HEADER DNA BINDING PROTEIN 09-JUN-18 6A27 TITLE CRYSTAL STRUCTURE OF PPRA W183R MUTANT FORM 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR PROTEIN PPRA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PLEIOTROPIC PROTEIN PROMOTING DNA REPAIR; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS R1; SOURCE 3 ORGANISM_TAXID: 243230; SOURCE 4 STRAIN: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / SOURCE 5 NCIMB 9279 / R1 / VKM B-1422; SOURCE 6 GENE: PPRA, DR_A0346; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.ADACHI,C.SHIBAZAKI,R.SHIMIZU,S.ARAI,K.SATOH,I.NARUMI,R.KUROKI REVDAT 3 22-NOV-23 6A27 1 REMARK REVDAT 2 13-MAR-19 6A27 1 JRNL REVDAT 1 26-DEC-18 6A27 0 JRNL AUTH M.ADACHI,R.SHIMIZU,C.SHIBAZAKI,K.SATOH,S.FUJIWARA,S.ARAI, JRNL AUTH 2 I.NARUMI,R.KUROKI JRNL TITL EXTENDED STRUCTURE OF PLEIOTROPIC DNA REPAIR-PROMOTING JRNL TITL 2 PROTEIN PPRA FROM DEINOCOCCUS RADIODURANS. JRNL REF FASEB J. V. 33 3647 2019 JRNL REFN ESSN 1530-6860 JRNL PMID 30481062 JRNL DOI 10.1096/FJ.201801506R REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 76889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3845 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.7247 - 4.0535 0.75 2252 119 0.2049 0.2245 REMARK 3 2 4.0535 - 3.2194 0.94 2766 146 0.1610 0.1651 REMARK 3 3 3.2194 - 2.8130 0.97 2855 150 0.1670 0.1845 REMARK 3 4 2.8130 - 2.5561 0.93 2725 144 0.1852 0.2270 REMARK 3 5 2.5561 - 2.3730 0.90 2659 139 0.1680 0.1823 REMARK 3 6 2.3730 - 2.2332 0.90 2657 139 0.1645 0.1910 REMARK 3 7 2.2332 - 2.1214 0.90 2628 139 0.1597 0.1945 REMARK 3 8 2.1214 - 2.0291 0.91 2661 140 0.1662 0.2020 REMARK 3 9 2.0291 - 1.9510 0.91 2667 141 0.1663 0.1783 REMARK 3 10 1.9510 - 1.8837 0.92 2663 140 0.1676 0.1897 REMARK 3 11 1.8837 - 1.8248 0.91 2717 142 0.1693 0.1961 REMARK 3 12 1.8248 - 1.7727 0.92 2676 141 0.1693 0.2229 REMARK 3 13 1.7727 - 1.7260 0.93 2735 145 0.1753 0.1837 REMARK 3 14 1.7260 - 1.6839 0.94 2745 144 0.1706 0.2101 REMARK 3 15 1.6839 - 1.6456 0.93 2721 144 0.1699 0.1823 REMARK 3 16 1.6456 - 1.6106 0.95 2779 145 0.1740 0.2323 REMARK 3 17 1.6106 - 1.5784 0.93 2757 145 0.1818 0.2025 REMARK 3 18 1.5784 - 1.5486 0.95 2719 144 0.1880 0.2338 REMARK 3 19 1.5486 - 1.5210 0.94 2798 147 0.1912 0.2318 REMARK 3 20 1.5210 - 1.4952 0.95 2743 144 0.2033 0.2426 REMARK 3 21 1.4952 - 1.4711 0.94 2786 148 0.1999 0.2473 REMARK 3 22 1.4711 - 1.4484 0.96 2773 145 0.2194 0.2369 REMARK 3 23 1.4484 - 1.4271 0.94 2806 148 0.2220 0.2577 REMARK 3 24 1.4271 - 1.4070 0.95 2767 146 0.2296 0.2474 REMARK 3 25 1.4070 - 1.3880 0.94 2748 