HEADER EXOCYTOSIS 14-JUN-18 6A30 TITLE CRYSTAL STRUCTURE OF MUNC13-1 MUN DOMAIN AND SYNAPTOBREVIN-2 TITLE 2 JUXTAMEMBRANE LINKER REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN UNC-13 HOMOLOG A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MUN DOMAIN; COMPND 5 SYNONYM: MUNC13-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SYNAPTOBREVIN-2 JUXTAMEMBRANE LINKER PEPTIDE; COMPND 9 CHAIN: P; COMPND 10 SYNONYM: PEPTIDE FROM VESICLE-ASSOCIATED MEMBRANE PROTEIN 2; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: UNC13A, UNC13H1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 11 ORGANISM_COMMON: RAT; SOURCE 12 ORGANISM_TAXID: 10116 KEYWDS SYNAPTIC EXOCYTOSIS, MEMBRANE FUSION, MUNC13, MUNC18, SNARE, KEYWDS 2 SYNAPTOBREVIN, EXOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR S.WANG,Y.LI,J.H.GONG,S.YE,X.F.YANG,R.G.ZHANG,C.MA REVDAT 2 22-NOV-23 6A30 1 REMARK REVDAT 1 30-JAN-19 6A30 0 JRNL AUTH S.WANG,Y.LI,J.H.GONG,S.YE,X.F.YANG,R.G.ZHANG,C.MA JRNL TITL MUNC18 AND MUNC13 SERVE AS A FUNCTIONAL TEMPLATE TO JRNL TITL 2 ORCHESTRATE NEURONAL SNARE COMPLEX ASSEMBLY. JRNL REF NAT COMMUN V. 10 69 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30622273 JRNL DOI 10.1038/S41467-018-08028-6 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 37919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0152 - 6.7237 0.97 2723 149 0.1961 0.2027 REMARK 3 2 6.7237 - 5.3403 1.00 2638 142 0.2388 0.2634 REMARK 3 3 5.3403 - 4.6662 1.00 2646 140 0.1711 0.2116 REMARK 3 4 4.6662 - 4.2400 1.00 2578 146 0.1650 0.2032 REMARK 3 5 4.2400 - 3.9364 1.00 2570 139 0.1858 0.2237 REMARK 3 6 3.9364 - 3.7044 1.00 2550 159 0.2067 0.2468 REMARK 3 7 3.7044 - 3.5190 1.00 2620 125 0.2244 0.2888 REMARK 3 8 3.5190 - 3.3659 1.00 2549 119 0.2413 0.2864 REMARK 3 9 3.3659 - 3.2364 1.00 2541 138 0.2386 0.3040 REMARK 3 10 3.2364 - 3.1247 1.00 2555 140 0.2677 0.3013 REMARK 3 11 3.1247 - 3.0271 1.00 2537 121 0.2499 0.2867 REMARK 3 12 3.0271 - 2.9406 1.00 2564 118 0.2453 0.2788 REMARK 3 13 2.9406 - 2.8632 1.00 2517 138 0.2569 0.3073 REMARK 3 14 2.8632 - 2.7933 0.96 2431 126 0.2833 0.3055 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4418 REMARK 3 ANGLE : 0.883 5967 REMARK 3 CHIRALITY : 0.062 664 REMARK 3 PLANARITY : 0.005 761 REMARK 3 DIHEDRAL : 16.054 1669 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 944 THROUGH 1035 ) REMARK 3 ORIGIN FOR THE GROUP (A): 111.5786 14.3812 13.7376 REMARK 3 T TENSOR REMARK 3 T11: 0.6565 T22: 0.5387 REMARK 3 T33: 0.5066 T12: -0.0481 REMARK 3 T13: 0.0120 T23: 0.0552 