HEADER DNA BINDING PROTEIN 19-JUN-18 6A47 TITLE STRUCTURE OF TREX2 IN COMPLEX WITH A Y STRUCTURED DSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: THREE PRIME REPAIR EXONUCLEASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3'-5' EXONUCLEASE TREX2; COMPND 5 EC: 3.1.11.2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(P*CP*CP*AP*GP*GP*CP*CP*CP*TP*CP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'); COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TREX2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_TAXID: 10090 KEYWDS EXONUCLEASE, DEDDH EXONUCLEASE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.Y.HSIAO REVDAT 3 22-NOV-23 6A47 1 LINK REVDAT 2 26-DEC-18 6A47 1 JRNL REVDAT 1 07-NOV-18 6A47 0 JRNL AUTH H.L.CHENG,C.T.LIN,K.W.HUANG,S.WANG,Y.T.LIN,S.I.TOH,Y.Y.HSIAO JRNL TITL STRUCTURAL INSIGHTS INTO THE DUPLEX DNA PROCESSING OF TREX2 JRNL REF NUCLEIC ACIDS RES. V. 46 12166 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 30357414 JRNL DOI 10.1093/NAR/GKY970 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 49670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.550 REMARK 3 FREE R VALUE TEST SET COUNT : 3750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4569 - 5.6854 0.99 1796 132 0.1574 0.1574 REMARK 3 2 5.6854 - 4.5185 1.00 1739 137 0.1405 0.1568 REMARK 3 3 4.5185 - 3.9490 1.00 1721 151 0.1226 0.1456 REMARK 3 4 3.9490 - 3.5887 1.00 1720 152 0.1459 0.1712 REMARK 3 5 3.5887 - 3.3319 1.00 1709 137 0.1646 0.1819 REMARK 3 6 3.3319 - 3.1357 1.00 1711 136 0.1683 0.2163 REMARK 3 7 3.1357 - 2.9789 1.00 1703 144 0.1851 0.2317 REMARK 3 8 2.9789 - 2.8493 1.00 1662 142 0.1752 0.2197 REMARK 3 9 2.8493 - 2.7397 1.00 1744 137 0.1714 0.1754 REMARK 3 10 2.7397 - 2.6453 1.00 1696 130 0.1701 0.2099 REMARK 3 11 2.6453 - 2.5626 1.00 1703 129 0.1666 0.2008 REMARK 3 12 2.5626 - 2.4894 1.00 1725 153 0.1656 0.2101 REMARK 3 13 2.4894 - 2.4239 1.00 1666 146 0.1694 0.1990 REMARK 3 14 2.4239 - 2.3648 1.00 1684 161 0.1605 0.1868 REMARK 3 15 2.3648 - 2.3111 1.00 1677 127 0.1591 0.2125 REMARK 3 16 2.3111 - 2.2619 1.00 1734 137 0.1650 0.2155 REMARK 3 17 2.2619 - 2.2167 1.00 1659 151 0.1825 0.2201 REMARK 3 18 2.2167 - 2.1748 1.00 1672 141 0.1787 0.2212 REMARK 3 19 2.1748 - 2.1360 1.00 1684 119 0.1767 0.2088 REMARK 3 20 2.1360 - 2.0998 1.00 1687 142 0.1824 0.2332 REMARK 3 21 2.0998 - 2.0660 1.00 1712 155 0.1954 0.2169 REMARK 3 22 2.0660 - 2.0342 1.00 1673 137 0.1914 0.2567 REMARK 3 23 2.0342 - 2.0043 1.00 1692 140 0.2010 0.2384 REMARK 3 24 2.0043 - 1.9761 1.00 1698 106 0.2100 0.2645 REMARK 3 25 1.9761 - 1.9494 1.00 1714 134 0.2214 0.2527 REMARK 3 26 1.9494 - 1.9240 1.00 1653 129 0.2404 0.2733 REMARK 3 27 1.9240 - 1.9000 0.99 1686 145 0.2682 0.3148 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4371 REMARK 3 ANGLE : 0.956 6086 REMARK 3 CHIRALITY : 0.037 683 REMARK 3 PLANARITY : 0.005 667 REMARK 3 DIHEDRAL : 19.039 1657 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 11.1356 -25.8473 -20.3281 REMARK 3 T TENSOR REMARK 3 T11: 0.1983 T22: 0.1171 REMARK 3 T33: 0.1745 T12: -0.0274 REMARK 3 T13: 0.0186 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.4861 L22: 0.9421 REMARK 3 L33: 1.8761 L12: -0.0893 REMARK 3 L13: 0.3233 L23: -0.0444 REMARK 3 S TENSOR REMARK 3 S11: 0.0198 S12: -0.0584 S13: -0.0328 REMARK 3 S21: -0.0085 S22: 0.0285 S23: -0.0491 REMARK 3 S31: 0.0858 S32: -0.1404 S33: -0.0411 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6A47 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1300008131. