HEADER HYDROLASE 05-JUN-18 6A0N TITLE THE CRYSTAL STRUCTURE OF APO-LPG2622 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LPG2622; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 20-353; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. SOURCE 3 PHILADELPHIA 1; SOURCE 4 ORGANISM_TAXID: 272624; SOURCE 5 STRAIN: PHILADELPHIA 1; SOURCE 6 GENE: LPG2622; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYSTEINE PROTEASES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.GONG,H.GE REVDAT 1 12-SEP-18 6A0N 0 JRNL AUTH X.GONG,X.ZHAO,W.ZHANG,J.WANG,X.CHEN,M.F.HAMEED,N.ZHANG,H.GE JRNL TITL STRUCTURAL CHARACTERIZATION OF THE HYPOTHETICAL PROTEIN JRNL TITL 2 LPG2622, A NEW MEMBER OF THE C1 FAMILY PEPTIDASES FROM JRNL TITL 3 LEGIONELLA PNEUMOPHILA JRNL REF FEBS LETT. V. 592 2798 2018 JRNL REFN ISSN 1873-3468 JRNL PMID 30071124 JRNL DOI 10.1002/1873-3468.13210 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 59115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3154 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4259 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 223 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5057 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70000 REMARK 3 B22 (A**2) : 0.70000 REMARK 3 B33 (A**2) : -2.26000 REMARK 3 B12 (A**2) : 0.35000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.481 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5161 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4833 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6987 ; 1.852 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11155 ; 0.875 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 644 ; 6.183 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 236 ;36.680 ;25.593 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 886 ;18.023 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.781 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 765 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5881 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1133 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2591 ; 3.674 ; 3.795 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2590 ; 3.670 ; 3.794 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3230 ; 5.028 ; 5.667 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3231 ; 5.027 ; 5.668 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2566 ; 4.601 ; 4.283 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2567 ; 4.600 ; 4.284 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3757 ; 6.787 ; 6.231 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5992 ; 8.581 ;30.646 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5947 ; 8.591 ;30.647 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6A0N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1300007980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97916 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59115 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4M