REMARK 3 L TENSOR REMARK 3 L11: 0.8956 L22: 8.3780 REMARK 3 L33: 1.7661 L12: -1.1894 REMARK 3 L13: 0.5257 L23: -0.3017 REMARK 3 S TENSOR REMARK 3 S11: -0.0185 S12: -0.1016 S13: -0.3419 REMARK 3 S21: 0.7356 S22: 0.1998 S23: 0.3703 REMARK 3 S31: 0.2772 S32: -0.0094 S33: -0.1794 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1036 THROUGH 1085 ) REMARK 3 ORIGIN FOR THE GROUP (A): 112.7051 35.5873 9.1930 REMARK 3 T TENSOR REMARK 3 T11: 0.6485 T22: 0.4678 REMARK 3 T33: 0.3977 T12: -0.0212 REMARK 3 T13: -0.0525 T23: 0.1073 REMARK 3 L TENSOR REMARK 3 L11: 4.1058 L22: 2.7988 REMARK 3 L33: 5.0277 L12: -1.1803 REMARK 3 L13: -1.2963 L23: -1.9648 REMARK 3 S TENSOR REMARK 3 S11: -0.0801 S12: -0.1467 S13: 0.3389 REMARK 3 S21: -0.2607 S22: -0.0350 S23: -0.0778 REMARK 3 S31: -0.1334 S32: 0.0838 S33: 0.2749 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1086 THROUGH 1165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 99.8479 39.0242 6.1022 REMARK 3 T TENSOR REMARK 3 T11: 0.6091 T22: 0.6723 REMARK 3 T33: 0.5188 T12: -0.0278 REMARK 3 T13: -0.0692 T23: 0.0850 REMARK 3 L TENSOR REMARK 3 L11: 3.0263 L22: 5.6565 REMARK 3 L33: 3.3895 L12: -2.5775 REMARK 3 L13: 0.9690 L23: -4.1473 REMARK 3 S TENSOR REMARK 3 S11: -0.0480 S12: -0.0918 S13: -0.1286 REMARK 3 S21: 0.0351 S22: 0.2145 S23: 0.7319 REMARK 3 S31: -0.1751 S32: -0.6495 S33: -0.1746 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1166 THROUGH 1325 ) REMARK 3 ORIGIN FOR THE GROUP (A): 89.9073 68.5600 -12.8015 REMARK 3 T TENSOR REMARK 3 T11: 0.6602 T22: 0.7686 REMARK 3 T33: 0.7282 T12: 0.0981 REMARK 3 T13: -0.1203 T23: 0.1333 REMARK 3 L TENSOR REMARK 3 L11: 0.9004 L22: 7.4427 REMARK 3 L33: 4.4640 L12: -3.8421 REMARK 3 L13: 2.9996 L23: -4.2006 REMARK 3 S TENSOR REMARK 3 S11: -0.3093 S12: -0.0324 S13: 0.2222 REMARK 3 S21: 0.3941 S22: 0.1623 S23: -0.0909 REMARK 3 S31: -0.5072 S32: -0.2332 S33: 0.1665 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1326 THROUGH 1405 ) REMARK 3 ORIGIN FOR THE GROUP (A): 74.9904 90.8700 -37.4566 REMARK 3 T TENSOR REMARK 3 T11: 0.6553 T22: 0.5917 REMARK 3 T33: 0.6270 T12: 0.0308 REMARK 3 T13: -0.0392 T23: 0.0904 REMARK 3 L TENSOR REMARK 3 L11: 4.3873 L22: 4.8642 REMARK 3 L33: 3.9663 L12: -3.8433 REMARK 3 L13: 3.6712 L23: -3.2399 REMARK 3 S TENSOR REMARK 3 S11: -0.3954 S12: -0.0243 S13: 0.4975 REMARK 3 S21: 0.4250 S22: -0.2049 S23: -0.9180 REMARK 3 S31: -0.3094 S32: 0.5318 S33: 0.4369 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1406 THROUGH 1480 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.6068 