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50026 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 33.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : 0.53100 REMARK 200 FOR SHELL : 2.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1Y97 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE TRIBASIC DIHYDRATE REMARK 280 PH 5.0, 30%(V/V) POLYETHYLENE GLYCOL MONOMETHYL ETHER 550, D-(+)- REMARK 280 GLUCOSE MONOHYDRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.83300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.20200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.83300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.20200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 553 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 161 REMARK 465 THR A 162 REMARK 465 ARG A 163 REMARK 465 ALA A 164 REMARK 465 GLN A 165 REMARK 465 GLY A 166 REMARK 465 PRO A 232 REMARK 465 SER A 233 REMARK 465 LEU A 234 REMARK 465 GLU A 235 REMARK 465 ALA A 236 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 PRO B 4 REMARK 465 HIS B 160 REMARK 465 GLY B 161 REMARK 465 THR B 162 REMARK 465 ARG B 163 REMARK 465 ALA B 164 REMARK 465 GLN B 165 REMARK 465 ALA B 186 REMARK 465 ALA B 187 REMARK 465 HIS B 188 REMARK 465 GLY B 231 REMARK 465 PRO B 232 REMARK 465 SER B 233 REMARK 465 LEU B 234 REMARK 465 GLU B 235 REMARK 465 ALA B 236 REMARK 465 DT C 1 REMARK 465 DG C 2 REMARK 465 DT C 14 REMARK 465 DT C 15 REMARK 465 DT D 1 REMARK 465 DG D 2 REMARK 465 DC D 12 REMARK 465 DT D 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 169 HH22 ARG A 178 1.54 REMARK 500 N SER B 189 O HOH B 401 2.18 REMARK 500 O HOH A 504 O HOH A 505 2.18 REMARK 500 O SER A 169 NH2 ARG A 178 2.19 REMARK 500 OE1 GLU A 44 O HOH A 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT D 15 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 122 -81.71 -132.29 REMARK 500 TYR B 122 -75.62 -133.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 14 OD2 REMARK 620 2 GLU A 16 OE2 75.3 REMARK 620 3 ASP A 193 OD2 110.3 113.3 REMARK 620 4 DT C 23 OP1 112.5 126.3 112.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 14 OD1 REMARK 620 2 HOH A 414 O 96.5 REMARK 620 3 HOH A 437 O 87.8 90.4 REMARK 620 4 HOH A 502 O 95.3 86.0 175.5 REMARK 620 5 DT C 22 O3' 157.1 105.2 84.9 93.3 REMARK 620 6 DT C 23 OP1 101.0 162.5 91.1 91.4 57.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 29 OE2 REMARK 620 2 SER A 189 OG 107.