SODIUM ACETATE TRIHYDRATE, PH REMARK 280 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.61350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.61350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.61350 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 56.61350 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 56.61350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 56.61350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -169.84050 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 497 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 11 REMARK 465 GLY A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 MET A 19 REMARK 465 THR A 75 REMARK 465 ALA A 76 REMARK 465 SER A 77 REMARK 465 PHE A 78 REMARK 465 SER A 79 REMARK 465 MET B 11 REMARK 465 GLY B 12 REMARK 465 HIS B 13 REMARK 465 HIS B 14 REMARK 465 HIS B 15 REMARK 465 HIS B 16 REMARK 465 HIS B 17 REMARK 465 HIS B 18 REMARK 465 MET B 19 REMARK 465 LYS B 35 REMARK 465 ASN B 36 REMARK 465 PRO B 37 REMARK 465 SER B 38 REMARK 465 GLY B 39 REMARK 465 VAL B 40 REMARK 465 ALA B 41 REMARK 465 GLN B 42 REMARK 465 SER B 43 REMARK 465 THR B 75 REMARK 465 ALA B 76 REMARK 465 SER B 77 REMARK 465 PHE B 78 REMARK 465 SER B 79 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 195 O HOH A 401 2.04 REMARK 500 OD2 ASP B 296 O HOH B 401 2.12 REMARK 500 OE1 GLU B 196 O HOH B 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 67 OE1 GLU B 67 7554 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 347 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 25 67.10 -151.35 REMARK 500 PRO A 37 155.80 -40.13 REMARK 500 SER A 43 67.76 63.16 REMARK 500 GLU A 81 47.03 -96.95 REMARK 500 SER A 149 -170.24 -170.79 REMARK 500 ASN A 262 -63.12 -93.53 REMARK 500 TYR A 285 9.47 -153.45 REMARK 500 SER A 320 164.36 75.89 REMARK 500 LYS B 25 58.00 -142.96 REMARK 500 GLN B 91 45.76 34.43 REMARK 500 SER B 320 163.80 86.21 REMARK 500 REMARK 500 REMARK: NULL DBREF 6A0N A 20 353 UNP Q5ZS97 Q5ZS97_LEGPH 20 353 DBREF 6A0N B 20 353 UNP Q5ZS97 Q5ZS97_LEGPH 20 353 SEQADV 6A0N MET A 11 UNP Q5ZS97 EXPRESSION TAG SEQADV 6A0N GLY A 12 UNP Q5ZS97 EXPRESSION TAG SEQADV 6A0N HIS A 13 UNP Q5ZS97 EXPRESSION TAG SEQADV 6A0N HIS A 14 UNP Q5ZS97 EXPRESSION TAG SEQADV 6A0N HIS A 15 UNP Q5ZS97 EXPRESSION TAG SEQADV 6A0N HIS A 16 UNP Q5ZS97 EXPRESSION TAG SEQADV 6A0N HIS A 17 UNP Q5ZS97 EXPRESSION TAG SEQADV 6A0N HIS A 18 UNP Q5ZS97 EXPRESSION TAG SEQADV 6A0N MET A 19 UNP Q5ZS97 EXPRESSION TAG SEQADV 6A0N MET B 11 UNP Q5ZS97 EXPRESSION TAG SEQADV 6A0N GLY B 12 UNP Q5ZS97 EXPRESSION TAG SEQADV 6A0N HIS B 13 UNP Q5ZS97 EXPRESSION TAG SEQADV 6A0N HIS B 14 UNP Q5ZS97 EXPRESSION TAG SEQADV 6A0N HIS B 15 UNP Q5ZS97 EXPRESSION TAG SEQADV 6A0N HIS B 16 UNP Q5ZS97 EXPRESSION TAG SEQADV 6A0N HIS B 17 UNP Q5ZS97 EXPRESSION TAG SEQADV 6A0N HIS B 18 UNP Q5ZS97 EXPRESSION TAG SEQADV 6A0N MET B 19 UNP Q5ZS97 EXPRESSION TAG SEQRES 1 A 343 MET GLY HIS HIS HIS HIS HIS HIS MET GLY PRO LEU THR SEQRES 2 A 343 LEU LYS GLY GLU VAL