HEADER GENE REGULATION 24-JUN-18 6A5K TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA SUVH6 IN COMPLEX WITH SAM, TITLE 2 FORM 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC COMPND 3 SUVH6; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: HISTONE H3-K9 METHYLTRANSFERASE 6,H3-K9-HMTASE 6,PROTEIN SET COMPND 6 DOMAIN GROUP 23,SUPPRESSOR OF VARIEGATION 3-9 HOMOLOG PROTEIN 6, COMPND 7 SU(VAR)3-9 HOMOLOG PROTEIN 6; COMPND 8 EC: 2.1.1.43; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: SUVH6, SDG23, SET23, AT2G22740, T9I22.18; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-SUMO KEYWDS SRA, SET, HISTONE METHYLTRANSFERASE, DNA METHYLATION, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR X.LI,J.DU REVDAT 3 26-SEP-18 6A5K 1 JRNL REVDAT 2 19-SEP-18 6A5K 1 JRNL REVDAT 1 29-AUG-18 6A5K 0 JRNL AUTH X.LI,C.J.HARRIS,Z.ZHONG,W.CHEN,R.LIU,B.JIA,Z.WANG,S.LI, JRNL AUTH 2 S.E.JACOBSEN,J.DU JRNL TITL MECHANISTIC INSIGHTS INTO PLANT SUVH FAMILY H3K9 JRNL TITL 2 METHYLTRANSFERASES AND THEIR BINDING TO CONTEXT-BIASED JRNL TITL 3 NON-CG DNA METHYLATION. JRNL REF PROC. NATL. ACAD. SCI. V. 115 E8793 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30150382 JRNL DOI 10.1073/PNAS.1809841115 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 41533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8930 - 5.7663 0.98 2717 147 0.2198 0.2528 REMARK 3 2 5.7663 - 4.5780 1.00 2736 150 0.1857 0.1903 REMARK 3 3 4.5780 - 3.9997 1.00 2711 161 0.1499 0.1775 REMARK 3 4 3.9997 - 3.6341 1.00 2802 125 0.1577 0.1826 REMARK 3 5 3.6341 - 3.3737 1.00 2747 126 0.1603 0.1818 REMARK 3 6 3.3737 - 3.1749 1.00 2727 152 0.1666 0.2087 REMARK 3 7 3.1749 - 3.0159 1.00 2735 171 0.1777 0.1906 REMARK 3 8 3.0159 - 2.8846 1.00 2750 153 0.1821 0.1912 REMARK 3 9 2.8846 - 2.7736 1.00 2730 134 0.1841 0.2172 REMARK 3 10 2.7736 - 2.6779 1.00 2736 142 0.1822 0.2073 REMARK 3 11 2.6779 - 2.5942 1.00 2795 136 0.1762 0.2230 REMARK 3 12 2.5942 - 2.5200 1.00 2730 167 0.1930 0.2156 REMARK 3 13 2.5200 - 2.4537 1.00 2671 170 0.1778 0.2263 REMARK 3 14 2.4537 - 2.3938 1.00 2764 148 0.1899 0.2718 REMARK 3 15 2.3938 - 2.3394 1.00 2759 120 0.1938 0.1949 REMARK 3 16 2.3394 - 2.2896 1.00 2769 142 0.1899 0.2652 REMARK 3 17 2.2896 - 2.2438 1.00 2711 134 0.2019 0.2416 REMARK 3 18 2.2438 - 2.2015 1.00 2770 146 0.1871 0.2373 REMARK 3 19 2.2015 - 2.1621 1.00 2691 170 0.1923 0.1891 REMARK 3 20 2.1621 - 2.1255 1.00 2791 139 0.1910 0.2239 REMARK 3 21 2.1255 - 2.0912 1.00 2720 152 0.1959 0.2234 REMARK 3 22 2.0912 - 2.0590 1.00 2763 153 0.2019 0.2563 REMARK 3 23 2.0590 - 2.0288 1.00 2697 144 0.2054 0.2493 REMARK 3 24 2.0288 - 2.0002 0.99 2790 137 0.2171 0.2584 REMARK 3 25 2.0002 - 1.9731 0.96 2655 136 0.2148 0.2187 REMARK 3 26 1.9731 - 1.9475 0.88 2382 135 0.2274 0.2635 REMARK 3 27 1.9475 - 1.9232 0.80 2223 102 0.2393 0.3206 REMARK 3 28 1.9232 - 1.9000 0.66 1834 84 0.2456 0.2937 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3780 REMARK 3 ANGLE : 0.945 5091 REMARK 3 CHIRALITY : 0.038 547 REMARK 3 PLANARITY : 0.003 657 REMARK 3 DIHEDRAL : 15.419 1439 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5493 43.7999 27.8461 REMARK 3 T TENSOR REMARK 3 T11: 0.1949 T22: 0.2372 REMARK 3 T33: 0.1353 T12: 0.0276 REMARK 3 T13: 0.0133 T23: 0.0651 REMARK 3 L TENSOR REMARK 3 L11: 2.2795 L22: 1.2366 REMARK 3 L33: 1.7240 L12: -0.3700 REMARK 3 L13: 0.6622 L23: 0.1683 REMARK 3 S TENSOR REMARK 3 S11: -0.0912 S12: 0.5458 S13: 0.2666 REMARK 3 S21: -0.2202 S22: -0.0410 S23: -0.2082 REMARK 3 S31: -0.1311 S32: 0.2888 S33: 0.1082 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 418 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9525 44.2023 25.0745 REMARK 3 T TENSOR REMARK 3 T11: 0.2219 T22: 0.1513 REMARK 3 T33: 0.1885 T12: 0.0558 REMARK 3 T13: -0.0505 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 2.3000 L22: 1.2159 REMARK 3 L33: 0.9819 L12: -1.0058 REMARK 3 L13: 0.5404 L23: -0.3447 REMARK 3 S TENSOR REMARK 3 S11: 0.1144 S12: 0.3338 S13: -0.0520 REMARK 3 S21: -0.2646 S22: -0.1337 S23: 0.2635 REMARK 3 S31: -0.0434 S32: 0.0568 S33: 0.0161 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 419 THROUGH 498 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4435 50.3725 31.3278 REMARK 3 T TENSOR REMARK 3 T11: 0.1535 T22: 0.0954 REMARK 3 T33: 0.2098 T12: 0.0534 REMARK 3 T13: -0.0211 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 2.1004 L22: 1.0995 REMARK 3 L33: 1.3713 L12: -0.9085 REMARK 3 L13: 0.6797 L23: -0.7543 REMARK 3 S TENSOR REMARK 3 S11: 0.0577 S12: -0.0368 S13: -0.0323 REMARK 3 S21: -0.0534 S22: 0.0499 S23: 0.1598 REMARK 3 S31: -0.1182 S32: -0.1459 S33: 0.0226 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 499 THROUGH 537 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1103 48.8810 63.4149 REMARK 3 T TENSOR REMARK 3 T11: 0.3115 T22: 0.4067 REMARK 3 T33: 0.2048 T12: 0.2022 REMARK 3 T13: 0.0067 T23: -0.2939 REMARK 3 L TENSOR REMARK 3 L11: 2.7319 L22: 1.0657 REMARK 3 L33: 1.3837 L12: 0.6422 REMARK 3 L13: -0.1641 L23: -0.1678 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: -0.9166 S13: 1.0131 REMARK 3 S21: 0.7758 S22: -0.1815 S23: 0.2153 REMARK 3 S31: -0.6200 S32: -0.5022 S33: 0.0313 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 538 THROUGH 560 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.5932 48.2368 54.4970 REMARK 3 T TENSOR REMARK 3 T11: 0.2496 T22: 0.1720 REMARK 3 T33: 0.4972 T12: -0.2583 REMARK 3 T13: -0.1342 T23: 0.1283 REMARK 3 L TENSOR REMARK 3 L11: 2.7506 L22: 1.2753 REMARK 3 L33: 0.0597 L12: -1.2257 REMARK 3 L13: -0.2420 L23: 0.2399 REMARK 3 S TENSOR REMARK 3 S11: -0.4006 S12: -0.8109 S13: 0.7324 REMARK 3 S21: 0.6285 S22: 0.1555 S23: -0.2065 REMARK 3 S31: -0.2975 S32: 0.4884 S33: 0.4410 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 561 THROUGH 647 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.8754 47.1324 47.1443 REMARK 3 T TENSOR REMARK 3 T11: 0.1382 T22: 0.0736 REMARK 3 T33: 0.1840 T12: 0.0036 REMARK 3 T13: -0.0535 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.3407 L22: 1.4277 REMARK 