HEADER ISOMERASE 21-MAY-18 5ZXM TITLE CRYSTAL STRUCTURE OF GYRASEB N-TERMINAL AT 1.93A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 EC: 5.6.2.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA I; SOURCE 3 ORGANISM_TAXID: 59201; SOURCE 4 GENE: GYRB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28 A (+) KEYWDS TOPOISOMERASE, ATP BINDING DOMAIN, GYRB-NTD, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.TIWARI,D.GUPTA,E.SACHDEVA,S.SHARMA,T.P.SINGH,A.S.ETHAYATHULLA, AUTHOR 2 P.KAUR REVDAT 4 22-NOV-23 5ZXM 1 REMARK REVDAT 3 10-MAR-21 5ZXM 1 JRNL REMARK REVDAT 2 15-JUL-20 5ZXM 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQADV LINK SITE ATOM REVDAT 1 22-MAY-19 5ZXM 0 JRNL AUTH D.GUPTA,P.TIWARI,M.A.HAQUE,E.SACHDEVA,M.I.HASSAN, JRNL AUTH 2 A.S.ETHAYATHULLA,P.KAUR JRNL TITL STRUCTURAL INSIGHTS INTO THE TRANSIENT CLOSED CONFORMATION JRNL TITL 2 AND PH DEPENDENT ATPASE ACTIVITY OF S.TYPHI GYRASEB N- JRNL TITL 3 TERMINAL DOMAIN. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 701 08786 2021 JRNL REFN ESSN 1096-0384 JRNL PMID 33548211 JRNL DOI 10.1016/J.ABB.2021.108786 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 69818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1458 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3436 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 1458 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6032 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.260 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZXM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1300007817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 273 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69892 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.938 REMARK 200 RESOLUTION RANGE LOW (A) : 73.004 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : 0.50000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1EI1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, LITHIUM SULFATE, ATP, TRIS, REMARK 280 PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.26500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.99500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.26500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.99500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 394 REMARK 465 HIS A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 ARG B 394 REMARK 465 HIS B 395 REMARK 465 HIS B 396 REMARK 465 HIS B 397 REMARK 465 HIS B 398 REMARK 465 HIS B 399 REMARK 465 HIS B 400 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 115 -57.16 66.41 REMARK 500 ASN A 178 -89.22 71.92 REMARK 500 HIS A 217 44.85 -152.65 REMARK 500 ASN A 272 -1.00 72.09 REMARK 500 LEU B 115 -58.74 66.50 REMARK 500 ASN B 178 -64.06 73.06 REMARK 500 HIS B 217 45.79 -154.48 REMARK 500 SER B 309 70.95 56.60 REMARK 500 THR B 392 -17.29 -35.