144 0.2414 0.2754 REMARK 3 26 1.3880 - 1.3700 0.94 2733 144 0.2571 0.2717 REMARK 3 27 1.3700 - 1.3529 0.86 2508 132 0.2609 0.3226 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3116 REMARK 3 ANGLE : 1.034 4226 REMARK 3 CHIRALITY : 0.064 461 REMARK 3 PLANARITY : 0.005 563 REMARK 3 DIHEDRAL : 14.163 1098 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6A27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1300008045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76916 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 25.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX 1.9_1692 REMARK 200 STARTING MODEL: 6A28 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 22.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS BUFFER (PH 8.5) CONTAINING REMARK 280 0.2 M LISO4 AND 30% PEG4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.67850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 ALA A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 ASP A 8 REMARK 465 GLN A 9 REMARK 465 THR A 10 REMARK 465 ASP A 11 REMARK 465 SER A 173 REMARK 465 ALA A 174 REMARK 465 GLU A 175 REMARK 465 ALA A 176 REMARK 465 ALA A 177 REMARK 465 LEU A 178 REMARK 465 SER A 179 REMARK 465 ASP A 180 REMARK 465 ALA A 181 REMARK 465 ALA A 182 REMARK 465 ARG A 183 REMARK 465 ASP A 184 REMARK 465 VAL A 185 REMARK 465 ILE A 186 REMARK 465 ALA A 187 REMARK 465 SER A 188 REMARK 465 ILE A 189 REMARK 465 LYS A 190 REMARK 465 ASP A 191 REMARK 465 ARG A 192 REMARK 465 ALA A 193 REMARK 465 PHE A 194 REMARK 465 GLN A 195 REMARK 465 ARG A 196 REMARK 465 GLU A 197 REMARK 465 LEU A 198 REMARK 465 MET A 199 REMARK 465 ARG A 200 REMARK 465 ARG A 201 REMARK 465 SER A 202 REMARK 465 GLU A 203 REMARK 465 LYS A 204 REMARK 465 ASP A 205 REMARK 465 GLY A 206 REMARK 465 MET A 207 REMARK 465 LEU A 208 REMARK 465 GLY A 209 REMARK 465 ALA A 210 REMARK 465 LEU A 211 REMARK 465 LEU A 212 REMARK 465 GLY A 213 REMARK 465 ALA A 214 REMARK 465 ARG A 215 REMARK 465 HIS A 216 REMARK 465 ALA A 217 REMARK 465 GLY A 218 REMARK 465 ALA A 219 REMARK 465 LYS A 220 REMARK 465 ALA A 221 REMARK 465 ASN A 222 REMARK 465 LEU A 223 REMARK 465 ALA A 224 REMARK 465 GLN A 225 REMARK 465 GLY A 267 REMARK 465 VAL A 268 REMARK 465 THR A 269 REMARK 465 THR A 270 REMARK 465 ARG A 271 REMARK 465 GLN A 272 REMARK 465 LEU A 273 REMARK 465 SER A 274 REMARK 465 GLU A 275 REMARK 465 VAL A 276 REMARK 465 LEU A 277 REMARK 465 ARG A 278 REMARK 465 HIS A 279 REMARK 465 GLY A 280 REMARK 465 LEU A 281 REMARK 465 ARG A 282 REMARK 465 GLU A 283 REMARK 465 SER A 284 