HEADER TRANSCRIPTION 28-MAY-18 5ZYP TITLE STRUCTURE OF THE YEAST CTR9/PAF1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE-ASSOCIATED PROTEIN CTR9,RNA POLYMERASE II- COMPND 3 ASSOCIATED PROTEIN 1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: CENTROMERE-BINDING FACTOR 1-DEPENDENT PROTEIN 1,CLN THREE- COMPND 6 REQUIRING PROTEIN 9,PROTEIN PAF1; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: FUSION PROTEIN OF RESIDUES 1-313 FROM CTR9 (UNP COMPND 9 P89105) AND RESIDUES FROM 34-103 FROM PAF1 (RNA POLYMERASE II- COMPND 10 ASSOCIATED PROTEIN 1, UNP P38351) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: CTR9, CDP1, YOL145C, PAF1, YBR279W, YBR2016; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRANSCIPTION, COMPLEX, TPR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.XIE,M.ZHENG,H.ZHOU,J.LONG REVDAT 2 22-MAY-19 5ZYP 1 JRNL REVDAT 1 26-SEP-18 5ZYP 0 JRNL AUTH Y.XIE,M.ZHENG,X.CHU,Y.CHEN,H.XU,J.WANG,H.ZHOU,J.LONG JRNL TITL PAF1 AND CTR9 SUBCOMPLEX FORMATION IS ESSENTIAL FOR PAF1 JRNL TITL 2 COMPLEX ASSEMBLY AND FUNCTIONAL REGULATION. JRNL REF NAT COMMUN V. 9 3795 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30228257 JRNL DOI 10.1038/S41467-018-06237-7 REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155_000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 35677 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3579 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9851 - 7.4924 0.97 1316 158 0.1969 0.2427 REMARK 3 2 7.4924 - 5.9505 0.99 1357 145 0.2261 0.2075 REMARK 3 3 5.9505 - 5.1994 0.99 1355 152 0.1869 0.2122 REMARK 3 4 5.1994 - 4.7244 1.00 1358 162 0.1718 0.1992 REMARK 3 5 4.7244 - 4.3861 0.99 1361 154 0.1344 0.1875 REMARK 3 6 4.3861 - 4.1276 1.00 1368 154 0.1449 0.1921 REMARK 3 7 4.1276 - 3.9210 1.00 1384 152 0.1532 0.2124 REMARK 3 8 3.9210 - 3.7504 1.00 1388 143 0.1678 0.2240 REMARK 3 9 3.7504 - 3.6061 1.00 1347 150 0.1679 0.2974 REMARK 3 10 3.6061 - 3.4817 1.00 1387 145 0.1956 0.2697 REMARK 3 11 3.4817 - 3.3728 0.99 1386 152 0.2024 0.2476 REMARK 3 12 3.3728 - 3.2764 0.99 1345 146 0.2148 0.2385 REMARK 3 13 3.2764 - 3.1902 0.99 1350 162 0.2269 0.2740 REMARK 3 14 3.1902 - 3.1124 0.99 1353 153 0.2137 0.2664 REMARK 3 15 3.1124 - 3.0416 0.99 1386 158 0.2341 0.3206 REMARK 3 16 3.0416 - 2.9769 1.00 1350 154 0.2259 0.2465 REMARK 3 17 2.9769 - 2.9174 1.00 1368 155 0.2375 0.2980 REMARK 3 18 2.9174 - 2.8623 1.00 1379 141 0.2217 0.2744 REMARK 3 19 2.8623 - 2.8112 0.96 1292 149 0.2300 0.3026 REMARK 3 20 2.8112 - 2.7636 0.95 1293 141 0.2220 0.2993 REMARK 3 21 2.7636 - 2.7190 0.88 1230 136 0.2272 0.2718 REMARK 3 22 2.7190 - 2.6772 0.77 1044 116 0.2386 0.2361 REMARK 3 23 2.6772 - 2.6378 0.70 958 109 0.2280 0.3024 REMARK 3 24 2.6378 - 2.6006 0.61 828 84 0.2295 0.3219 REMARK 3 25 2.6006 - 2.5655 0.41 560 68 0.2473 0.2544 REMARK 3 26 2.5655 - 2.5322 0.26 355 40 0.2463 0.3374 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2791 REMARK 3 ANGLE : 0.984 3780 REMARK 3 CHIRALITY : 0.049 436 REMARK 3 PLANARITY : 0.006 478 REMARK 3 DIHEDRAL : 18.857 1699 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 2.4985 38.1651 50.3240 REMARK 3 T TENSOR REMARK 3 T11: 0.2769 T22: 0.0226 REMARK 3 T33: 0.1803 T12: -0.0766 REMARK 3 T13: -0.0145 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.6863 L22: 1.8659 REMARK 3 L33: 1.6300 L12: -0.0878 REMARK 3 L13: 0.4449 L23: -0.3388 REMARK 3 S TENSOR REMARK 3 S11: -0.4148 S12: 0.3883 S13: 0.2814 REMARK 3 S21: 0.2027 S22: 0.3425 S23: 0.6235 REMARK 3 S31: -0.3942 S32: 0.2246 S33: 0.0022 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZYP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1300007875. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 V714 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 V714 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35677 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX (1.10_2155_000) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, PH8.5, 0.8M LITHIUM REMARK 280 SULFATE, 0.01M NICKEL CHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.99867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.49933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.49933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 76.99867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI A 802 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 ALA A 4 REMARK 465 MSE A 5 REMARK 465 LYS A 6 REMARK 465 VAL A 7 REMARK 465 GLU A 8 REMARK 465 GLY A 9 REMARK 465 GLU A 265 REMARK 465 SER A 266 REMARK 465 PHE A 267 REMARK 465 THR A 268 REMARK 465 ASN A 269 REMARK 465 SER A 270 REMARK 465 THR A 271 REMARK 465 ASN A 272 REMARK 465 ASP A 273 REMARK 465 LYS A 274 REMARK 465 THR A 275 REMARK 465 PHE A 276 REMARK 465 LYS A 277 REMARK 465 GLU A 278 REMARK 465 ALA A 279 REMARK 465 PHE A 280 REMARK 465 THR A 281 REMARK 465 LYS A 282 REMARK 465 HIS A 296 REMARK 465 ASN A 297 REMARK 465 PRO A 298 REMARK 465 TYR A 309 REMARK 465 PHE A 310 REMARK 465 LYS A 311 REMARK 465 GLY A 312 REMARK 465 ASP A 313 REMARK 465 GLU A 1027 REMARK 465 ASN A 1028 REMARK 465 LEU A 1029 REMARK 465 TYR A 1030 REMARK 465 PHE A 1031 REMARK 465 GLN A 1032 REMARK 465 SER A 1033 REMARK 465 GLU A 1034 REMARK 465 THR A 1035 REMARK 465 ASN A 1036 REMARK 465 ALA A 1037 REMARK 465 ASP A 1038 REMARK 465 SER A 1039 REMARK 465 SER A 1040 REMARK 465 ARG A 1103 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 172 NH1 ARG A 177 2.04 REMARK 500 O HOH A 945 O HOH A 985 2.09 REMARK 500 O SER A 285 ND2 ASN A 289 2.11 REMARK 500 ND2 ASN A 198 O HOH A 901 2.18 REMARK 500 OH TYR A 1084 O HOH A 902 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 11 170.90 -59.30 REMARK 500 MSE A 13 55.11 -119.89 REMARK 500 SER A 26 -147.30 -86.34 REMARK 500 HIS A 69 54.99 -114.69 REMARK 500 ASN A 88 -118.74 60.67 REMARK 500 ASP A 134 72.02 -154.32 REMARK 500 ASN A 213 81.20 -157.04 REMARK 500 ASN A 248 83.02 -167.75 REMARK 500 PHE A 263 43.23 -87.95 REMARK 500 SER A 285 7.10 -68.73 REMARK 500 LEU A 301 -72.05 -62.82 REMARK 500 LYS A1090 43.43 -79.86 REMARK 500 LEU A1091 104.38 -57.