88.3728 -36.6250 REMARK 3 T TENSOR REMARK 3 T11: 0.6543 T22: 0.6927 REMARK 3 T33: 0.6012 T12: 0.0456 REMARK 3 T13: 0.0161 T23: 0.1853 REMARK 3 L TENSOR REMARK 3 L11: 2.0222 L22: -0.1409 REMARK 3 L33: 0.9684 L12: 0.0745 REMARK 3 L13: 0.0093 L23: 0.2127 REMARK 3 S TENSOR REMARK 3 S11: 0.0666 S12: -0.3496 S13: -0.3669 REMARK 3 S21: 0.2040 S22: -0.0743 S23: 0.0730 REMARK 3 S31: 0.2261 S32: 0.1272 S33: 0.0270 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 13 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 85.7292 82.1249 -43.5302 REMARK 3 T TENSOR REMARK 3 T11: 1.4724 T22: 1.8431 REMARK 3 T33: 1.1713 T12: 0.3885 REMARK 3 T13: -0.1224 T23: 0.0516 REMARK 3 L TENSOR REMARK 3 L11: 0.0578 L22: 0.1236 REMARK 3 L33: 0.0446 L12: 0.0848 REMARK 3 L13: -0.0376 L23: -0.0584 REMARK 3 S TENSOR REMARK 3 S11: -0.6926 S12: -0.3990 S13: 0.0071 REMARK 3 S21: -0.0700 S22: 2.3853 S23: -1.0206 REMARK 3 S31: 0.2059 S32: -1.0027 S33: 0.2692 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6A30 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1300008078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 - 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37919 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 24.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.66600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4Y21 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MAGNESIUM NITRATE, 2-(N REMARK 280 -MORPHOLINO)ETHANESULFONIC ACID (MES), VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 57.24050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 135.48350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.24050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 135.48350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1039 REMARK 465 PRO A 1040 REMARK 465 ALA A 1041 REMARK 465 LYS A 1042 REMARK 465 LYS A 1043 REMARK 465 GLY A 1044 REMARK 465 GLU A 1045 REMARK 465 VAL A 1046 REMARK 465 PRO A 1047 REMARK 465 PRO A 1048 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 1375 N LYS A 1377 1.71 REMARK 500 NZ LYS A 1063 O HOH A 1501 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A1003 C - N - CA ANGL. DEV. = -9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 996 -74.08 -85.81 REMARK 500 LEU A 999 38.52 -83.09 REMARK 500 SER A1001 102.24 59.63 REMARK 500 PRO A1003 -78.43 -118.48 REMARK 500 ALA A1005 -72.24 41.28 REMARK 500 TYR A1036 -104.23 -104.79 REMARK 500 GLN A1037 -147.20 56.16 REMARK 500 TYR A1079 -60.26 71.47 REMARK 500 ARG A1119 -101.38 53.44 REMARK 500 LEU A1120 -26.90 72.52 REMARK 500 ARG A1150 -126.85 52.21 REMARK 500 VAL A1151 59.56 32.20 REMARK 500 HIS A1178 83.19 -61.48 REMARK 500 PHE A1189 49.38 24.97 REMARK 500 SER A1193 100.46 -160.62 REMARK 500 GLU A1194 -67.74 58.05 REMARK 500 CYS A1257 -157.44 -85.31 REMARK 500 SER A1258 -103.33 58.69 REMARK 500 LYS A1289 -53.18 68.77 REMARK 500 ASN A1371 -79.16 -83.45 REMARK 500 LEU A1372 -40.29 -29.62 REMARK 500 PHE A1375 -146.85 -58.48 REMARK 500 ALA A1376 -39.30 40.24 REMARK 500 THR A1402 -56.51 -143.84 REMARK 500 VAL A1404 31.24 -147.97 REMARK 500 LYS A1413 -54.82 64.73 REMARK 500 ASP A1414 -21.65 -162.44 REMARK 500 MET A1416 87.29 58.02 REMARK 500 ILE A1479 86.41 54.30 REMARK 500 REMARK 500 REMARK: NULL DBREF 6A30 A 944 1407 UNP Q62768 UN13A_RAT 944 1407 DBREF 6A30 A 1410 1480 UNP Q62768 UN13A_RAT 1453 1523 DBREF 6A30 P 13 18 UNP P63045 VAMP2_RAT 87 92 SEQADV 6A30 GLU A 1408 UNP Q62768 LINKER SEQADV 6A30 PHE A 1409 UNP Q62768 LINKER SEQRES 1 A 537 GLU ARG PHE VAL LYS LEU LEU ASP GLN LEU HIS ASN SER SEQRES 2 A 537 LEU ARG ILE ASP LEU SER MET TYR ARG ASN ASN PHE PRO SEQRES 3 A 537 ALA SER SER PRO GLU ARG LEU GLN ASP LEU LYS SER THR SEQRES 4 A 537 VAL ASP LEU LEU THR SER ILE THR PHE PHE ARG MET LYS SEQRES 5 A 537 VAL GLN GLU LEU GLN SER PRO PRO ARG ALA SER GLN VAL SEQRES 6 A 537 VAL LYS ASP CYS VAL LYS ALA CYS LEU ASN SER THR TYR SEQRES 7 A 537 GLU TYR ILE PHE ASN ASN CYS HIS GLU LEU TYR GLY ARG SEQRES 8 A 537 GLU TYR GLN THR ASP PRO ALA LYS LYS GLY GLU VAL PRO SEQRES 9 A 537 PRO GLU GLU GLN GLY PRO SER ILE LYS ASN LEU ASP PHE SEQRES 10 A 537 TRP SER LYS LEU ILE THR LEU ILE VAL SER ILE ILE GLU SEQRES 11 A 537 GLU ASP LYS ASN SER TYR THR PRO CYS LEU ASN GLN PHE SEQRES 12 A 537 PRO GLN GLU LEU ASN VAL GLY LYS ILE SER ALA GLU VAL SEQRES 13 A 537 MET TRP SER LEU PHE ALA GLN ASP MET LYS TYR ALA MET SEQRES 14 A 537 GLU GLU HIS ASP LYS HIS ARG LEU CYS LYS SER ALA ASP SEQRES 15 A 537 TYR MET ASN LEU HIS PHE LYS VAL LYS TRP LEU TYR ASN SEQRES 16 A 537 GLU TYR VAL ALA GLU LEU PRO THR PHE LYS ASP ARG VAL SEQRES 17 A 537 PRO GLU TYR PRO ALA TRP PHE GLU PRO PHE VAL ILE GLN SEQRES 18 A 537 TRP LEU ASP GLU ASN GLU GLU VAL SER ARG ASP PHE LEU SEQRES 19 A 537 HIS GLY ALA LEU GLU ARG ASP LYS LYS ASP GLY PHE GLN SEQRES 20 A 537 GLN THR SER GLU HIS ALA LEU PHE SER CYS SER VAL VAL SEQRES 21 A 537 ASP VAL PHE SER GLN LEU ASN GLN SER PHE GLU ILE ILE SEQRES 22 A 537 LYS LYS LEU GLU CYS PRO ASP PRO GLN ILE VAL GLY HIS SEQRES 23 A 537 TYR MET ARG ARG PHE ALA LYS THR ILE SER ASN VAL LEU