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG B 206 -11.24 REMARK 500 ARG B 206 -11.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 867 DISTANCE = 6.39 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 505 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 46 OD1 REMARK 620 2 ADP A 501 O2B 101.5 REMARK 620 3 ADP A 501 O2A 115.0 97.8 REMARK 620 4 HOH A 605 O 80.8 152.5 106.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 505 DBREF1 5ZXM A 1 394 UNP A0A3R0U328_SALET DBREF2 5ZXM A A0A3R0U328 1 394 DBREF1 5ZXM B 1 394 UNP A0A3R0U328_SALET DBREF2 5ZXM B A0A3R0U328 1 394 SEQADV 5ZXM ALA A 40 UNP A0A3R0U32 VAL 40 ENGINEERED MUTATION SEQADV 5ZXM SER A 85 UNP A0A3R0U32 GLU 85 ENGINEERED MUTATION SEQADV 5ZXM LYS A 173 UNP A0A3R0U32 HIS 173 ENGINEERED MUTATION SEQADV 5ZXM SER A 174 UNP A0A3R0U32 GLU 174 ENGINEERED MUTATION SEQADV 5ZXM HIS A 395 UNP A0A3R0U32 EXPRESSION TAG SEQADV 5ZXM HIS A 396 UNP A0A3R0U32 EXPRESSION TAG SEQADV 5ZXM HIS A 397 UNP A0A3R0U32 EXPRESSION TAG SEQADV 5ZXM HIS A 398 UNP A0A3R0U32 EXPRESSION TAG SEQADV 5ZXM HIS A 399 UNP A0A3R0U32 EXPRESSION TAG SEQADV 5ZXM HIS A 400 UNP A0A3R0U32 EXPRESSION TAG SEQADV 5ZXM ALA B 40 UNP A0A3R0U32 VAL 40 ENGINEERED MUTATION SEQADV 5ZXM SER B 85 UNP A0A3R0U32 GLU 85 ENGINEERED MUTATION SEQADV 5ZXM LYS B 173 UNP A0A3R0U32 HIS 173 ENGINEERED MUTATION SEQADV 5ZXM SER B 174 UNP A0A3R0U32 GLU 174 ENGINEERED MUTATION SEQADV 5ZXM HIS B 395 UNP A0A3R0U32 EXPRESSION TAG SEQADV 5ZXM HIS B 396 UNP A0A3R0U32 EXPRESSION TAG SEQADV 5ZXM HIS B 397 UNP A0A3R0U32 EXPRESSION TAG SEQADV 5ZXM HIS B 398 UNP A0A3R0U32 EXPRESSION TAG SEQADV 5ZXM HIS B 399 UNP A0A3R0U32 EXPRESSION TAG SEQADV 5ZXM HIS B 400 UNP A0A3R0U32 EXPRESSION TAG SEQRES 1 A 400 MET SER ASN SER TYR ASP SER SER SER ILE LYS VAL LEU SEQRES 2 A 400 LYS GLY LEU ASP ALA VAL ARG LYS ARG PRO GLY MET TYR SEQRES 3 A 400 ILE GLY ASP THR ASP ASP GLY THR GLY LEU HIS HIS MET SEQRES 4 A 400 ALA PHE GLU VAL VAL ASP ASN ALA ILE ASP GLU ALA LEU SEQRES 5 A 400 ALA GLY HIS CYS LYS ASP ILE VAL VAL THR ILE HIS ALA SEQRES 6 A 400 ASP ASN SER VAL SER VAL THR ASP ASP GLY ARG GLY ILE SEQRES 7 A 400 PRO THR GLY ILE HIS PRO SER GLU GLY VAL SER ALA ALA SEQRES 8 A 400 GLU VAL ILE MET THR VAL LEU HIS ALA GLY GLY LYS PHE SEQRES 9 A 400 ASP ASP ASN SER TYR LYS VAL SER GLY GLY LEU HIS GLY SEQRES 10 A 400 VAL GLY VAL SER VAL VAL ASN ALA LEU SER GLN LYS LEU SEQRES 11 A 400 GLU LEU VAL ILE GLN ARG ASP GLY LYS ILE HIS ARG GLN SEQRES 12 A 400 ILE TYR GLU HIS GLY VAL PRO GLN ALA PRO LEU ALA VAL SEQRES 13 A 400 THR GLY ASP THR ASP LYS THR GLY THR MET