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 14 OD2 REMARK 620 2 GLU B 16 OE2 70.7 REMARK 620 3 ASP B 193 OD2 104.7 117.2 REMARK 620 4 DT D 23 OP1 110.2 135.3 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 14 OD1 REMARK 620 2 HOH B 416 O 99.3 REMARK 620 3 HOH B 448 O 90.4 85.7 REMARK 620 4 HOH B 526 O 89.7 85.0 170.6 REMARK 620 5 DT D 22 O3' 158.2 102.3 88.4 94.9 REMARK 620 6 DT D 23 OP1 99.6 160.9 96.4 92.8 58.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 101 DBREF 6A47 A 1 236 UNP Q9R1A9 TREX2_MOUSE 1 236 DBREF 6A47 B 1 236 UNP Q9R1A9 TREX2_MOUSE 1 236 DBREF 6A47 C 1 23 PDB 6A47 6A47 1 23 DBREF 6A47 D 1 23 PDB 6A47 6A47 1 23 SEQADV 6A47 MET A -19 UNP Q9R1A9 INITIATING METHIONINE SEQADV 6A47 GLY A -18 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 SER A -17 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 SER A -16 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 HIS A -15 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 HIS A -14 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 HIS A -13 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 HIS A -12 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 HIS A -11 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 HIS A -10 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 SER A -9 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 SER A -8 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 GLY A -7 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 LEU A -6 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 VAL A -5 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 PRO A -4 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 ARG A -3 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 GLY A -2 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 SER A -1 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 HIS A 0 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 MET B -19 UNP Q9R1A9 INITIATING METHIONINE SEQADV 6A47 GLY B -18 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 SER B -17 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 SER B -16 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 HIS B -15 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 HIS B -14 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 HIS B -13 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 HIS B -12 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 HIS B -11 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 HIS B -10 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 SER B -9 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 SER B -8 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 GLY B -7 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 LEU B -6 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 VAL B -5 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 PRO B -4 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 ARG B -3 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 GLY B -2 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 SER B -1 UNP Q9R1A9 EXPRESSION TAG SEQADV 6A47 HIS B 0 UNP Q9R1A9 EXPRESSION TAG SEQRES 1 A 256 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 256 