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 803 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 102 NE2 REMARK 620 2 HOH A 978 O 94.5 REMARK 620 3 HIS A 118 NE2 130.1 88.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 801 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 169 NE2 REMARK 620 2 HIS A 173 NE2 106.4 REMARK 620 3 HOH A 954 O 100.8 75.9 REMARK 620 4 HOH A 964 O 78.8 92.6 167.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 803 DBREF 5ZYP A 1 313 UNP P89105 CTR9_YEAST 1 313 DBREF 5ZYP A 1034 1103 UNP P38351 PAF1_YEAST 34 103 SEQADV 5ZYP GLU A 1027 UNP P89105 LINKER SEQADV 5ZYP ASN A 1028 UNP P89105 LINKER SEQADV 5ZYP LEU A 1029 UNP P89105 LINKER SEQADV 5ZYP TYR A 1030 UNP P89105 LINKER SEQADV 5ZYP PHE A 1031 UNP P89105 LINKER SEQADV 5ZYP GLN A 1032 UNP P89105 LINKER SEQADV 5ZYP SER A 1033 UNP P89105 LINKER SEQRES 1 A 390 MSE THR ASN ALA MSE LYS VAL GLU GLY TYR PRO SER MSE SEQRES 2 A 390 GLU TRP PRO THR SER LEU ASP ILE PRO LEU LYS ALA SER SEQRES 3 A 390 GLU GLU LEU VAL GLY ILE ASP LEU GLU THR ASP LEU PRO SEQRES 4 A 390 ASP ASP PRO THR ASP LEU LYS THR LEU LEU VAL GLU GLU SEQRES 5 A 390 ASN SER GLU LYS GLU HIS TRP LEU THR ILE ALA LEU ALA SEQRES 6 A 390 TYR CYS ASN HIS GLY LYS THR ASN GLU GLY ILE LYS LEU SEQRES 7 A 390 ILE GLU MSE ALA LEU ASP VAL PHE GLN ASN SER GLU ARG SEQRES 8 A 390 ALA SER LEU HIS THR PHE LEU THR TRP ALA HIS LEU ASN SEQRES 9 A 390 LEU ALA LYS GLY GLN SER LEU SER VAL GLU THR LYS GLU SEQRES 10 A 390 HIS GLU LEU THR GLN ALA GLU LEU ASN LEU LYS ASP ALA SEQRES 11 A 390 ILE GLY PHE ASP PRO THR TRP ILE GLY ASN MSE LEU ALA SEQRES 12 A 390 THR VAL GLU LEU TYR TYR GLN ARG GLY HIS TYR ASP LYS SEQRES 13 A 390 ALA LEU GLU THR SER ASP LEU PHE VAL LYS SER ILE HIS SEQRES 14 A 390 ALA GLU ASP HIS ARG SER GLY ARG GLN SER LYS PRO ASN SEQRES 15 A 390 CYS LEU PHE LEU LEU LEU ARG ALA LYS LEU LEU TYR GLN SEQRES 16 A 390 LYS LYS ASN TYR MSE ALA SER LEU LYS ILE PHE GLN GLU SEQRES 17 A 390 LEU LEU VAL ILE ASN PRO VAL LEU GLN PRO ASP PRO ARG SEQRES 18 A 390 ILE GLY ILE GLY LEU CYS PHE TRP GLN LEU LYS ASP SER SEQRES 19 A 390 LYS MSE ALA ILE LYS SER TRP GLN ARG ALA LEU GLN LEU SEQRES 20 A 390 ASN PRO LYS ASN THR SER ALA SER ILE LEU VAL LEU LEU SEQRES 21 A 390 GLY GLU PHE ARG GLU SER PHE THR ASN SER THR ASN ASP SEQRES 22 A 390 LYS THR PHE LYS GLU ALA PHE THR LYS ALA LEU SER ASP SEQRES 23 A 390 LEU ASN ASN ILE PHE SER GLU ASN GLN HIS ASN PRO VAL SEQRES 24 A 390 LEU LEU THR LEU LEU GLN THR TYR TYR TYR PHE LYS GLY SEQRES 25 A 390 ASP GLU ASN LEU TYR PHE GLN SER GLU THR ASN ALA ASP SEQRES 26 A 390 SER SER GLN LEU ILE ASN SER LEU TYR ILE LYS THR ASN SEQRES 27 A 390 VAL THR ASN LEU ILE GLN GLN ASP GLU ASP LEU GLY MSE SEQRES 28 A 390 PRO VAL ASP LEU MSE LYS PHE PRO GLY LEU LEU ASN