3 L33: 1.3456 L12: -0.0599 REMARK 3 L13: 0.9304 L23: -0.1625 REMARK 3 S TENSOR REMARK 3 S11: -0.1484 S12: -0.0722 S13: 0.4188 REMARK 3 S21: 0.0432 S22: -0.1226 S23: -0.3155 REMARK 3 S31: -0.2464 S32: 0.1232 S33: 0.0377 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 648 THROUGH 705 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.7581 31.7811 53.7829 REMARK 3 T TENSOR REMARK 3 T11: 0.1356 T22: 0.2123 REMARK 3 T33: 0.1778 T12: -0.0151 REMARK 3 T13: -0.0055 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 1.7040 L22: 0.9420 REMARK 3 L33: 2.3891 L12: -0.6784 REMARK 3 L13: 0.4615 L23: -0.1634 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: -0.1468 S13: -0.1343 REMARK 3 S21: 0.0298 S22: -0.0004 S23: -0.0657 REMARK 3 S31: 0.1425 S32: -0.1076 S33: 0.1131 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 706 THROUGH 735 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8729 39.4623 54.4210 REMARK 3 T TENSOR REMARK 3 T11: 0.1462 T22: 0.1699 REMARK 3 T33: 0.0697 T12: 0.0190 REMARK 3 T13: -0.0346 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.1097 L22: 0.9546 REMARK 3 L33: 0.9295 L12: -0.1867 REMARK 3 L13: -0.0645 L23: -0.4573 REMARK 3 S TENSOR REMARK 3 S11: -0.1559 S12: -0.4101 S13: 0.0534 REMARK 3 S21: 0.1213 S22: -0.0559 S23: -0.2486 REMARK 3 S31: -0.2411 S32: -0.0079 S33: 0.1154 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 736 THROUGH 790 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9697 32.0740 51.5507 REMARK 3 T TENSOR REMARK 3 T11: 0.1158 T22: 0.1382 REMARK 3 T33: 0.1097 T12: 0.0067 REMARK 3 T13: 0.0163 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 2.0596 L22: 0.7217 REMARK 3 L33: 1.1178 L12: 0.3711 REMARK 3 L13: 0.0477 L23: -0.2586 REMARK 3 S TENSOR REMARK 3 S11: -0.0305 S12: -0.2839 S13: -0.2286 REMARK 3 S21: 0.0623 S22: -0.0815 S23: -0.1203 REMARK 3 S31: 0.0726 S32: -0.0989 S33: 0.0243 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6A5K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1300008192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2827 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42734 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 16.90 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : 0.87400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM SODIUM TARTRATE, 20% REMARK 280 PEG 3350, PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.55650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.07600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.55650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.07600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 264 REMARK 465 SER A 265 REMARK 465 GLY A 266 REMARK 465 GLY A 378 REMARK 465 GLY A 379 REMARK 465 TYR A 380 REMARK 465 ASP A 381 REMARK 465 ASP A 382 REMARK 465 HIS A 383 REMARK 465 LEU A 384 REMARK 465 ASP A 385 REMARK 465 GLY A 396 REMARK 465 GLY A 397 REMARK 465 ASN A 398 REMARK 465 VAL A 399 REMARK 465 MSE A 400 REMARK 465 GLN A 401 REMARK 465 VAL A 402 REMARK 465 LYS A 403 REMARK 