SEQRES 24 A 537 LEU GLN TYR ALA ASP ILE VAL SER LYS ASP PHE ALA SER SEQRES 25 A 537 TYR CYS SER LYS GLU LYS GLU LYS VAL PRO CYS ILE LEU SEQRES 26 A 537 MET ASN ASN THR GLN GLN LEU ARG VAL GLN LEU GLU LYS SEQRES 27 A 537 MET PHE GLU ALA MET GLY GLY LYS GLU LEU ASP ALA GLU SEQRES 28 A 537 ALA SER GLY THR LEU LYS GLU LEU GLN VAL LYS LEU ASN SEQRES 29 A 537 ASN VAL LEU ASP GLU LEU SER HIS VAL PHE ALA THR SER SEQRES 30 A 537 PHE GLN PRO HIS ILE GLU GLU CYS VAL ARG GLN MET GLY SEQRES 31 A 537 ASP ILE LEU SER GLN VAL LYS GLY THR GLY ASN VAL PRO SEQRES 32 A 537 ALA SER ALA CYS SER SER VAL ALA GLN ASP ALA ASP ASN SEQRES 33 A 537 VAL LEU GLN PRO ILE MET ASP LEU LEU ASP SER ASN LEU SEQRES 34 A 537 THR LEU PHE ALA LYS ILE CYS GLU LYS THR VAL LEU LYS SEQRES 35 A 537 ARG VAL LEU LYS GLU LEU TRP LYS LEU VAL MET ASN THR SEQRES 36 A 537 MET GLU ARG THR ILE VAL LEU PRO PRO GLU PHE SER LYS SEQRES 37 A 537 LEU LYS ASP HIS MET VAL ARG GLU GLU ALA LYS SER LEU SEQRES 38 A 537 THR PRO LYS GLN CYS ALA VAL VAL GLU LEU ALA LEU ASP SEQRES 39 A 537 THR ILE LYS GLN TYR PHE HIS ALA GLY GLY VAL GLY LEU SEQRES 40 A 537 LYS LYS THR PHE LEU GLU LYS SER PRO ASP LEU GLN SER SEQRES 41 A 537 LEU ARG TYR ALA LEU SER LEU TYR THR GLN ALA THR ASP SEQRES 42 A 537 LEU LEU ILE LYS SEQRES 1 P 6 LYS TYR TRP TRP LYS ASN FORMUL 3 HOH *19(H2 O) HELIX 1 AA1 GLU A 944 SER A 962 1 19 HELIX 2 AA2 MET A 963 PHE A 968 1 6 HELIX 3 AA3 SER A 972 VAL A 996 1 25 HELIX 4 AA4 ALA A 1005 ASN A 1027 1 23 HELIX 5 AA5 ASN A 1027 TYR A 1036 1 10 HELIX 6 AA6 LEU A 1058 SER A 1078 1 21 HELIX 7 AA7 ASN A 1091 ARG A 1119 1 29 HELIX 8 AA8 LYS A 1122 VAL A 1141 1 20 HELIX 9 AA9 LEU A 1144 ASP A 1149 1 6 HELIX 10 AB1 GLU A 1153 ASP A 1187 1 35 HELIX 11 AB2 SER A 1199 LEU A 1219 1 21 HELIX 12 AB3 ASP A 1223 LYS A 1251 1 29 HELIX 13 AB4 ASP A 1252 CYS A 1257 1 6 HELIX 14 AB5 GLU A 1262 MET A 1286 1 25 HELIX 15 AB6 ASP A 1292 SER A 1320 1 29 HELIX 16 AB7 PHE A 1321 GLN A 1338 1 18 HELIX 17 AB8 SER A 1352 PHE A 1375 1 24 HELIX 18 AB9 GLU A 1380 ARG A 1401 1 22 HELIX 19 AC1 THR A 1425 ALA A 1445 1 21 HELIX 20 AC2 LYS A 1451 LYS A 1457 1 7 HELIX 21 AC3 SER A 1458 THR A 1472 1 15 SHEET 1 AA1 2 PHE A1409 SER A1410 0 SHEET 2 AA1 2 VAL A1417 ARG A1418 -1 O VAL A1417 N SER A1410 CISPEP 1 PRO A 1003 ARG A 1004 0 -2.41 CISPEP 2 GLU A 1260 LYS A 1261 0 10.07 CRYST1 114.481 270.967 47.915 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008735 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003690 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020870 0.00000