HEADER ISOMERASE 14-JUN-18 6A34 TITLE CRYSTAL STRUCTURE OF 5-METHYLTHIORIBOSE 1-PHOSPHATE ISOMERASE FROM TITLE 2 PYROCOCCUS HORIKOSHII OT3 - FORM I COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1PI,MTR-1-P ISOMERASE,MTNA-LIKE PROTEIN,AMTNA,S-METHYL-5- COMPND 5 THIORIBOSE-1-PHOSPHATE ISOMERASE; COMPND 6 EC: 5.3.1.23; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII OT3; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT-3; SOURCE 5 ATCC: 700860; SOURCE 6 GENE: PH0702; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS METHIONINE SALVAGE PATHWAY, PH0702, CIS-PHOSPHOENOLATE INTERMEDIATE, KEYWDS 2 HYDRIDE TRANSFER, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.P.KANAUJIA,P.GOGOI,P.MORDINA REVDAT 3 22-NOV-23 6A34 1 REMARK REVDAT 2 06-FEB-19 6A34 1 JRNL REVDAT 1 12-DEC-18 6A34 0 JRNL AUTH P.GOGOI,P.MORDINA,S.P.KANAUJIA JRNL TITL STRUCTURAL INSIGHTS INTO THE CATALYTIC MECHANISM OF JRNL TITL 2 5-METHYLTHIORIBOSE 1-PHOSPHATE ISOMERASE. JRNL REF J. STRUCT. BIOL. V. 205 67 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 30471343 JRNL DOI 10.1016/J.JSB.2018.11.007 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1929 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2804 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5584 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79000 REMARK 3 B22 (A**2) : -0.79000 REMARK 3 B33 (A**2) : 2.55000 REMARK 3 B12 (A**2) : -0.39000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.268 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.257 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5730 ; 0.010 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 5406 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7742 ; 1.453 ; 1.659 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12646 ; 0.903 ; 1.646 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 710 ; 6.720 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 280 ;33.810 ;22.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1010 ;18.619 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;18.425 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 742 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6324 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1020 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6A34 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1300008082. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX-HF REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.1 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.28 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39641 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 84.