HEADER OXIDOREDUCTASE 18-JUN-18 6A41 TITLE DEHALOGENATION ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEHALOGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOSPIRILLACEAE; SOURCE 3 ORGANISM_TAXID: 41295; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHALOGENATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.YIN,A.Y.YUAN REVDAT 1 19-JUN-19 6A41 0 JRNL AUTH B.YIN,A.Y.YUAN JRNL TITL STRUCTURE OF A NEW DEHALOGENASE AT 1.9 ANGSTROMS RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 18318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 942 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1289 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.1280 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.1820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1822 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.38000 REMARK 3 B22 (A**2) : -1.36000 REMARK 3 B33 (A**2) : -1.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.895 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1861 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1775 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2527 ; 2.208 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4096 ; 1.180 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 243 ; 6.312 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;38.167 ;22.703 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 275 ;13.693 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.411 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 287 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2100 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 379 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 975 ; 1.132 ; 1.181 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 974 ; 1.127 ; 1.181 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1217 ; 1.701 ; 1.762 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1218 ; 1.701 ; 1.762 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 886 ; 2.408 ; 1.551 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 887 ; 2.407 ; 1.551 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1311 ; 3.770 ; 2.174 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2115 ; 5.617 ;15.911 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2081 ; 5.496 ;15.622 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 244 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9576 15.9526 14.7351 REMARK 3 T TENSOR REMARK 3 T11: 0.0107 T22: 0.0070 REMARK 3 T33: 0.0065 T12: 0.0003 REMARK 3 T13: 0.0046 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.2130 L22: 0.3352 REMARK 3 L33: 0.1646 L12: 0.0066 REMARK 3 L13: -0.0142 L23: 0.0606 REMARK 3 S TENSOR REMARK 3 S11: 0.0103 S12: 0.0113 S13: 0.0126 REMARK 3 S21: 0.0345 S22: 0.0180 S23: -0.0090 REMARK 3 S31: -0.0262 S32: 0.0162 S33: -0.0283 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6A41 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1300007765. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18318 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 70.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 50.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE MONOHYDRATE, 0.1M REMARK 280 TRIS PH 8.5, 25% W/V POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.78500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.96300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.78500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.96300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.78500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.96300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.78500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.96300 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 33.94750 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 70.96300 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 33.94750 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 70.96300 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 33.94750 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 70.96300 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 33.94750 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 70.96300 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 33.94750 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 56.78500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 33.94750 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 56.78500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 33.94750 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 56.78500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 33.94750 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 