LEU VAL PRO ARG GLY SER HIS MET SER GLU PRO PRO ARG SEQRES 3 A 256 ALA GLU THR PHE VAL PHE LEU ASP LEU GLU ALA THR GLY SEQRES 4 A 256 LEU PRO ASN MET ASP PRO GLU ILE ALA GLU ILE SER LEU SEQRES 5 A 256 PHE ALA VAL HIS ARG SER SER LEU GLU ASN PRO GLU ARG SEQRES 6 A 256 ASP ASP SER GLY SER LEU VAL LEU PRO ARG VAL LEU ASP SEQRES 7 A 256 LYS LEU THR LEU CYS MET CYS PRO GLU ARG PRO PHE THR SEQRES 8 A 256 ALA LYS ALA SER GLU ILE THR GLY LEU SER SER GLU SER SEQRES 9 A 256 LEU MET HIS CYS GLY LYS ALA GLY PHE ASN GLY ALA VAL SEQRES 10 A 256 VAL ARG THR LEU GLN GLY PHE LEU SER ARG GLN GLU GLY SEQRES 11 A 256 PRO ILE CYS LEU VAL ALA HIS ASN GLY PHE ASP TYR ASP SEQRES 12 A 256 PHE PRO LEU LEU CYS THR GLU LEU GLN ARG LEU GLY ALA SEQRES 13 A 256 HIS LEU PRO GLN ASP THR VAL CYS LEU ASP THR LEU PRO SEQRES 14 A 256 ALA LEU ARG GLY LEU ASP ARG ALA HIS SER HIS GLY THR SEQRES 15 A 256 ARG ALA GLN GLY ARG LYS SER TYR SER LEU ALA SER LEU SEQRES 16 A 256 PHE HIS ARG TYR PHE GLN ALA GLU PRO SER ALA ALA HIS SEQRES 17 A 256 SER ALA GLU GLY ASP VAL HIS THR LEU LEU LEU ILE PHE SEQRES 18 A 256 LEU HIS ARG ALA PRO GLU LEU LEU ALA TRP ALA ASP GLU SEQRES 19 A 256 GLN ALA ARG SER TRP ALA HIS ILE GLU PRO MET TYR VAL SEQRES 20 A 256 PRO PRO ASP GLY PRO SER LEU GLU ALA SEQRES 1 B 256 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 256 LEU VAL PRO ARG GLY SER HIS MET SER GLU PRO PRO ARG SEQRES 3 B 256 ALA GLU THR PHE VAL PHE LEU ASP LEU GLU ALA THR GLY SEQRES 4 B 256 LEU PRO ASN MET ASP PRO GLU ILE ALA GLU ILE SER LEU SEQRES 5 B 256 PHE ALA VAL HIS ARG SER SER LEU GLU ASN PRO GLU ARG SEQRES 6 B 256 ASP ASP SER GLY SER LEU VAL LEU PRO ARG VAL LEU ASP SEQRES 7 B 256 LYS LEU THR LEU CYS MET CYS PRO GLU ARG PRO PHE THR SEQRES 8 B 256 ALA LYS ALA SER GLU ILE THR GLY LEU SER SER GLU SER SEQRES 9 B 256 LEU MET HIS CYS GLY LYS ALA GLY PHE ASN GLY ALA VAL SEQRES 10 B 256 VAL ARG THR LEU GLN GLY PHE LEU SER ARG GLN GLU GLY SEQRES 11 B 256 PRO ILE CYS LEU VAL ALA HIS ASN GLY PHE ASP TYR ASP SEQRES 12 B 256 PHE PRO LEU LEU CYS THR GLU LEU GLN ARG LEU GLY ALA SEQRES 13 B 256 HIS LEU PRO GLN ASP THR VAL CYS LEU ASP THR LEU PRO SEQRES 14 B 256 ALA LEU ARG GLY LEU ASP ARG ALA HIS SER HIS GLY THR SEQRES 15 B 256 ARG ALA GLN GLY ARG LYS SER TYR SER LEU ALA SER LEU SEQRES 16 B 256 PHE HIS ARG TYR PHE GLN ALA GLU PRO SER ALA ALA HIS SEQRES 17 B 256 SER ALA GLU GLY ASP VAL HIS THR LEU LEU LEU ILE PHE SEQRES 18 B 256 LEU HIS ARG ALA PRO GLU LEU LEU ALA TRP ALA ASP GLU SEQRES 19 B 256 GLN ALA ARG SER TRP ALA HIS ILE GLU PRO MET TYR VAL SEQRES 20 B 256 PRO PRO ASP GLY PRO SER LEU GLU ALA SEQRES 1 C 23 DT DG DC DC DA DG DG DC DC DC DT DC DT SEQRES 2 C 23 DT DT DA DG DG DG DC DC DT DT SEQRES 1 D 23 DT DG DC DC DA DG DG DC DC DC DT DC DT SEQRES 2 D 23 DT DT DA DG DG DG DC DC DT DT HET MG A 301 1 HET NA A 302 1 HET MG B 301 1 HET MG C 101 1 HET MG D 101 1 HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 5 MG 4(MG 2+) FORMUL 6 NA NA 1+ FORMUL 10 HOH *314(H2 O) HELIX 1 AA1 LEU A 20 ASP A 24 5 5 HELIX 2 AA2 ARG A 37 ASN A 42 1 6 HELIX 3 AA3 THR A 71 GLY A 79 