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.53800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 1T5O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE TRIBASIC DIHYDRATE REMARK 280 PH 5.6, 2.5M 1,6-HEXANEDIOL, MICROBATCH, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.79333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.89667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.89667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.79333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 357 REMARK 465 SER A 358 REMARK 465 GLY A 359 REMARK 465 GLY A 360 REMARK 465 ASP A 361 REMARK 465 GLU A 362 REMARK 465 ALA A 363 REMARK 465 VAL A 364 REMARK 465 LYS B 357 REMARK 465 SER B 358 REMARK 465 GLY B 359 REMARK 465 GLY B 360 REMARK 465 ASP B 361 REMARK 465 GLU B 362 REMARK 465 ALA B 363 REMARK 465 VAL B 364 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 638 O HOH A 644 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 15 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 15 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 98 44.60 -95.88 REMARK 500 THR A 99 -60.35 -100.32 REMARK 500 PRO A 101 -5.11 -53.09 REMARK 500 CYS A 167 -152.08 64.12 REMARK 500 LEU A 177 -44.59 89.16 REMARK 500 THR A 179 -73.86 -89.11 REMARK 500 THR A 201 69.32 71.94 REMARK 500 LEU A 205 35.58 70.79 REMARK 500 ALA B 79 134.08 -24.36 REMARK 500 PRO B 101 8.45 -62.18 REMARK 500 PRO B 124 -154.60 -44.96 REMARK 500 CYS B 167 -159.66 64.03 REMARK 500 LEU B 177 -53.28 87.20 REMARK 500 THR B 179 -75.59 -88.78 REMARK 500 THR B 201 68.51 67.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 15 0.09 SIDE CHAIN REMARK 500 ARG A 57 0.12 SIDE CHAIN REMARK 500 ARG A 100 0.09 SIDE CHAIN REMARK 500 ARG A 269 0.08 SIDE CHAIN REMARK 500 ARG B 57 0.11 SIDE CHAIN REMARK 500 ARG B 209 0.09 SIDE CHAIN REMARK 500 ARG B 299 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEZ A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEZ B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEZ B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEZ B 403 DBREF 6A34 A 1 364 UNP O58433 MTNA_PYRHO 1 364 DBREF 6A34 B 1 364 UNP O58433 MTNA_PYRHO 1 364 SEQRES 1 A 364 MET GLU ILE ARG TYR THR PRO LYS GLU LEU THR LYS LEU SEQRES 2 A 364 PRO ARG THR VAL GLU TYR LYS ASN LYS SER VAL TYR MET SEQRES 3 A 364 ILE ASN GLN ARG LEU LEU PRO LYS GLU PHE LYS VAL GLU SEQRES 4 A 364 LYS PHE SER LYS VAL GLU GLU VAL ALA GLU ALA ILE LYS SEQRES 5 A 364 ASN MET THR VAL ARG GLY ALA PRO ALA ILE GLY ALA ALA SEQRES 6 A 364 ALA GLY PHE GLY LEU ALA LEU TYR ALA GLU THR SER LYS SEQRES 7 A 364 ALA LYS THR LYS GLU GLU PHE LEU ASP GLY PHE GLU LYS SEQRES 8 A 364 ALA TYR GLU ILE LEU LYS ASN THR ARG PRO THR ALA VAL SEQRES 9 A 364 ASN LEU PHE TRP ALA LEU ASN ARG ILE LYS LYS LEU VAL SEQRES 10 A 364 GLU GLU HIS SER GLU ASP PRO LEU ASP GLU ILE LYS ARG SEQRES 11 A 364 LEU ILE VAL GLN GLU ALA TYR LYS ILE ALA ASP GLU ASP SEQRES 12 A 364 VAL GLU ALA ASN LEU ARG MET GLY HIS TYR GLY ALA GLU SEQRES 13 A 364 VAL LEU PRO GLU GLY ASN ILE LEU THR HIS CYS ASN ALA SEQRES 14 A 364 GLY SER LEU ALA THR VAL HIS LEU GLY THR VAL GLY SER SEQRES 15 A 364 VAL VAL ARG VAL MET HIS LYS ASP GLY SER LEU LYS LEU SEQRES 16 A 364 LEU TRP LEU ASP GLU THR ARG PRO VAL LEU GLN GLY ALA SEQRES 17 A 364 ARG LEU SER ALA TRP GLU TYR SER TYR ASP GLY LEU ASN SEQRES 18 A 364 VAL LYS LEU ILE ALA ASP ASN ALA ALA ALA PHE VAL MET SEQRES 19 A 364 GLN GLN GLY PHE VAL ASP ALA ILE ILE VAL GLY ALA ASP SEQRES 20 A 364 ARG ILE VAL ALA ASN GLY ASP PHE ALA ASN LYS ILE GLY SEQRES 21 A 364 THR TYR MET LEU ALA VAL LEU ALA ARG GLU