LYS SEQRES 29 A 390 LEU ASP SER LYS LEU LEU TYR GLY PHE ASP ASN VAL LYS SEQRES 30 A 390 LEU ASP LYS ASP ASP ARG ILE LEU LEU ARG ASP PRO ARG MODRES 5ZYP MSE A 13 MET MODIFIED RESIDUE MODRES 5ZYP MSE A 81 MET MODIFIED RESIDUE MODRES 5ZYP MSE A 141 MET MODIFIED RESIDUE MODRES 5ZYP MSE A 200 MET MODIFIED RESIDUE MODRES 5ZYP MSE A 236 MET MODIFIED RESIDUE MODRES 5ZYP MSE A 1064 MET MODIFIED RESIDUE MODRES 5ZYP MSE A 1069 MET MODIFIED RESIDUE HET MSE A 13 8 HET MSE A 81 8 HET MSE A 141 8 HET MSE A 200 8 HET MSE A 236 8 HET MSE A1064 8 HET MSE A1069 8 HET NI A 801 1 HET NI A 802 1 HET NI A 803 1 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 NI 3(NI 2+) FORMUL 5 HOH *85(H2 O) HELIX 1 AA1 PRO A 42 GLU A 52 1 11 HELIX 2 AA2 GLU A 55 HIS A 69 1 15 HELIX 3 AA3 LYS A 71 LEU A 83 1 13 HELIX 4 AA4 GLN A 87 GLU A 90 5 4 HELIX 5 AA5 ARG A 91 LYS A 107 1 17 HELIX 6 AA6 SER A 112 ASP A 134 1 23 HELIX 7 AA7 TRP A 137 ARG A 151 1 15 HELIX 8 AA8 HIS A 153 SER A 175 1 23 HELIX 9 AA9 ASN A 182 LYS A 196 1 15 HELIX 10 AB1 ASN A 198 ASN A 213 1 16 HELIX 11 AB2 ASP A 219 LEU A 231 1 13 HELIX 12 AB3 ASP A 233 ASN A 248 1 16 HELIX 13 AB4 ASN A 251 PHE A 263 1 13 HELIX 14 AB5 LEU A 284 ASN A 288 1 5 HELIX 15 AB6 ILE A 290 GLN A 295 1 6 HELIX 16 AB7 LEU A 300 THR A 306 1 7 HELIX 17 AB8 LEU A 1042 GLN A 1057 1 16 HELIX 18 AB9 ASP A 1067 PHE A 1071 5 5 HELIX 19 AC1 GLY A 1073 LEU A 1078 1 6 HELIX 20 AC2 SER A 1080 GLY A 1085 5 6 HELIX 21 AC3 ASP A 1092 ILE A 1097 1 6 HELIX 22 AC4 LEU A 1098 ARG A 1100 5 3 SHEET 1 AA1 2 SER A 18 PRO A 22 0 SHEET 2 AA1 2 LEU A 29 ASP A 33 -1 O VAL A 30 N ILE A 21 LINK C SER A 12 N MSE A 13 1555 1555 1.33 LINK C MSE A 13 N GLU A 14 1555 1555 1.32 LINK C GLU A 80 N MSE A 81 1555 1555 1.33 LINK C MSE A 81 N ALA A 82 1555 1555 1.33 LINK NE2 HIS A 102 NI NI A 803 1555 1555 2.25 LINK C ASN A 140 N MSE A 141 1555 1555 1.32 LINK C MSE A 141 N LEU A 142 1555 1555 1.34 LINK NE2 HIS A 169 NI NI A 801 1555 1555 1.99 LINK NE2 HIS A 173 NI NI A 801 1555 1555 2.49 LINK C TYR A 199 N MSE A 200 1555 1555 1.32 LINK C MSE A 200 N ALA A 201 1555 1555 1.34 LINK C LYS A 235 N MSE A 236 1555 1555 1.33 LINK C MSE A 236 N ALA A 237 1555 1555 1.34 LINK C GLY A1063 N MSE A1064 1555 1555 1.33 LINK C MSE A1064 N PRO A1065 1555 1555 1.33 LINK C LEU A1068 N MSE A1069 1555 1555 1.33 LINK C MSE A1069 N LYS A1070 1555 1555 1.33 LINK NI NI A 801 O HOH A 954 1555 1555 2.21 LINK NI NI A 801 O HOH A 964 1555 1555 2.74 LINK NI NI A 803 O HOH A 978 1555 1555 2.52 LINK NE2 HIS A 118 NI NI A 803 1555 4556 2.12 CISPEP 1 GLN A 217 PRO A 218 0 -2.03 SITE 1 AC1 4 HIS A 169 HIS A 173 HOH A 954 HOH A 964 SITE 1 AC2 3 HIS A 118 GLU A 119 NI A 803 SITE 1 AC3 5 HIS A 102 HIS A 118 GLU A 119 NI A 802 SITE 2 AC3 5 HOH A 978 CRYST1 95.953 95.953 115.498 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010422 0.006017 0.000000 0.00000 SCALE2 0.000000 0.012034 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008658 0.00000