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ARG B 3 REMARK 465 ALA B 4 REMARK 465 LYS B 5 REMARK 465 ALA B 6 REMARK 465 LYS B 7 REMARK 465 ASP B 8 REMARK 465 GLN B 9 REMARK 465 THR B 10 REMARK 465 ASP B 11 REMARK 465 ALA B 172 REMARK 465 SER B 173 REMARK 465 ALA B 174 REMARK 465 GLU B 175 REMARK 465 ALA B 176 REMARK 465 ALA B 177 REMARK 465 LEU B 178 REMARK 465 SER B 179 REMARK 465 ASP B 180 REMARK 465 ALA B 181 REMARK 465 ALA B 182 REMARK 465 ARG B 183 REMARK 465 ASP B 184 REMARK 465 VAL B 185 REMARK 465 ILE B 186 REMARK 465 ALA B 187 REMARK 465 SER B 188 REMARK 465 ILE B 189 REMARK 465 LYS B 190 REMARK 465 ASP B 191 REMARK 465 ARG B 192 REMARK 465 ALA B 193 REMARK 465 PHE B 194 REMARK 465 GLN B 195 REMARK 465 ARG B 196 REMARK 465 GLU B 197 REMARK 465 LEU B 198 REMARK 465 MET B 199 REMARK 465 ARG B 200 REMARK 465 ARG B 201 REMARK 465 SER B 202 REMARK 465 GLU B 203 REMARK 465 LYS B 204 REMARK 465 ASP B 205 REMARK 465 GLY B 206 REMARK 465 MET B 207 REMARK 465 LEU B 208 REMARK 465 GLY B 209 REMARK 465 ALA B 210 REMARK 465 LEU B 211 REMARK 465 LEU B 212 REMARK 465 GLY B 213 REMARK 465 ALA B 214 REMARK 465 ARG B 215 REMARK 465 HIS B 216 REMARK 465 ALA B 217 REMARK 465 GLY B 218 REMARK 465 ALA B 219 REMARK 465 LYS B 220 REMARK 465 ALA B 221 REMARK 465 ASN B 222 REMARK 465 LEU B 223 REMARK 465 ALA B 224 REMARK 465 GLN B 225 REMARK 465 LEU B 226 REMARK 465 GLY B 267 REMARK 465 VAL B 268 REMARK 465 THR B 269 REMARK 465 THR B 270 REMARK 465 ARG B 271 REMARK 465 GLN B 272 REMARK 465 LEU B 273 REMARK 465 SER B 274 REMARK 465 GLU B 275 REMARK 465 VAL B 276 REMARK 465 LEU B 277 REMARK 465 ARG B 278 REMARK 465 HIS B 279 REMARK 465 GLY B 280 REMARK 465 LEU B 281 REMARK 465 ARG B 282 REMARK 465 GLU B 283 REMARK 465 SER B 284 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1041 O HOH A 1120 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ASP B 73 NE2 GLN B 155 1554 2.16 REMARK 500 O HOH A 1040 O HOH B 477 1455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 140 -123.47 -97.44 REMARK 500 ARG B 140 -129.43 -94.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1171 DISTANCE = 5.96 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 802 DBREF 6A27 A 1 284 UNP O32504 PPRA_DEIRA 17 300 DBREF 6A27 B 1 284 UNP O32504 PPRA_DEIRA 17 300 SEQADV 6A27 ARG A 183 UNP O32504 TRP 199 ENGINEERED MUTATION SEQADV 6A27 ARG B 183 UNP O32504 TRP 199 ENGINEERED MUTATION SEQRES 1 A 284 MET ALA ARG ALA LYS ALA LYS ASP GLN THR ASP GLY ILE SEQRES 2 A 284 TYR ALA ALA PHE ASP THR LEU MET SER THR ALA GLY VAL SEQRES 3 A 284 ASP