HIS GLY ILE SEQRES 22 A 364 PRO PHE PHE ALA VAL ALA PRO LEU SER SER ILE ASP MET SEQRES 23 A 364 GLU LEU LYS SER GLY LYS ASP ILE PRO ILE GLU GLU ARG SEQRES 24 A 364 SER PRO GLU GLU VAL LEU THR CYS GLY GLY CYS ARG ILE SEQRES 25 A 364 ALA PRO ASP VAL PRO VAL TYR ASN PRO ALA PHE ASP VAL SEQRES 26 A 364 THR PRO HIS LYS TYR LEU THR GLY ILE ILE THR ASP ARG SEQRES 27 A 364 GLY VAL VAL TRP PRO PRO PHE LYS ARG ASN LEU LYS LYS SEQRES 28 A 364 LEU PHE GLU VAL ASN LYS SER GLY GLY ASP GLU ALA VAL SEQRES 1 B 364 MET GLU ILE ARG TYR THR PRO LYS GLU LEU THR LYS LEU SEQRES 2 B 364 PRO ARG THR VAL GLU TYR LYS ASN LYS SER VAL TYR MET SEQRES 3 B 364 ILE ASN GLN ARG LEU LEU PRO LYS GLU PHE LYS VAL GLU SEQRES 4 B 364 LYS PHE SER LYS VAL GLU GLU VAL ALA GLU ALA ILE LYS SEQRES 5 B 364 ASN MET THR VAL ARG GLY ALA PRO ALA ILE GLY ALA ALA SEQRES 6 B 364 ALA GLY PHE GLY LEU ALA LEU TYR ALA GLU THR SER LYS SEQRES 7 B 364 ALA LYS THR LYS GLU GLU PHE LEU ASP GLY PHE GLU LYS SEQRES 8 B 364 ALA TYR GLU ILE LEU LYS ASN THR ARG PRO THR ALA VAL SEQRES 9 B 364 ASN LEU PHE TRP ALA LEU ASN ARG ILE LYS LYS LEU VAL SEQRES 10 B 364 GLU GLU HIS SER GLU ASP PRO LEU ASP GLU ILE LYS ARG SEQRES 11 B 364 LEU ILE VAL GLN GLU ALA TYR LYS ILE ALA ASP GLU ASP SEQRES 12 B 364 VAL GLU ALA ASN LEU ARG MET GLY HIS TYR GLY ALA GLU SEQRES 13 B 364 VAL LEU PRO GLU GLY ASN ILE LEU THR HIS CYS ASN ALA SEQRES 14 B 364 GLY SER LEU ALA THR VAL HIS LEU GLY THR VAL GLY SER SEQRES 15 B 364 VAL VAL ARG VAL MET HIS LYS ASP GLY SER LEU LYS LEU SEQRES 16 B 364 LEU TRP LEU ASP GLU THR ARG PRO VAL LEU GLN GLY ALA SEQRES 17 B 364 ARG LEU SER ALA TRP GLU TYR SER TYR ASP GLY LEU ASN SEQRES 18 B 364 VAL LYS LEU ILE ALA ASP ASN ALA ALA ALA PHE VAL MET SEQRES 19 B 364 GLN GLN GLY PHE VAL ASP ALA ILE ILE VAL GLY ALA ASP SEQRES 20 B 364 ARG ILE VAL ALA ASN GLY ASP PHE ALA ASN LYS ILE GLY SEQRES 21 B 364 THR TYR MET LEU ALA VAL LEU ALA ARG GLU HIS GLY ILE SEQRES 22 B 364 PRO PHE PHE ALA VAL ALA PRO LEU SER SER ILE ASP MET SEQRES 23 B 364 GLU LEU LYS SER GLY LYS ASP ILE PRO ILE GLU GLU ARG SEQRES 24 B 364 SER PRO GLU GLU VAL LEU THR CYS GLY GLY CYS ARG ILE SEQRES 25 B 364 ALA PRO ASP VAL PRO VAL TYR ASN PRO ALA PHE ASP VAL SEQRES 26 B 364 THR PRO HIS LYS TYR LEU THR GLY ILE ILE THR ASP ARG SEQRES 27 B 364 GLY VAL VAL TRP PRO PRO PHE LYS ARG ASN LEU LYS LYS SEQRES 28 B 364 LEU PHE GLU VAL ASN LYS SER GLY GLY ASP GLU ALA VAL HET HEZ A 401 8 HET HEZ B 401 8 HET HEZ B 402 8 HET HEZ B 403 8 HETNAM HEZ HEXANE-1,6-DIOL FORMUL 3 HEZ 4(C6 H14 O2) FORMUL 7 HOH *260(H2 O) HELIX 1 AA1 THR A 6 THR A 11 1 6 HELIX 2 AA2 LYS A 43 ASN A 53 1 11 HELIX 3 AA3 GLY A 58 SER A 77 1 20 HELIX 4 AA4 THR A 81 ASN A 98 1 18 HELIX 5 AA5 ALA A 103 HIS A 120 1 18 HELIX 6 AA6 PRO A 124 LEU A 158 1 35 HELIX 7 AA7 GLY A 170 THR A 174 5 5 HELIX 8 AA8 THR A 179 ASP A 190 1 12 HELIX 9 AA9 LEU A 205 LEU A 210 1 6 HELIX 10 AB1 LEU A 210 ASP A 218 1 9 HELIX 11 AB2 ALA A 226 ASN A 228 5 3 HELIX 12 AB3 ALA A 229 GLN A 236 1 8 HELIX 13 AB4 GLY A 260 HIS A 271 1 12 HELIX 14 AB5 PRO A 280 SER A 282 5 3 HELIX 15 AB6 SER A 290 ILE A 294 5 5 HELIX 16 AB7 PRO A 301 LEU A 305 1 5 HELIX 17 AB8 PRO A 327 