VAL ARG PHE SEQRES 14 A 400 TRP PRO SER LYS SER THR PHE THR ASN VAL THR GLU PHE SEQRES 15 A 400 GLU TYR GLU ILE LEU ALA LYS ARG LEU ARG GLU LEU SER SEQRES 16 A 400 PHE LEU ASN SER GLY VAL SER ILE ARG LEU ARG ASP LYS SEQRES 17 A 400 ARG ASP GLY LYS GLU ASP HIS PHE HIS TYR GLU GLY GLY SEQRES 18 A 400 ILE LYS ALA PHE VAL GLU TYR LEU ASN LYS ASN LYS THR SEQRES 19 A 400 PRO ILE HIS PRO ASN ILE PHE TYR PHE SER THR GLU LYS SEQRES 20 A 400 ASP GLY ILE GLY VAL GLU VAL ALA LEU GLN TRP ASN ASP SEQRES 21 A 400 GLY PHE GLN GLU ASN ILE TYR CYS PHE THR ASN ASN ILE SEQRES 22 A 400 PRO GLN ARG ASP GLY GLY THR HIS LEU ALA GLY PHE ARG SEQRES 23 A 400 ALA ALA MET THR ARG THR LEU ASN ALA TYR MET ASP LYS SEQRES 24 A 400 GLU GLY TYR SER LYS LYS ALA LYS VAL SER ALA THR GLY SEQRES 25 A 400 ASP ASP ALA ARG GLU GLY LEU ILE ALA VAL VAL SER VAL SEQRES 26 A 400 LYS VAL PRO ASP PRO LYS PHE SER SER GLN THR LYS ASP SEQRES 27 A 400 LYS LEU VAL SER SER GLU VAL LYS SER ALA VAL GLU GLN SEQRES 28 A 400 GLN MET ASN GLU LEU LEU SER GLU TYR LEU LEU GLU ASN SEQRES 29 A 400 PRO SER ASP ALA LYS ILE VAL VAL GLY LYS ILE ILE ASP SEQRES 30 A 400 ALA ALA ARG ALA ARG GLU ALA ALA ARG ARG ALA ARG GLU SEQRES 31 A 400 MET THR ARG ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 400 MET SER ASN SER TYR ASP SER SER SER ILE LYS VAL LEU SEQRES 2 B 400 LYS GLY LEU ASP ALA VAL ARG LYS ARG PRO GLY MET TYR SEQRES 3 B 400 ILE GLY ASP THR ASP ASP GLY THR GLY LEU HIS HIS MET SEQRES 4 B 400 ALA PHE GLU VAL VAL ASP ASN ALA ILE ASP GLU ALA LEU SEQRES 5 B 400 ALA GLY HIS CYS LYS ASP ILE VAL VAL THR ILE HIS ALA SEQRES 6 B 400 ASP ASN SER VAL SER VAL THR ASP ASP GLY ARG GLY ILE SEQRES 7 B 400 PRO THR GLY ILE HIS PRO SER GLU GLY VAL SER ALA ALA SEQRES 8 B 400 GLU VAL ILE MET THR VAL LEU HIS ALA GLY GLY LYS PHE SEQRES 9 B 400 ASP ASP ASN SER TYR LYS VAL SER GLY GLY LEU HIS GLY SEQRES 10 B 400 VAL GLY VAL SER VAL VAL ASN ALA LEU SER GLN LYS LEU SEQRES 11 B 400 GLU LEU VAL ILE GLN ARG ASP GLY LYS ILE HIS ARG GLN SEQRES 12 B 400 ILE TYR GLU HIS GLY VAL PRO GLN ALA PRO LEU ALA VAL SEQRES 13 B 400 THR GLY ASP THR ASP LYS THR GLY THR MET VAL ARG PHE SEQRES 14 B 400 TRP PRO SER LYS SER THR PHE THR ASN VAL THR GLU PHE SEQRES 15 B 400 GLU TYR GLU ILE LEU ALA LYS ARG LEU ARG GLU LEU SER SEQRES 16 B 400 PHE LEU ASN SER GLY VAL SER ILE ARG LEU ARG ASP LYS SEQRES 17 B 400 ARG ASP GLY LYS GLU ASP HIS PHE HIS TYR GLU GLY GLY SEQRES 18 B 400 ILE LYS ALA PHE VAL GLU TYR LEU ASN LYS ASN LYS THR SEQRES 19 B 400 PRO ILE HIS PRO ASN ILE PHE TYR PHE SER THR GLU LYS SEQRES 20 B 400 ASP GLY ILE GLY VAL GLU VAL ALA LEU GLN TRP ASN ASP SEQRES 21 B 400 GLY PHE GLN GLU ASN ILE TYR CYS PHE THR ASN ASN ILE SEQRES 22 B 400 PRO GLN ARG ASP GLY GLY THR HIS LEU ALA