SER GLN ILE ALA ALA LEU ALA ALA SER GLU ALA ASP SEQRES 4 A 284 ALA GLY THR LEU ASP ALA ALA LEU THR GLN SER LEU GLN SEQRES 5 A 284 GLU ALA GLN GLY ARG TRP GLY LEU GLY LEU HIS HIS LEU SEQRES 6 A 284 ARG HIS GLU ALA ARG LEU THR ASP ASP GLY ASP ILE GLU SEQRES 7 A 284 ILE LEU THR ASP GLY ARG PRO SER ALA ARG VAL SER GLU SEQRES 8 A 284 GLY PHE GLY ALA LEU ALA GLN ALA TYR ALA PRO MET GLN SEQRES 9 A 284 ALA LEU ASP GLU ARG GLY LEU SER GLN TRP ALA ALA LEU SEQRES 10 A 284 GLY GLU GLY TYR ARG ALA PRO GLY ASP LEU PRO LEU ALA SEQRES 11 A 284 GLN LEU LYS VAL LEU ILE GLU HIS ALA ARG ASP PHE GLU SEQRES 12 A 284 THR ASP TRP SER ALA GLY ARG GLY GLU THR PHE GLN ARG SEQRES 13 A 284 VAL TRP ARG LYS GLY ASP THR LEU PHE VAL GLU VAL ALA SEQRES 14 A 284 ARG PRO ALA SER ALA GLU ALA ALA LEU SER ASP ALA ALA SEQRES 15 A 284 ARG ASP VAL ILE ALA SER ILE LYS ASP ARG ALA PHE GLN SEQRES 16 A 284 ARG GLU LEU MET ARG ARG SER GLU LYS ASP GLY MET LEU SEQRES 17 A 284 GLY ALA LEU LEU GLY ALA ARG HIS ALA GLY ALA LYS ALA SEQRES 18 A 284 ASN LEU ALA GLN LEU PRO GLU ALA HIS PHE THR VAL GLN SEQRES 19 A 284 ALA PHE VAL GLN THR LEU SER GLY ALA ALA ALA ARG ASN SEQRES 20 A 284 ALA GLU GLU TYR ARG ALA ALA LEU LYS THR ALA ALA ALA SEQRES 21 A 284 ALA LEU GLU GLU TYR GLN GLY VAL THR THR ARG GLN LEU SEQRES 22 A 284 SER GLU VAL LEU ARG HIS GLY LEU ARG GLU SER SEQRES 1 B 284 MET ALA ARG ALA LYS ALA LYS ASP GLN THR ASP GLY ILE SEQRES 2 B 284 TYR ALA ALA PHE ASP THR LEU MET SER THR ALA GLY VAL SEQRES 3 B 284 ASP SER GLN ILE ALA ALA LEU ALA ALA SER GLU ALA ASP SEQRES 4 B 284 ALA GLY THR LEU ASP ALA ALA LEU THR GLN SER LEU GLN SEQRES 5 B 284 GLU ALA GLN GLY ARG TRP GLY LEU GLY LEU HIS HIS LEU SEQRES 6 B 284 ARG HIS GLU ALA ARG LEU THR ASP ASP GLY ASP ILE GLU SEQRES 7 B 284 ILE LEU THR ASP GLY ARG PRO SER ALA ARG VAL SER GLU SEQRES 8 B 284 GLY PHE GLY ALA LEU ALA GLN ALA TYR ALA PRO MET GLN SEQRES 9 B 284 ALA LEU ASP GLU ARG GLY LEU SER GLN TRP ALA ALA LEU SEQRES 10 B 284 GLY GLU GLY TYR ARG ALA PRO GLY ASP LEU PRO LEU ALA SEQRES 11 B 284 GLN LEU LYS VAL LEU ILE GLU HIS ALA ARG ASP PHE GLU SEQRES 12 B 284 THR ASP TRP SER ALA GLY ARG GLY GLU THR PHE GLN ARG SEQRES 13 B 284 VAL TRP ARG LYS GLY ASP THR LEU PHE VAL GLU VAL ALA SEQRES 14 B 284 ARG PRO ALA SER ALA GLU ALA ALA LEU SER ASP ALA ALA SEQRES 15 B 284 ARG ASP VAL ILE ALA SER ILE LYS ASP ARG ALA PHE GLN SEQRES 16 B 284 ARG GLU LEU MET ARG ARG SER GLU LYS ASP GLY MET LEU SEQRES 17 B 284 GLY ALA LEU LEU GLY ALA ARG HIS ALA GLY ALA LYS ALA SEQRES 18 B 284 ASN LEU ALA GLN LEU PRO GLU ALA HIS PHE THR VAL GLN SEQRES 19 B 