56.78500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 429 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 472 O HOH A 482 2.11 REMARK 500 O HOH A 448 O HOH A 469 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 169 O ILE A 206 3555 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 149 CE1 TYR A 149 CZ -0.087 REMARK 500 ALA A 244 C ALA A 244 O 0.167 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 23 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 169 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 210 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 210 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 227 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ALA A 244 CA - C - O ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 16 -113.55 47.29 REMARK 500 ALA A 109 -50.70 -127.73 REMARK 500 SER A 135 -156.64 -133.06 REMARK 500 ALA A 240 31.94 -147.92 REMARK 500 REMARK 500 REMARK: NULL DBREF 6A41 A 1 244 PDB 6A41 6A41 1 244 SEQRES 1 A 244 MSE LEU LEU LYS ASP ARG VAL ILE LEU ILE THR ASN VAL SEQRES 2 A 244 GLU LYS PHE ALA GLY HIS GLY THR THR ARG ILE ALA LEU SEQRES 3 A 244 ALA GLN GLY ALA THR VAL LEU ALA HIS ASP PRO SER PHE SEQRES 4 A 244 ASP THR PRO SER ALA ARG HIS LYS TYR GLU SER GLN PHE SEQRES 5 A 244 PRO GLY ALA HIS ALA LEU SER ALA VAL GLU PRO ALA ALA SEQRES 6 A 244 MSE VAL GLU LEU ALA LEU LYS ARG HIS GLY HIS ILE ASP SEQRES 7 A 244 ALA LEU VAL ASN ASN ASP ALA TYR PRO ALA LEU LYS ALA SEQRES 8 A 244 PRO LEU GLY GLU ALA ARG ILE GLU ASP PHE ARG ASP ALA SEQRES 9 A 244 LEU GLU VAL MSE ALA VAL ALA PRO PHE ARG LEU THR GLN SEQRES 10 A 244 LEU VAL ALA PRO SER MSE ARG LYS ARG LYS SER GLY ARG SEQRES 11 A 244 ILE VAL PHE VAL SER SER ALA ALA PRO LEU ARG GLY ILE SEQRES 12 A 244 ALA ASN TYR ALA PRO TYR VAL SER ALA ARG ALA ALA GLY SEQRES 13 A 244 ASN GLY LEU VAL SER SER LEU ALA LYS GLU LEU GLY ARG SEQRES 14 A 244 ASP SER ILE THR VAL ASN ALA VAL GLY SER ASN TYR VAL SEQRES 15 A 244 GLU ASN PRO ASP TYR PHE PRO PRO ALA LEU LEU ALA ASN SEQRES 16 A 244 ARG GLU ALA MSE ALA LYS MSE THR ALA GLN ILE PRO LEU SEQRES 17 A 244 GLY ARG LEU GLY LYS SER ASP GLU LEU GLY ALA THR ILE SEQRES 18 A 244 CYS PHE LEU CYS SER ASP GLY ALA GLY PHE ILE THR GLY SEQRES 19 A 244 HIS VAL LEU PRO HIS ALA GLY GLY TRP ALA HET MSE A 1 8 HET MSE A 66 8 HET MSE A 108 8 HET MSE A 123 8 HET MSE A 199 8 HET MSE A 202 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 HOH *183(H2 O) HELIX 1 AA1 ALA A 17 GLN A 28 1 12 HELIX 2 AA2 ASP A 36 ASP A 40 5 5 HELIX 3 AA3 THR A 41 PHE A 52 1 12 HELIX 4 AA4 GLU A 62 GLY A 75 1 14 HELIX 5 AA5 ARG A 97 ALA A 109 1 13 HELIX 6 AA6 ALA A 109 LYS A 127 1 19 HELIX 7 AA7 ALA A 138 ARG A 141 5 4 HELIX 8 AA8 TYR A 146 LEU A 159 1 14 HELIX 9 AA9 LEU A 159 GLY A 168 1 10 HELIX 10 AB1 PRO A 189 ALA A 194 1 6 HELIX 11 AB2 ASN A 195 GLN A 205 1 11 HELIX 12 AB3 LYS A 213 SER A 226 1 14 HELIX 13 AB4 ASP A 227 GLY A 230 5 4 SHEET 1 AA1 7 HIS A 56 ALA A 57 0 SHEET 2 AA1 7 THR A 31 ALA A 34 1 N ALA A 34 O HIS A 56 SHEET 3 AA1 7 VAL A 7 ILE A 10 1 N ILE A 8 O THR A 31 SHEET 4 AA1 7 ALA A 79 ASN A 83 1 O ALA A 79 N LEU A 9 SHEET 5 AA1 7 GLY A 129 SER A 136 1 O VAL A 132 N ASN A 82 SHEET 6 AA1 7 ILE A 172 SER A 179 1 O VAL A 177 N SER A 135 SHEET 7 AA1 7 VAL A 236 HIS A 239 1 O LEU A 237 N ALA A 176 LINK C MSE A 1 N LEU A 2 1555 1555 1.34 LINK C ALA A 65 N MSE A 66 1555 1555 1.35 LINK C MSE A 66 N VAL A 67 1555 1555 1.33 LINK C VAL A 107 N MSE A 108 1555 1555 1.35 LINK C MSE A 108 N ALA A 109 1555 1555 1.33 LINK C SER A 122 N MSE A 123 1555 1555 1.33 LINK C MSE A 123 N ARG A 124 1555 1555 1.35 LINK C ALA A 198 N MSE A 199 1555 1555 1.33 LINK C MSE A 199 N ALA A 200 1555 1555 1.31 LINK C LYS A 201 N MSE A 202 1555 1555 1.32 LINK C MSE A 202 N THR A 203 1555 1555 1.33 CRYST1 67.895 113.570 141.926 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014729 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007046 0.00000 HETATM 1 N MSE A 1 -2.157 34.233 1.740 1.00 38.76 N ANISOU 1 N MSE A 1 5073 4748 4904 22 144 217 N HETATM 2 CA MSE A 1 -2.192 33.691 3.113 1.00 34.54 C ANISOU 2 CA MSE A 1 4524 4215 4384 23 146 192 C HETATM 3 C MSE A 1 -3.023 32.412 3.126 1.00 28.30 C ANISOU 3 C MSE A 1 3716 3448 3589 35 129 185 C HETATM 4 O MSE A 1 -4.189 32.508 3.416 1.00 28.00 O ANISOU 4 O MSE A 1 3673 3403 3563 52 121 190 O HETATM 5 CB MSE A 1 -2.748 34.866 3.951 1.00 39.61 C ANISOU 5 CB MSE A 1 5173 4827 5049 32 153 195 C HETATM 6 CG MSE A 1 -1.877 36.136 3.888 1.00 48.57 C ANISOU 6 CG MSE A 1 6326 5938 6190 18 169 202 C HETATM 7 SE MSE A 1 -0.135 35.620 4.757 1.00 58.92 SE ANISOU 7 SE MSE A 1 7628 7258 7498 -9 182 171 SE HETATM 8 CE MSE A 1 -0.022 37.098 6.126 1.00 58.73 C ANISOU 8 CE MSE A 1 7617 7195 7503 -12 197 160 C