LEU A 331 5 5 HELIX 18 AB9 PRO A 344 VAL A 355 1 12 HELIX 19 AC1 THR B 6 THR B 11 1 6 HELIX 20 AC2 LYS B 43 ASN B 53 1 11 HELIX 21 AC3 GLY B 58 SER B 77 1 20 HELIX 22 AC4 THR B 81 ASN B 98 1 18 HELIX 23 AC5 ALA B 103 GLU B 119 1 17 HELIX 24 AC6 LEU B 125 LEU B 158 1 34 HELIX 25 AC7 GLY B 170 THR B 174 5 5 HELIX 26 AC8 THR B 179 ASP B 190 1 12 HELIX 27 AC9 LEU B 205 LEU B 210 1 6 HELIX 28 AD1 LEU B 210 ASP B 218 1 9 HELIX 29 AD2 ALA B 226 ASN B 228 5 3 HELIX 30 AD3 ALA B 229 GLN B 236 1 8 HELIX 31 AD4 GLY B 260 HIS B 271 1 12 HELIX 32 AD5 PRO B 280 SER B 282 5 3 HELIX 33 AD6 SER B 290 ILE B 294 5 5 HELIX 34 AD7 PRO B 301 LEU B 305 1 5 HELIX 35 AD8 PRO B 327 LEU B 331 5 5 HELIX 36 AD9 PRO B 344 VAL B 355 1 12 SHEET 1 AA1 3 VAL A 17 LYS A 20 0 SHEET 2 AA1 3 SER A 23 ILE A 27 -1 O TYR A 25 N GLU A 18 SHEET 3 AA1 3 VAL A 38 PHE A 41 -1 O PHE A 41 N VAL A 24 SHEET 1 AA2 7 VAL A 222 ILE A 225 0 SHEET 2 AA2 7 LEU A 193 ASP A 199 1 N LEU A 198 O LYS A 223 SHEET 3 AA2 7 GLY A 161 THR A 165 1 N ILE A 163 O TRP A 197 SHEET 4 AA2 7 ALA A 241 VAL A 244 1 O ILE A 243 N LEU A 164 SHEET 5 AA2 7 PHE A 275 VAL A 278 1 O PHE A 276 N VAL A 244 SHEET 6 AA2 7 GLY A 333 THR A 336 1 O ILE A 335 N ALA A 277 SHEET 7 AA2 7 GLY A 339 VAL A 341 -1 O VAL A 341 N ILE A 334 SHEET 1 AA3 4 ILE A 284 ASP A 285 0 SHEET 2 AA3 4 ARG A 248 VAL A 250 1 N ILE A 249 O ASP A 285 SHEET 3 AA3 4 PHE A 255 LYS A 258 -1 O ALA A 256 N ARG A 248 SHEET 4 AA3 4 PHE A 323 THR A 326 -1 O THR A 326 N PHE A 255 SHEET 1 AA4 2 THR A 306 CYS A 307 0 SHEET 2 AA4 2 CYS A 310 ARG A 311 -1 O CYS A 310 N CYS A 307 SHEET 1 AA5 3 VAL B 17 LYS B 20 0 SHEET 2 AA5 3 SER B 23 ILE B 27 -1 O TYR B 25 N GLU B 18 SHEET 3 AA5 3 VAL B 38 PHE B 41 -1 O PHE B 41 N VAL B 24 SHEET 1 AA6 7 VAL B 222 ILE B 225 0 SHEET 2 AA6 7 LEU B 193 ASP B 199 1 N LEU B 198 O LYS B 223 SHEET 3 AA6 7 GLY B 161 THR B 165 1 N ILE B 163 O TRP B 197 SHEET 4 AA6 7 ALA B 241 VAL B 244 1 O ILE B 243 N LEU B 164 SHEET 5 AA6 7 PHE B 275 VAL B 278 1 O PHE B 276 N ILE B 242 SHEET 6 AA6 7 GLY B 333 THR B 336 1 O ILE B 335 N ALA B 277 SHEET 7 AA6 7 GLY B 339 VAL B 341 -1 O VAL B 341 N ILE B 334 SHEET 1 AA7 4 ILE B 284 ASP B 285 0 SHEET 2 AA7 4 ARG B 248 VAL B 250 1 N ILE B 249 O ASP B 285 SHEET 3 AA7 4 PHE B 255 LYS B 258 -1 O ALA B 256 N ARG B 248 SHEET 4 AA7 4 PHE B 323 THR B 326 -1 O THR B 326 N PHE B 255 SHEET 1 AA8 2 THR B 306 CYS B 307 0 SHEET 2 AA8 2 CYS B 310 ARG B 311 -1 O CYS B 310 N CYS B 307 SSBOND 1 CYS A 307 CYS B 307 1555 1555 2.07 SSBOND 2 CYS A 310 CYS B 310 1555 1555 2.02 CISPEP 1 LEU A 32 PRO A 33 0 4.12 CISPEP 2 ARG A 202 PRO A 203 0 1.03 CISPEP 3 PRO A 343 PRO A 344 0 2.18 CISPEP 4 LEU B 32 PRO B 33 0 3.90 CISPEP 5 ARG B 202 PRO B 203 0 3.25 CISPEP 6 PRO B 343 PRO B 344 0 2.60 SITE 1 AC1 3 THR A 332 TRP A 342 HOH A 560 SITE 1 AC2 2 ASN A 162 TYR B 319 SITE 1 AC3 4 TYR A 319 ASN B 162 LYS B 194 PHE B 238 SITE 1 AC4 4 VAL B 157 THR B 332 TRP B 342 PRO B 343 CRYST1 169.750 169.750 53.690 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005891 0.003401 0.000000 0.00000 SCALE2 0.000000 0.006802 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018625 0.00000