284 ALA PHE VAL GLN THR LEU SER GLY ALA ALA ALA ARG ASN SEQRES 20 B 284 ALA GLU GLU TYR ARG ALA ALA LEU LYS THR ALA ALA ALA SEQRES 21 B 284 ALA LEU GLU GLU TYR GLN GLY VAL THR THR ARG GLN LEU SEQRES 22 B 284 SER GLU VAL LEU ARG HIS GLY LEU ARG GLU SER HET SO4 A 801 5 HET GOL A 802 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 O4 S 2- FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *500(H2 O) HELIX 1 AA1 GLY A 12 THR A 23 1 12 HELIX 2 AA2 GLN A 29 SER A 36 1 8 HELIX 3 AA3 ASP A 39 GLY A 59 1 21 HELIX 4 AA4 GLY A 92 ALA A 101 1 10 HELIX 5 AA5 PRO A 102 GLN A 104 5 3 HELIX 6 AA6 PRO A 128 ALA A 139 1 12 HELIX 7 AA7 ARG A 150 GLU A 152 5 3 HELIX 8 AA8 ALA A 243 ALA A 248 5 6 HELIX 9 AA9 GLU A 249 GLN A 266 1 18 HELIX 10 AB1 ILE B 13 THR B 23 1 11 HELIX 11 AB2 GLN B 29 SER B 36 1 8 HELIX 12 AB3 ASP B 39 GLY B 59 1 21 HELIX 13 AB4 GLU B 91 ALA B 101 1 11 HELIX 14 AB5 PRO B 102 GLN B 104 5 3 HELIX 15 AB6 PRO B 128 ALA B 139 1 12 HELIX 16 AB7 ARG B 150 GLU B 152 5 3 HELIX 17 AB8 ALA B 243 ARG B 246 5 4 HELIX 18 AB9 ASN B 247 GLN B 266 1 20 SHEET 1 AA1 3 HIS A 67 LEU A 71 0 SHEET 2 AA1 3 ILE A 77 THR A 81 -1 O LEU A 80 N GLU A 68 SHEET 3 AA1 3 ARG A 84 ARG A 88 -1 O ALA A 87 N ILE A 79 SHEET 1 AA2 3 PHE A 142 GLU A 143 0 SHEET 2 AA2 3 PHE A 154 LYS A 160 -1 O ARG A 159 N PHE A 142 SHEET 3 AA2 3 SER A 147 ALA A 148 -1 N SER A 147 O GLN A 155 SHEET 1 AA3 4 PHE A 142 GLU A 143 0 SHEET 2 AA3 4 PHE A 154 LYS A 160 -1 O ARG A 159 N PHE A 142 SHEET 3 AA3 4 THR A 163 ALA A 169 -1 O PHE A 165 N TRP A 158 SHEET 4 AA3 4 ALA A 235 SER A 241 -1 O LEU A 240 N LEU A 164 SHEET 1 AA4 3 HIS B 67 LEU B 71 0 SHEET 2 AA4 3 ILE B 77 THR B 81 -1 O LEU B 80 N GLU B 68 SHEET 3 AA4 3 ARG B 84 ARG B 88 -1 O ALA B 87 N ILE B 79 SHEET 1 AA5 3 PHE B 142 GLU B 143 0 SHEET 2 AA5 3 PHE B 154 LYS B 160 -1 O ARG B 159 N PHE B 142 SHEET 3 AA5 3 SER B 147 ALA B 148 -1 N SER B 147 O GLN B 155 SHEET 1 AA6 4 PHE B 142 GLU B 143 0 SHEET 2 AA6 4 PHE B 154 LYS B 160 -1 O ARG B 159 N PHE B 142 SHEET 3 AA6 4 THR B 163 ALA B 169 -1 O PHE B 165 N TRP B 158 SHEET 4 AA6 4 ALA B 235 SER B 241 -1 O LEU B 240 N LEU B 164 SITE 1 AC1 7 TYR A 14 PRO A 128 LEU A 129 GOL A 802 SITE 2 AC1 7 HOH A 938 HOH A 955 HOH A1071 SITE 1 AC2 9 TYR A 14 ALA A 34 GLU A 37 ALA A 38 SITE 2 AC2 9 LEU A 43 LEU A 129 ALA A 130 SO4 A 801 SITE 3 AC2 9 HOH A 945 CRYST1 43.459 99.357 48.101 90.00 110.05 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023010 0.000000 0.008397 0.00000 SCALE2 0.000000 0.010065 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022131 0.00000