HEADER DNA BINDING PROTEIN/DNA 22-JUN-18 6A57 TITLE STRUCTURE OF HISTONE DEMETHYLASE REF6 COMPLEXED WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE REF6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IG GAMMA-1 CHAIN C REGION; COMPND 5 SYNONYM: JUMONJI DOMAIN-CONTAINING PROTEIN 12,LYSINE-SPECIFIC HISTONE COMPND 6 DEMETHYLASE REF6,PROTEIN RELATIVE OF EARLY FLOWERING 6; COMPND 7 EC: 1.14.11.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*CP*TP*TP*TP*CP*TP*CP*TP*GP*TP*TP*TP*TP*GP*TP*C)- COMPND 11 3'); COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'-D(*GP*GP*AP*CP*AP*AP*AP*AP*CP*AP*GP*AP*GP*AP*AP*A)- COMPND 16 3'); COMPND 17 CHAIN: C; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: REF6, JMJ12, PKDM9A, AT3G48430, T29H11_50; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 11 ORGANISM_TAXID: 3702; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 15 ORGANISM_TAXID: 3702 KEYWDS COMPLEX, HISTONE DEMETHYLASE REF6, DNA, ZINC FINGER, DNA BINDING KEYWDS 2 PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.TIAN,Z.CHEN REVDAT 3 27-MAR-24 6A57 1 REMARK REVDAT 2 08-JUL-20 6A57 1 JRNL REVDAT 1 26-JUN-19 6A57 0 JRNL AUTH Z.TIAN,X.LI,M.LI,W.WU,M.ZHANG,C.TANG,Z.LI,Y.LIU,Z.CHEN, JRNL AUTH 2 M.YANG,L.MA,C.CABA,Y.TONG,H.M.LAM,S.DAI,Z.CHEN JRNL TITL CRYSTAL STRUCTURES OF REF6 AND ITS COMPLEX WITH DNA REVEAL JRNL TITL 2 DIVERSE RECOGNITION MECHANISMS. JRNL REF CELL DISCOV V. 6 17 2020 JRNL REFN ESSN 2056-5968 JRNL PMID 32257379 JRNL DOI 10.1038/S41421-020-0150-6 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 10516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 596 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 717 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.4280 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1001 REMARK 3 NUCLEIC ACID ATOMS : 650 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.428 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.288 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.194 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.777 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1766 ; 0.006 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): 1238 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2518 ; 1.099 ; 1.584 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2876 ; 1.179 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 130 ; 6.123 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 48 ;36.666 ;22.083 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 156 ;14.969 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;21.486 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 239 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1556 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 385 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 523 ; 1.980 ; 6.369 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 522 ; 1.976 ; 6.365 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 652 ; 3.418 ; 9.540 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 653 ; 3.415 ; 9.544 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1242 ; 2.100 ; 4.647 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1243 ; 2.099 ; 4.646 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1866 ; 3.605 ; 6.972 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2142 ; 5.761 ;52.290 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2134 ; 5.751 ;52.279 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6A57 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1300008173. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11190 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL2MAP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.27000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.63500 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.63500 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.27000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 24.63500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1221 REMARK 465 SER A 1222 REMARK 465 VAL A 1223 REMARK 465 GLU A 1224 REMARK 465 LYS A 1356 REMARK 465 THR A 1357 REMARK 465 ASN A 1358 REMARK 465 LYS A 1359 REMARK 465 ARG A 1360 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1225 CG CD OE1 OE2 REMARK 470 LYS A1226 CG CD CE NZ REMARK 470 GLU A1227 CG CD OE1 OE2 REMARK 470 GLU A1230 CG CD OE1 OE2 REMARK 470 GLU A1234 CG CD OE1 OE2 REMARK 470 GLU A1236 CG CD OE1 OE2 REMARK 470 GLU A1237 CG CD OE1 OE2 REMARK 470 GLU A1239 CG CD OE1 OE2 