISOMERASE 13-MAY-18 5ZVU TITLE CRYSTAL STRUCTURE OF K132A MUTANT OF PHOSPHOMANNOSE ISOMERASE FROM TITLE 2 SALMONELLA TYPHIMURIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSE-6-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHOHEXOMUTASE,PHOSPHOMANNOSE ISOMERASE,PMI; COMPND 5 EC: 5.3.1.8; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 STRAIN: LT2 / SGSC1412 / ATCC 700720; SOURCE 6 GENE: MANA, PMI, STM1467; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ISOMERASE, ZINC BINDING, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.BANGERA,M.R.N.MURTHY REVDAT 3 22-NOV-23 5ZVU 1 REMARK REVDAT 2 22-MAY-19 5ZVU 1 JRNL REVDAT 1 01-MAY-19 5ZVU 0 JRNL AUTH M.BANGERA,G.GOWDA K,S.R.SAGURTHI,M.R.N.MURTHY JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO PHOSPHOMANNOSE JRNL TITL 2 ISOMERASE: THE ROLE OF ZINC AND CATALYTIC RESIDUES. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 475 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31063150 JRNL DOI 10.1107/S2059798319004169 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1377 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.81000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : 2.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.329 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.247 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.199 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.538 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.870 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2957 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2834 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4016 ; 1.636 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6503 ; 0.823 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 377 ; 7.233 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;39.416 ;24.839 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 462 ;15.836 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;13.225 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 459 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3376 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 657 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1520 ; 0.731 ; 1.224 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1519 ; 0.729 ; 1.223 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1893 ; 1.264 ; 1.827 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1894 ; 1.264 ; 1.828 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1437 ; 0.845 ; 1.345 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1437 ; 0.845 ; 1.345 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2124 ; 1.410 ; 1.969 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3286 ; 5.145 ;10.456 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3255 ; 5.091 ;10.299 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 391 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2744 9.5304 125.4049 REMARK 3 T TENSOR REMARK 3 T11: 0.1049 T22: 0.0502 REMARK 3 T33: 0.0079 T12: -0.0033 REMARK 3 T13: 0.0043 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 1.1400 L22: 2.1958 REMARK 3 L33: 1.8591 L12: -0.3432 REMARK 3 L13: -0.4530 L23: 0.7908 REMARK 3 S TENSOR REMARK 3 S11: 0.0216 S12: -0.0746 S13: -0.0099 REMARK 3 S21: 0.2205 S22: 0.0086 S23: 0.0777 REMARK 3 S31: -0.0168 S32: 0.0013 S33: -0.0302 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZVU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1300007754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20172 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 37.