ASP VAL HIS ILE THR PRO LYS ASN SEQRES 3 A 343 PRO SER GLY VAL ALA GLN SER LEU THR PHE LYS LEU PRO SEQRES 4 A 343 LYS TYR GLU LEU SER THR GLU ALA LYS SER TYR LEU ARG SEQRES 5 A 343 GLU GLN LEU SER GLU TYR PRO LYS ASN SER ILE ASN THR SEQRES 6 A 343 ALA SER PHE SER SER GLU LEU PRO ARG LYS VAL LYS LEU SEQRES 7 A 343 GLY MET GLN LEU THR PRO VAL LEU ASP GLN GLY TYR HIS SEQRES 8 A 343 GLY SER CYS VAL THR PHE ALA VAL THR ALA ALA ILE ASP SEQRES 9 A 343 ALA ALA LEU GLY ALA GLY ASP TYR ILE SER GLN LEU CYS SEQRES 10 A 343 ASN LEU GLU LEU GLY SER TYR LEU ALA ILE HIS ASP LYS SEQRES 11 A 343 ALA LYS ALA SER GLY TRP ASN GLY SER PHE GLY TYR TRP SEQRES 12 A 343 VAL LEU GLN GLN ILE SER GLU TYR GLY ILE ILE SER GLN SEQRES 13 A 343 ASN TYR GLN LYS LEU ASN GLY CYS ALA GLY VAL ARG GLU SEQRES 14 A 343 TYR PRO LEU GLU ASP GLU ASN ASN GLU GLY LYS PRO MET SEQRES 15 A 343 SER ASP SER GLU PHE LEU ALA HIS SER VAL PRO VAL SER SEQRES 16 A 343 ASN LEU ILE SER TRP GLU ALA LEU LEU LYS ASP GLU GLU SEQRES 17 A 343 SER PHE SER ALA LYS ALA ASP MET ASN GLN ILE VAL TYR SEQRES 18 A 343 GLN ILE LYS GLU GLU LEU ALA LYS GLY ASN ARG LEU THR SEQRES 19 A 343 ILE GLY MET LEU LEU ASP VAL PHE VAL GLY ASP ALA GLY SEQRES 20 A 343 ALA VAL GLY THR ASN ARG ALA TYR ASN ASP THR TRP MET SEQRES 21 A 343 LEU THR PRO GLU ILE VAL LEU ASP ALA MET ASN GLY MET SEQRES 22 A 343 ILE TYR ALA GLY HIS GLU LEU VAL ILE THR GLY TYR ASP SEQRES 23 A 343 ASP ASP LEU GLU VAL MET ASP GLU GLU GLY HIS VAL ASN SEQRES 24 A 343 LYS GLY VAL PHE THR LEU ARG ASN SER TRP SER LYS PHE SEQRES 25 A 343 ALA GLY ASP GLN GLY ASP TYR TYR VAL THR TYR ASP TYR SEQRES 26 A 343 VAL LYS PHE LEU ALA MET GLU VAL MET ALA ILE ARG MET SEQRES 27 A 343 LYS GLU LYS ALA ALA SEQRES 1 B 343 MET GLY HIS HIS HIS HIS HIS HIS MET GLY PRO LEU THR SEQRES 2 B 343 LEU LYS GLY GLU VAL ASP VAL HIS ILE THR PRO LYS ASN SEQRES 3 B 343 PRO SER GLY VAL ALA GLN SER LEU THR PHE LYS LEU PRO SEQRES 4 B 343 LYS TYR GLU LEU SER THR GLU ALA LYS SER TYR LEU ARG SEQRES 5 B 343 GLU GLN LEU SER GLU TYR PRO LYS ASN SER ILE ASN THR SEQRES 6 B 343 ALA SER PHE SER SER GLU LEU PRO ARG LYS VAL LYS LEU SEQRES 7 B 343 GLY MET GLN LEU THR PRO VAL LEU ASP GLN GLY TYR HIS SEQRES 8 B 343 GLY SER CYS VAL THR PHE ALA VAL THR ALA ALA ILE ASP SEQRES 9 B 343 ALA ALA LEU GLY ALA GLY ASP TYR ILE SER GLN LEU CYS SEQRES 10 B 343 ASN LEU GLU LEU GLY SER TYR LEU ALA ILE HIS ASP LYS SEQRES 11 B 343 ALA LYS ALA SER GLY TRP ASN GLY SER PHE GLY TYR TRP SEQRES 12 B 343 VAL LEU GLN GLN ILE SER GLU TYR GLY ILE ILE SER GLN SEQRES 13 B 343 ASN TYR GLN LYS LEU ASN GLY CYS ALA GLY VAL ARG GLU SEQRES 14 B 343 TYR PRO LEU GLU ASP GLU ASN ASN GLU GLY LYS PRO MET SEQRES 15 B 343 SER ASP SER GLU PHE LEU ALA HIS SER VAL PRO VAL SER SEQRES 16 B 343 ASN LEU ILE SER TRP GLU ALA LEU LEU LYS ASP GLU GLU SEQRES 17 B 343 SER PHE SER ALA LYS ALA ASP MET ASN GLN ILE VAL TYR SEQRES 18 B 343 GLN ILE LYS GLU GLU LEU ALA LYS GLY ASN ARG LEU THR SEQRES 19 B 343 ILE GLY MET LEU LEU ASP VAL PHE VAL GLY ASP ALA GLY SEQRES 20 B 343 ALA VAL GLY THR ASN ARG