REMARK 470 CYS A1240 SG REMARK 470 GLN A1244 NE2 REMARK 470 GLU A1248 CG CD OE1 OE2 REMARK 470 THR A1251 OG1 CG2 REMARK 470 MET A1252 CG SD CE REMARK 470 SER A1253 OG REMARK 470 PHE A1254 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A1256 OG REMARK 470 GLU A1257 CG CD OE1 OE2 REMARK 470 LYS A1258 CG CD CE NZ REMARK 470 LEU A1260 CD1 CD2 REMARK 470 MET A1261 CG SD CE REMARK 470 LYS A1264 CG CD CE NZ REMARK 470 LYS A1281 CG CD CE NZ REMARK 470 SER A1291 OG REMARK 470 LYS A1301 CG CD CE NZ REMARK 470 ASP A1332 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A1236 -92.19 -128.24 REMARK 500 GLU A1237 99.93 -177.22 REMARK 500 CYS A1240 54.26 -171.27 REMARK 500 ALA A1241 -148.52 63.76 REMARK 500 TYR A1243 -89.36 -152.18 REMARK 500 ASN A1246 -79.51 -139.17 REMARK 500 GLU A1248 79.17 60.57 REMARK 500 SER A1255 49.42 -105.23 REMARK 500 CYS A1273 -87.69 -93.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1245 SG REMARK 620 2 CYS A1250 SG 108.2 REMARK 620 3 HIS A1263 NE2 93.6 107.7 REMARK 620 4 HIS A1280 NE2 116.8 125.1 99.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1268 SG REMARK 620 2 CYS A1273 SG 109.2 REMARK 620 3 HIS A1286 NE2 103.3 110.1 REMARK 620 4 HIS A1290 NE2 109.4 120.4 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1298 SG REMARK 620 2 CYS A1303 SG 118.6 REMARK 620 3 HIS A1316 NE2 101.8 114.1 REMARK 620 4 HIS A1320 NE2 110.6 104.2 107.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1328 SG REMARK 620 2 CYS A1333 SG 105.5 REMARK 620 3 HIS A1346 NE2 115.9 107.7 REMARK 620 4 HIS A1352 ND1 115.7 113.3 98.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 101 DBREF 6A57 A 1223 1360 UNP Q9STM3 REF6_ARATH 1223 1360 DBREF 6A57 B 1 16 PDB 6A57 6A57 1 16 DBREF 6A57 C 21 36 PDB 6A57 6A57 21 36 SEQADV 6A57 GLY A 1221 UNP Q9STM3 EXPRESSION TAG SEQADV 6A57 SER A 1222 UNP Q9STM3 EXPRESSION TAG SEQRES 1 A 140 GLY SER VAL GLU GLU LYS GLU GLU GLU GLU GLU GLU GLU SEQRES 2 A 140 GLU ASN GLU GLU GLU GLU CYS ALA ALA TYR GLN CYS ASN SEQRES 3 A 140 MET GLU GLY CYS THR MET SER PHE SER SER GLU LYS GLN SEQRES 4 A 140 LEU MET LEU HIS LYS ARG ASN ILE CYS PRO ILE LYS GLY SEQRES 5 A 140 CYS GLY LYS ASN PHE PHE SER HIS LYS TYR LEU VAL GLN SEQRES 6 A 140 HIS GLN ARG VAL HIS SER ASP ASP ARG PRO LEU LYS CYS SEQRES 7 A 140 PRO TRP LYS GLY CYS LYS MET THR PHE LYS TRP ALA TRP SEQRES 8 A 140 SER ARG THR GLU HIS ILE ARG VAL HIS THR GLY ALA ARG SEQRES 9 A 140 PRO TYR VAL CYS ALA GLU PRO ASP CYS GLY GLN THR PHE SEQRES 10 A 140 ARG PHE VAL SER ASP PHE SER ARG HIS LYS ARG LYS THR SEQRES 11 A 140 GLY HIS SER VAL LYS LYS THR ASN LYS ARG SEQRES 1 B 16 DC DT DT DT DC DT DC DT DG DT DT DT DT SEQRES 2 B 16 DG DT DC SEQRES 1 C 16 DG DG DA DC DA DA DA DA DC DA DG DA DG SEQRES 2 C 16 DA DA DA HET ZN A1401 1 HET ZN A1402 1 HET ZN A1403 1 HET ZN A1404 1 HET GOL C 101 6 HET GOL C 102 6 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 ZN 4(ZN 2+) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 10 HOH *79(H2 O) HELIX 1 AA1 SER A 1256 ARG A 1265 1 10 HELIX 2 AA2 SER A 1279 GLN A 1287 1 9 HELIX 3 AA3 ARG A 1288 HIS A 1290 5 3 HELIX 4 AA4 TRP A 1309 GLY A 1322 1 14 HELIX 5 AA5 PHE A 1339 GLY A 1351 1 13 SHEET 1 AA1 2 LEU A1296 LYS A1297 0 SHEET 2 AA1 2 THR A1306 PHE A1307 -1 O PHE A1307 N LEU A1296 SHEET 1 AA2 2 TYR A1326 VAL A1327 0 SHEET 2 AA2 2 THR A1336 PHE A1337 -1 O PHE A1337 N TYR A1326 LINK SG CYS A1245 ZN ZN A1401 1555 1555 2.74 LINK SG CYS A1250 ZN ZN A1401 1555 1555 2.05 LINK NE2 HIS A1263 ZN ZN A1401 1555 1555 1.95 LINK SG CYS A1268 ZN ZN A1402 1555 1555 2.32 LINK SG CYS A1273 ZN ZN A1402 1555 1555 2.28 LINK NE2 HIS A1280 ZN ZN A1401 1555 1555 2.10 LINK NE2 HIS A1286 ZN ZN A1402 1555 1555 2.03 LINK NE2 HIS A1290 ZN ZN A1402 1555 1555 2.00 LINK SG CYS A1298 ZN ZN A1403 1555 1555 2.21 LINK SG CYS A1303 ZN ZN A1403 1555 1555 2.20 LINK NE2 HIS A1316 ZN ZN A1403 1555 1555 1.99 LINK NE2 HIS A1320 ZN ZN A1403 1555 1555 2.06 LINK SG CYS A1328 ZN ZN A1404 1555 1555 2.33 LINK SG CYS A1333 ZN ZN A1404 1555 1555 2.28 LINK NE2 HIS A1346 ZN ZN A1404 1555 1555 2.02 LINK ND1 HIS A1352 ZN ZN A1404 1555 1555 2.10 SITE 1 AC1 4 CYS A1245 CYS A1250 HIS A1263 HIS A1280 SITE 1 AC2 4 CYS A1268 CYS A1273 HIS A1286 HIS A1290 SITE 1 AC3 4 CYS A1298 CYS A1303 HIS A1316 HIS A1320 SITE 1 AC4 4 CYS A1328 CYS A1333 HIS A1346 HIS A1352 SITE 1 AC5 3 HIS A1290 ASP A1292 DG C 33 CRYST1 96.087 96.087 73.905 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010407 0.006009 0.000000 0.00000 SCALE2 0.000000 0.012017 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013531 0.00000