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13000 REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36100 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3H1M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM ACETATE TETRAHYDRATE, REMARK 280 0.2 M SODIUM CACODYLATE PH 6.8, 20% PEG 8000,25% DIOXANE, REMARK 280 MICROBATCH, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.07000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.84500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.89500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.84500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.07000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.89500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 50 REMARK 465 ALA A 51 REMARK 465 ASN A 52 REMARK 465 GLY A 53 REMARK 465 GLU A 54 REMARK 465 ALA A 115 REMARK 465 GLY A 116 REMARK 465 ILE A 117 REMARK 465 ALA A 121 REMARK 465 ALA A 122 REMARK 465 GLU A 123 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 43 CE NZ REMARK 470 LYS A 64 CD CE NZ REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 LYS A 111 CD CE NZ REMARK 470 ASP A 120 CG OD1 OD2 REMARK 470 ARG A 124 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 ASP A 226 CG OD1 OD2 REMARK 470 LYS A 280 CD CE NZ REMARK 470 LYS A 292 CE NZ REMARK 470 GLU A 294 CG CD OE1 OE2 REMARK 470 GLN A 331 CG CD OE1 NE2 REMARK 470 GLU A 356 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 27 64.26 -154.41 REMARK 500 SER A 44 62.91 -160.37 REMARK 500 ASP A 128 130.55 -175.00 REMARK 500 ALA A 147 157.56 74.23 REMARK 500 PRO A 175 69.15 -69.69 REMARK 500 ASP A 226 43.60 -103.78 REMARK 500 ASP A 355 -120.06 60.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 127 ASP A 128 -145.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 656 DISTANCE = 8.06 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 99 NE2 REMARK 620 2 HIS A 255 NE2 97.1 REMARK 620 3 EDO A 402 O1 140.9 94.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H1M RELATED DB: PDB REMARK 900 NATIVE PROTEIN REMARK 900 RELATED ID: 2WFP RELATED DB: PDB REMARK 900 NATIVE APO PROTEIN DBREF 5ZVU A 1 391 UNP P25081 MANA_SALTY 1 391 SEQADV 5ZVU SER A 0 UNP P25081 EXPRESSION TAG SEQADV 5ZVU ALA A 132 UNP P25081 LYS 132 ENGINEERED MUTATION SEQRES 1 A 392 SER MET GLN LYS LEU ILE ASN SER VAL GLN ASN TYR ALA SEQRES 2 A 392 TRP GLY SER LYS THR ALA LEU THR GLU LEU TYR GLY ILE SEQRES 3 A 392 ALA ASN PRO GLN GLN GLN PRO MET ALA GLU LEU TRP MET SEQRES 4 A 392 GLY ALA HIS PRO LYS SER SER SER ARG ILE THR THR ALA SEQRES 5 A 392 ASN GLY GLU THR VAL SER LEU ARG ASP ALA ILE GLU LYS SEQRES 6 A 392 ASN LYS THR ALA MET LEU GLY GLU ALA VAL ALA ASN ARG SEQRES 7 A 392 PHE GLY GLU LEU PRO PHE LEU PHE LYS VAL LEU CYS ALA SEQRES 8 A 392 ALA GLN PRO LEU SER ILE GLN VAL HIS PRO ASN LYS ARG SEQRES 9 A 392 ASN SER GLU ILE GLY PHE ALA LYS GLU ASN ALA ALA GLY SEQRES 10 A 392 ILE PRO MET ASP ALA ALA GLU ARG ASN TYR LYS ASP PRO SEQRES 11 A 392 ASN HIS ALA PRO GLU LEU VAL PHE ALA LEU THR PRO PHE SEQRES 12 A 392 LEU ALA MET ASN ALA PHE ARG GLU PHE SER ASP ILE VAL SEQRES 13 A 392 SER LEU LEU GLN PRO VAL ALA GLY ALA HIS SER ALA ILE SEQRES 14 A 392 ALA HIS PHE LEU GLN VAL PRO ASN ALA GLU ARG LEU SER SEQRES 15 A 392 GLN LEU PHE ALA SER LEU LEU ASN MET GLN GLY GLU GLU SEQRES 16 A 392 LYS SER ARG ALA LEU ALA VAL LEU LYS ALA ALA LEU ASN SEQRES 17 A 392 SER GLN GLN GLY GLU PRO TRP GLN THR ILE ARG VAL ILE SEQRES 18 A 392 SER GLU TYR TYR PRO ASP ASP SER GLY LEU PHE SER PRO SEQRES 19 A 392 LEU LEU LEU ASN VAL VAL LYS LEU ASN PRO GLY GLU ALA SEQRES 20 A 392 MET PHE LEU PHE ALA GLU THR PRO