GLY PHE ARG SEQRES 23 B 400 ALA ALA MET THR ARG THR LEU ASN ALA TYR MET ASP LYS SEQRES 24 B 400 GLU GLY TYR SER LYS LYS ALA LYS VAL SER ALA THR GLY SEQRES 25 B 400 ASP ASP ALA ARG GLU GLY LEU ILE ALA VAL VAL SER VAL SEQRES 26 B 400 LYS VAL PRO ASP PRO LYS PHE SER SER GLN THR LYS ASP SEQRES 27 B 400 LYS LEU VAL SER SER GLU VAL LYS SER ALA VAL GLU GLN SEQRES 28 B 400 GLN MET ASN GLU LEU LEU SER GLU TYR LEU LEU GLU ASN SEQRES 29 B 400 PRO SER ASP ALA LYS ILE VAL VAL GLY LYS ILE ILE ASP SEQRES 30 B 400 ALA ALA ARG ALA ARG GLU ALA ALA ARG ARG ALA ARG GLU SEQRES 31 B 400 MET THR ARG ARG HIS HIS HIS HIS HIS HIS HET ADP A 501 27 HET SO4 A 502 5 HET PEG A 503 7 HET PEG A 504 7 HET MG A 505 1 HET ADP B 501 27 HET SO4 B 502 5 HET PEG B 503 7 HET GOL B 504 6 HET GOL B 505 6 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 PEG 3(C4 H10 O3) FORMUL 7 MG MG 2+ FORMUL 11 GOL 2(C3 H8 O3) FORMUL 13 HOH *560(H2 O) HELIX 1 AA1 ASP A 6 ILE A 10 5 5 HELIX 2 AA2 LEU A 16 ARG A 22 1 7 HELIX 3 AA3 ARG A 22 GLY A 28 1 7 HELIX 4 AA4 GLY A 33 ALA A 53 1 21 HELIX 5 AA5 SER A 89 VAL A 97 1 9 HELIX 6 AA6 VAL A 118 LEU A 126 1 9 HELIX 7 AA7 GLU A 183 ASN A 198 1 16 HELIX 8 AA8 GLY A 220 ASN A 230 1 11 HELIX 9 AA9 GLY A 279 GLU A 300 1 22 HELIX 10 AB1 SER A 303 ALA A 310 1 8 HELIX 11 AB2 SER A 342 ASN A 364 1 23 HELIX 12 AB3 ASN A 364 THR A 392 1 29 HELIX 13 AB4 ASP B 6 ILE B 10 5 5 HELIX 14 AB5 GLY B 15 ARG B 22 1 8 HELIX 15 AB6 PRO B 23 GLY B 28 1 6 HELIX 16 AB7 GLY B 33 ALA B 53 1 21 HELIX 17 AB8 SER B 89 VAL B 97 1 9 HELIX 18 AB9 VAL B 118 LEU B 126 1 9 HELIX 19 AC1 GLU B 183 ASN B 198 1 16 HELIX 20 AC2 GLY B 220 LYS B 231 1 12 HELIX 21 AC3 GLY B 279 GLU B 300 1 22 HELIX 22 AC4 GLY B 301 LYS B 307 1 7 HELIX 23 AC5 THR B 311 GLU B 317 1 7 HELIX 24 AC6 SER B 342 ASN B 364 1 23 HELIX 25 AC7 ASN B 364 ARG B 393 1 30 SHEET 1 AA1 2 LYS A 11 VAL A 12 0 SHEET 2 AA1 2 ALA B 100 GLY B 101 -1 O GLY B 101 N LYS A 11 SHEET 1 AA2 3 VAL A 149 PRO A 150 0 SHEET 2 AA2 3 LYS A 139 GLU A 146 -1 N GLU A 146 O VAL A 149 SHEET 3 AA2 3 ALA A 155 ASP A 159 -1 O THR A 157 N ILE A 140 SHEET 1 AA3 8 VAL A 149 PRO A 150 0 SHEET 2 AA3 8 LYS A 139 GLU A 146 -1 N GLU A 146 O VAL A 149 SHEET 3 AA3 8 SER A 127 ARG A 136 -1 N ILE A 134 O HIS A 141 SHEET 4 AA3 8 GLY A 164 PRO A 171 -1 O ARG A 168 N GLU A 131 SHEET 5 AA3 8 VAL A 69 ASP A 73 -1 N VAL A 69 O PHE A 169 SHEET 6 AA3 8 ASP A 58 ILE A 63 -1 N THR A 62 O SER A 70 SHEET 7 AA3 8 SER A 202 ASP A 207 1 O ARG A 206 N ILE A 63 SHEET 8 AA3 8 GLU A 213 PHE A 216 -1 O PHE A 216 N ILE A 203 SHEET 1 AA4 2 ALA A 100 GLY A 101 0 SHEET 2 AA4 2 LYS B 11 VAL B 12 -1 O LYS B 11 N GLY A 101 SHEET 1 AA5 5 PHE A 241 LYS A 247 0 SHEET 2 AA5 5 ILE A 250 TRP A 258 -1 O VAL A 252 N THR A 245 