ALA TYR ASN ASP THR TRP MET SEQRES 21 B 343 LEU THR PRO GLU ILE VAL LEU ASP ALA MET ASN GLY MET SEQRES 22 B 343 ILE TYR ALA GLY HIS GLU LEU VAL ILE THR GLY TYR ASP SEQRES 23 B 343 ASP ASP LEU GLU VAL MET ASP GLU GLU GLY HIS VAL ASN SEQRES 24 B 343 LYS GLY VAL PHE THR LEU ARG ASN SER TRP SER LYS PHE SEQRES 25 B 343 ALA GLY ASP GLN GLY ASP TYR TYR VAL THR TYR ASP TYR SEQRES 26 B 343 VAL LYS PHE LEU ALA MET GLU VAL MET ALA ILE ARG MET SEQRES 27 B 343 LYS GLU LYS ALA ALA FORMUL 3 HOH *169(H2 O) HELIX 1 AA1 SER A 54 GLU A 67 1 14 HELIX 2 AA2 SER A 103 GLY A 118 1 16 HELIX 3 AA3 SER A 124 HIS A 138 1 15 HELIX 4 AA4 PHE A 150 GLY A 162 1 13 HELIX 5 AA5 SER A 165 GLY A 173 1 9 HELIX 6 AA6 SER A 193 SER A 201 1 9 HELIX 7 AA7 PRO A 203 ASN A 206 5 4 HELIX 8 AA8 LYS A 215 SER A 219 5 5 HELIX 9 AA9 ASP A 225 LYS A 239 1 15 HELIX 10 AB1 THR A 272 ASN A 281 1 10 HELIX 11 AB2 TYR A 333 LEU A 339 1 7 HELIX 12 AB3 SER B 54 GLU B 67 1 14 HELIX 13 AB4 SER B 103 GLY B 118 1 16 HELIX 14 AB5 SER B 124 HIS B 138 1 15 HELIX 15 AB6 PHE B 150 GLY B 162 1 13 HELIX 16 AB7 SER B 165 GLY B 173 1 9 HELIX 17 AB8 SER B 193 SER B 201 1 9 HELIX 18 AB9 PRO B 203 ASN B 206 5 4 HELIX 19 AC1 LYS B 215 SER B 219 5 5 HELIX 20 AC2 ASP B 225 LYS B 239 1 15 HELIX 21 AC3 THR B 272 ASN B 281 1 10 HELIX 22 AC4 TYR B 333 LEU B 339 1 7 SHEET 1 AA1 2 LEU A 22 ILE A 32 0 SHEET 2 AA1 2 LEU A 44 LEU A 53 -1 O LYS A 50 N LYS A 25 SHEET 1 AA210 LYS A 85 LYS A 87 0 SHEET 2 AA210 ILE A 208 LEU A 214 0 SHEET 3 AA210 GLY A 260 THR A 261 0 SHEET 4 AA210 THR A 268 TRP A 269 -1 O THR A 268 N GLY A 260 SHEET 5 AA210 ASP A 328 THR A 332 1 O TYR A 330 N TRP A 269 SHEET 6 AA210 VAL A 308 ARG A 316 -1 N LEU A 315 O TYR A 329 SHEET 7 AA210 ALA A 286 ASP A 303 -1 N LEU A 299 O GLY A 311 SHEET 8 AA210 LEU A 243 LEU A 249 -1 N LEU A 249 O ALA A 286 SHEET 9 AA210 ALA A 340 MET A 348 -1 O MET A 341 N GLY A 246 SHEET 10 AA210 ILE A 208 LEU A 214 -1 N GLU A 211 O ALA A 345 SHEET 1 AA3 2 LEU B 22 HIS B 31 0 SHEET 2 AA3 2 THR B 45 LEU B 53 -1 O LYS B 50 N LYS B 25 SHEET 1 AA4 5 LYS B 85 LYS B 87 0 SHEET 2 AA4 5 ALA B 286 MET B 302 -1 O TYR B 295 N VAL B 86 SHEET 3 AA4 5 LEU B 243 LEU B 249 -1 N LEU B 243 O ILE B 292 SHEET 4 AA4 5 ALA B 340 MET B 348 -1 O MET B 341 N GLY B 246 SHEET 5 AA4 5 ILE B 208 LEU B 214 -1 N LEU B 213 O VAL B 343 SHEET 1 AA5 5 LYS B 85 LYS B 87 0 SHEET 2 AA5 5 ALA B 286 MET B 302 -1 O TYR B 295 N VAL B 86 SHEET 3 AA5 5 VAL B 308 ARG B 316 -1 O THR B 314 N THR B 293 SHEET 4 AA5 5 ASP B 328 THR B 332 -1 O VAL B 331 N PHE B 313 SHEET 5 AA5 5 THR B 268 TRP B 269 1 N TRP B 269 O TYR B 330 SSBOND 1 CYS A 127 CYS A 174 1555 1555 2.00 SSBOND 2 CYS B 127 CYS B 174 1555 1555 2.00 CISPEP 1 TYR A 68 PRO A 69 0 6.97 CISPEP 2 SER A 80 GLU A 81 0 -8.28 CISPEP 3 TYR B 68 PRO B 69 0 7.92 CISPEP 4 SER B 80 GLU B 81 0 -14.31 CRYST1 178.628 178.628 113.227 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005598 0.003232 0.000000 0.00000 SCALE2 0.000000 0.006464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008832 0.00000