1 9 HELIX 4 AA4 SER A 81 CYS A 88 1 8 HELIX 5 AA5 ASN A 94 ARG A 107 1 14 HELIX 6 AA6 TYR A 122 ARG A 133 1 12 HELIX 7 AA7 THR A 147 HIS A 158 1 12 HELIX 8 AA8 SER A 171 GLN A 181 1 11 HELIX 9 AA9 SER A 189 ARG A 204 1 16 HELIX 10 AB1 ARG A 204 ALA A 216 1 13 HELIX 11 AB2 ALA A 220 ILE A 222 5 3 HELIX 12 AB3 LEU B 20 ASP B 24 5 5 HELIX 13 AB4 ARG B 37 GLU B 41 1 5 HELIX 14 AB5 THR B 71 GLY B 79 1 9 HELIX 15 AB6 SER B 81 CYS B 88 1 8 HELIX 16 AB7 ASN B 94 ARG B 107 1 14 HELIX 17 AB8 TYR B 122 LEU B 134 1 13 HELIX 18 AB9 ASP B 146 SER B 159 1 14 HELIX 19 AC1 SER B 171 GLN B 181 1 11 HELIX 20 AC2 ALA B 190 ARG B 204 1 15 HELIX 21 AC3 ARG B 204 ALA B 216 1 13 HELIX 22 AC4 ALA B 220 ILE B 222 5 3 SHEET 1 AA112 ARG A 217 SER A 218 0 SHEET 2 AA112 VAL A 143 ASP A 146 -1 N CYS A 144 O ARG A 217 SHEET 3 AA112 ILE A 112 ALA A 116 1 N LEU A 114 O LEU A 145 SHEET 4 AA112 THR A 9 ALA A 17 1 N LEU A 13 O VAL A 115 SHEET 5 AA112 ILE A 27 HIS A 36 -1 O VAL A 35 N PHE A 10 SHEET 6 AA112 LEU A 57 CYS A 63 -1 O ASP A 58 N ALA A 34 SHEET 7 AA112 ASP B 58 CYS B 63 -1 O THR B 61 N LYS A 59 SHEET 8 AA112 ILE B 27 HIS B 36 -1 N ALA B 34 O ASP B 58 SHEET 9 AA112 THR B 9 ALA B 17 -1 N GLU B 16 O ALA B 28 SHEET 10 AA112 ILE B 112 VAL B 115 1 O VAL B 115 N LEU B 13 SHEET 11 AA112 VAL B 143 LEU B 145 1 O LEU B 145 N LEU B 114 SHEET 12 AA112 ARG B 217 SER B 218 -1 O ARG B 217 N CYS B 144 SHEET 1 AA2 2 GLU B 44 ARG B 45 0 SHEET 2 AA2 2 LEU B 51 VAL B 52 -1 O VAL B 52 N GLU B 44 LINK OD2 ASP A 14 MG MG A 301 1555 1555 2.58 LINK OD1 ASP A 14 MG MG C 101 1555 1555 2.25 LINK OE2 GLU A 16 MG MG A 301 1555 1555 2.16 LINK OE2 GLU A 29 NA NA A 302 1555 1555 2.97 LINK OG SER A 189 NA NA A 302 1555 1555 2.36 LINK OD2 ASP A 193 MG MG A 301 1555 1555 2.39 LINK MG MG A 301 OP1 DT C 23 1555 1555 2.44 LINK O HOH A 414 MG MG C 101 1555 1555 2.36 LINK O HOH A 437 MG MG C 101 1555 1555 2.34 LINK O HOH A 502 MG MG C 101 1555 1555 2.38 LINK OD2 ASP B 14 MG MG B 301 1555 1555 2.68 LINK OD1 ASP B 14 MG MG D 101 1555 1555 2.30 LINK OE2 GLU B 16 MG MG B 301 1555 1555 2.04 LINK OD2 ASP B 193 MG MG B 301 1555 1555 2.37 LINK MG MG B 301 OP1 DT D 23 1555 1555 2.39 LINK O HOH B 416 MG MG D 101 1555 1555 2.33 LINK O HOH B 448 MG MG D 101 1555 1555 2.32 LINK O HOH B 526 MG MG D 101 1555 1555 2.46 LINK O3' DT C 22 MG MG C 101 1555 1555 2.65 LINK OP1 DT C 23 MG MG C 101 1555 1555 2.43 LINK O3' DT D 22 MG MG D 101 1555 1555 2.62 LINK OP1 DT D 23 MG MG D 101 1555 1555 2.34 CISPEP 1 GLY A 110 PRO A 111 0 -1.97 CISPEP 2 GLY B 110 PRO B 111 0 -1.65 SITE 1 AC1 4 ASP A 14 GLU A 16 ASP A 193 DT C 23 SITE 1 AC2 4 GLU A 29 SER A 189 ALA A 190 GLU A 191 SITE 1 AC3 4 ASP B 14 GLU B 16 ASP B 193 DT D 23 SITE 1 AC4 6 ASP A 14 HOH A 414 HOH A 437 HOH A 502 SITE 2 AC4 6 DT C 22 DT C 23 SITE 1 AC5 6 ASP B 14 HOH B 416 HOH B 448 HOH B 526 SITE 2 AC5 6 DT D 22 DT D 23 CRYST1 145.666 48.404 90.593 90.00 97.36 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006865 0.000000 0.000886 0.00000 SCALE2 0.000000 0.020659 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011130 0.00000