SHEET 3 AA5 5 LEU A 319 LYS A 326 -1 O SER A 324 N GLU A 253 SHEET 4 AA5 5 ASN A 265 THR A 270 1 N ASN A 265 O LEU A 319 SHEET 5 AA5 5 ILE A 273 PRO A 274 -1 O ILE A 273 N THR A 270 SHEET 1 AA6 3 VAL B 149 PRO B 150 0 SHEET 2 AA6 3 LYS B 139 GLU B 146 -1 N GLU B 146 O VAL B 149 SHEET 3 AA6 3 ALA B 155 ASP B 159 -1 O THR B 157 N ILE B 140 SHEET 1 AA7 8 VAL B 149 PRO B 150 0 SHEET 2 AA7 8 LYS B 139 GLU B 146 -1 N GLU B 146 O VAL B 149 SHEET 3 AA7 8 SER B 127 ARG B 136 -1 N LEU B 132 O GLN B 143 SHEET 4 AA7 8 GLY B 164 PRO B 171 -1 O ARG B 168 N GLU B 131 SHEET 5 AA7 8 VAL B 69 ASP B 73 -1 N ASP B 73 O THR B 165 SHEET 6 AA7 8 ASP B 58 ILE B 63 -1 N THR B 62 O SER B 70 SHEET 7 AA7 8 SER B 202 ASP B 207 1 O ARG B 204 N VAL B 61 SHEET 8 AA7 8 GLU B 213 PHE B 216 -1 O PHE B 216 N ILE B 203 SHEET 1 AA8 5 PHE B 241 LYS B 247 0 SHEET 2 AA8 5 ILE B 250 TRP B 258 -1 O VAL B 252 N THR B 245 SHEET 3 AA8 5 LEU B 319 LYS B 326 -1 O SER B 324 N GLU B 253 SHEET 4 AA8 5 ASN B 265 THR B 270 1 N TYR B 267 O ALA B 321 SHEET 5 AA8 5 ILE B 273 PRO B 274 -1 O ILE B 273 N THR B 270 LINK OD1 ASN A 46 MG MG A 505 1555 1555 2.17 LINK O2B ADP A 501 MG MG A 505 1555 1555 2.05 LINK O2A ADP A 501 MG MG A 505 1555 1555 1.89 LINK MG MG A 505 O HOH A 605 1555 1555 2.84 SITE 1 AC1 27 ASN A 46 GLU A 50 ASP A 73 ILE A 78 SITE 2 AC1 27 ILE A 94 ALA A 100 GLY A 101 GLY A 102 SITE 3 AC1 27 LYS A 103 TYR A 109 GLY A 114 LEU A 115 SITE 4 AC1 27 HIS A 116 GLY A 117 VAL A 118 GLY A 119 SITE 5 AC1 27 VAL A 120 THR A 165 MG A 505 HOH A 606 SITE 6 AC1 27 HOH A 627 HOH A 653 HOH A 658 HOH A 672 SITE 7 AC1 27 HOH A 673 TYR B 5 ILE B 10 SITE 1 AC2 7 PRO A 79 THR A 80 GLY A 81 ARG A 136 SITE 2 AC2 7 HOH A 641 ASP B 6 SER B 7 SITE 1 AC3 5 LEU A 13 ASP A 17 ARG A 20 LYS A 21 SITE 2 AC3 5 HOH A 697 SITE 1 AC4 4 ARG A 20 HIS A 147 VAL A 149 HOH A 830 SITE 1 AC5 3 ASN A 46 ADP A 501 HOH A 605 SITE 1 AC6 25 TYR A 5 ILE A 10 ASN B 46 GLU B 50 SITE 2 AC6 25 ASP B 73 ILE B 78 ILE B 94 ALA B 100 SITE 3 AC6 25 GLY B 101 GLY B 102 LYS B 103 TYR B 109 SITE 4 AC6 25 GLY B 114 LEU B 115 HIS B 116 GLY B 117 SITE 5 AC6 25 VAL B 118 GLY B 119 VAL B 120 THR B 165 SITE 6 AC6 25 HOH B 633 HOH B 651 HOH B 674 HOH B 725 SITE 7 AC6 25 HOH B 735 SITE 1 AC7 7 ASP A 6 SER A 7 PRO B 79 THR B 80 SITE 2 AC7 7 GLY B 81 ARG B 136 HOH B 604 SITE 1 AC8 3 PRO B 235 ILE B 236 HIS B 237 SITE 1 AC9 5 ASP B 17 ARG B 20 LYS B 21 HOH B 610 SITE 2 AC9 5 HOH B 621 SITE 1 AD1 6 THR B 290 GLY B 312 ASP B 313 ARG B 316 SITE 2 AD1 6 HOH B 654 HOH B 721 CRYST1 79.420 86.530 135.990 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012591 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011557 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007353 0.00000