HIS ALA TYR LEU GLN SEQRES 21 A 392 GLY VAL ALA LEU GLU VAL MET ALA ASN SER ASP ASN VAL SEQRES 22 A 392 LEU ARG ALA GLY LEU THR PRO LYS TYR ILE ASP ILE PRO SEQRES 23 A 392 GLU LEU VAL ALA ASN VAL LYS PHE GLU PRO LYS PRO ALA SEQRES 24 A 392 GLY GLU LEU LEU THR ALA PRO VAL LYS SER GLY ALA GLU SEQRES 25 A 392 LEU ASP PHE PRO ILE PRO VAL ASP ASP PHE ALA PHE SER SEQRES 26 A 392 LEU HIS ASP LEU ALA LEU GLN GLU THR SER ILE GLY GLN SEQRES 27 A 392 HIS SER ALA ALA ILE LEU PHE CYS VAL GLU GLY GLU ALA SEQRES 28 A 392 VAL LEU ARG LYS ASP GLU GLN ARG LEU VAL LEU LYS PRO SEQRES 29 A 392 GLY GLU SER ALA PHE ILE GLY ALA ASP GLU SER PRO VAL SEQRES 30 A 392 ASN ALA SER GLY THR GLY ARG LEU ALA ARG VAL TYR ASN SEQRES 31 A 392 LYS LEU HET ZN A 401 1 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 HOH *156(H2 O) HELIX 1 AA1 THR A 17 GLY A 24 1 8 HELIX 2 AA2 LEU A 58 ASN A 65 1 8 HELIX 3 AA3 ASN A 65 GLY A 71 1 7 HELIX 4 AA4 GLY A 71 PHE A 78 1 8 HELIX 5 AA5 ASN A 101 ALA A 114 1 14 HELIX 6 AA6 GLU A 150 GLN A 159 1 10 HELIX 7 AA7 PRO A 160 ALA A 164 5 5 HELIX 8 AA8 HIS A 165 VAL A 174 1 10 HELIX 9 AA9 ASN A 176 ASN A 189 1 14 HELIX 10 AB1 GLN A 191 LEU A 206 1 16 HELIX 11 AB2 ASN A 207 GLN A 209 5 3 HELIX 12 AB3 PRO A 213 TYR A 224 1 12 HELIX 13 AB4 ASP A 227 LEU A 230 5 4 HELIX 14 AB5 PHE A 231 LEU A 235 1 5 HELIX 15 AB6 ASP A 283 ASN A 290 1 8 HELIX 16 AB7 PRO A 297 LEU A 301 5 5 HELIX 17 AB8 ALA A 371 SER A 374 5 4 SHEET 1 AA1 5 MET A 1 LYS A 3 0 SHEET 2 AA1 5 SER A 366 ILE A 369 -1 O PHE A 368 N GLN A 2 SHEET 3 AA1 5 ALA A 341 LYS A 354 -1 N ALA A 341 O ILE A 369 SHEET 4 AA1 5 VAL A 376 TYR A 388 -1 O SER A 379 N VAL A 351 SHEET 5 AA1 5 THR A 333 ILE A 335 -1 N ILE A 335 O VAL A 376 SHEET 1 AA2 6 VAL A 306 SER A 308 0 SHEET 2 AA2 6 GLU A 311 PHE A 314 -1 O GLU A 311 N SER A 308 SHEET 3 AA2 6 ALA A 322 ASP A 327 -1 O LEU A 325 N LEU A 312 SHEET 4 AA2 6 VAL A 376 TYR A 388 -1 O ARG A 386 N SER A 324 SHEET 5 AA2 6 ALA A 341 LYS A 354 -1 N VAL A 351 O SER A 379 SHEET 6 AA2 6 GLN A 357 LEU A 361 -1 O LEU A 359 N LEU A 352 SHEET 1 AA3 6 SER A 7 GLN A 9 0 SHEET 2 AA3 6 GLU A 35 MET A 38 -1 O TRP A 37 N SER A 7 SHEET 3 AA3 6 PHE A 83 ALA A 90 -1 O PHE A 85 N MET A 38 SHEET 4 AA3 6 HIS A 255 ALA A 267 -1 O ALA A 262 N LEU A 88 SHEET 5 AA3 6 PHE A 142 PHE A 148 -1 N LEU A 143 O GLN A 259 SHEET 6 AA3 6 LEU A 236 LEU A 241 -1 O VAL A 239 N ALA A 144 SHEET 1 AA4 6 SER A 7 GLN A 9 0 SHEET 2 AA4 6 GLU A 35 MET A 38 -1 O TRP A 37 N SER A 7 SHEET 3 AA4 6 PHE A 83 ALA A 90 -1 O PHE A 85 N MET A 38 SHEET 4 AA4 6 HIS A 255 ALA A 267 -1 O ALA A 262 N LEU A 88 SHEET 5 AA4 6 GLU A 134 ALA A 138 -1 N PHE A 137 O LEU A 263 SHEET 6 AA4 6 ALA A 246 LEU A 249 -1 O MET A 247 N VAL A 136 SHEET 1 AA5 2 ARG A 47 ILE A 48 0 SHEET 2 AA5 2 VAL A 56 SER A 57 -1 O VAL A 56 N ILE A 48 SHEET 1 AA6 2 ILE A 96 VAL A 98 0 SHEET 2 AA6 2 LEU A 273 GLY A 276 -1 O ALA A 275 N ILE A 96 LINK NE2 HIS A 99 ZN ZN A 401 1555 1555 2.65 LINK NE2 HIS A 255 ZN ZN A 401 1555 1555 2.24 LINK ZN ZN A 401 O1 EDO A 402 1555 1555 2.55 CISPEP 1 GLU A 212 PRO A 213 0 0.54 CISPEP 2 SER A 374 PRO A 375 0 -3.45 SITE 1 AC1 4 HIS A 99 GLU A 134 HIS A 255 EDO A 402 SITE 1 AC2 7 LEU A 94 SER A 95 GLN A 97 HIS A 255 SITE 2 AC2 7 ALA A 256 TYR A 257 ZN A 401 SITE 1 AC3 5 ASN A 10 GLN A 31 HOH A 562 HOH A 583 SITE 2 AC3 5 HOH A 624 SITE 1 AC4 4 ARG A 149 ASN A 237 VAL A 238 HOH A 520 SITE 1 AC5 2 TYR A 11 TRP A 13 CRYST1 36.140 91.790 111.690 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027670 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010894 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008953 0.00000