465 LYS A 404 REMARK 465 LYS A 405 REMARK 465 GLY A 406 REMARK 465 GLU A 407 REMARK 465 GLU A 408 REMARK 465 LEU A 409 REMARK 465 LYS A 410 REMARK 465 GLU A 411 REMARK 465 PRO A 412 REMARK 465 LYS A 442 REMARK 465 SER A 443 REMARK 465 THR A 444 REMARK 465 HIS A 445 REMARK 465 ASP A 446 REMARK 465 LYS A 447 REMARK 465 SER A 470 REMARK 465 HIS A 471 REMARK 465 GLU A 563 REMARK 465 ALA A 564 REMARK 465 ARG A 565 REMARK 465 LEU A 685 REMARK 465 GLY A 686 REMARK 465 THR A 687 REMARK 465 GLN A 688 REMARK 465 ALA A 689 REMARK 465 GLY A 690 REMARK 465 ARG A 691 REMARK 465 SER A 692 REMARK 465 MSE A 693 REMARK 465 ALA A 694 REMARK 465 GLU A 695 REMARK 465 GLY A 696 REMARK 465 ASP A 697 REMARK 465 VAL A 766 REMARK 465 ARG A 767 REMARK 465 ASP A 768 REMARK 465 SER A 769 REMARK 465 LYS A 770 REMARK 465 GLY A 771 REMARK 465 ASN A 772 REMARK 465 ILE A 773 REMARK 465 LYS A 774 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 296 49.35 -69.59 REMARK 500 ASP A 297 -11.87 -154.91 REMARK 500 GLN A 357 -38.57 -132.62 REMARK 500 THR A 419 -119.44 39.43 REMARK 500 ASP A 526 -159.93 -144.55 REMARK 500 GLU A 561 -171.23 172.92 REMARK 500 VAL A 609 -72.92 -129.39 REMARK 500 ILE A 642 -69.72 -100.74 REMARK 500 ASN A 711 -165.53 -108.21 REMARK 500 TYR A 731 -41.49 -153.17 REMARK 500 ARG A 787 -30.62 77.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1300 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1301 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A1302 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A1303 DISTANCE = 6.57 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 803 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 553 SG REMARK 620 2 CYS A 555 SG 108.3 REMARK 620 3 CYS A 559 SG 104.5 106.5 REMARK 620 4 CYS A 567 SG 118.5 101.5 116.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 553 SG REMARK 620 2 CYS A 569 SG 118.4 REMARK 620 3 CYS A 595 SG 112.9 109.6 REMARK 620 4 CYS A 599 SG 100.8 104.0 110.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 559 SG REMARK 620 2 CYS A 595 SG 108.4 REMARK 620 3 CYS A 601 SG 121.6 104.5 REMARK 620 4 CYS A 605 SG 99.4 112.3 110.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 804 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 720 SG REMARK 620 2 CYS A 778 SG 108.3 REMARK 620 3 CYS A 780 SG 108.1 106.2 REMARK 620 4 CYS A 785 SG 113.9 108.2 111.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 805 DBREF 6A5K A 264 790 UNP Q8VZ17 SUVH6_ARATH 264 790 SEQADV 6A5K LEU A 777 UNP Q8VZ17 PRO 777 ENGINEERED MUTATION SEQRES 1 A 527 SER SER GLY ASP SER SER ARG ASN LYS VAL LYS GLU THR SEQRES 2 A 527 LEU ARG LEU PHE HIS GLY VAL CYS ARG LYS ILE LEU GLN SEQRES 3 A 527 GLU ASP GLU ALA LYS PRO GLU ASP GLN ARG ARG LYS GLY SEQRES 4 A 527 LYS GLY LEU ARG ILE ASP PHE GLU ALA SER THR ILE LEU SEQRES 5 A 527 LYS ARG ASN GLY LYS PHE LEU ASN SER GLY VAL HIS ILE SEQRES 6 A 527 LEU GLY GLU VAL PRO GLY VAL GLU VAL GLY ASP GLU PHE SEQRES 7 A 527 GLN TYR ARG MSE GLU LEU ASN ILE LEU GLY ILE HIS LYS SEQRES 8 A 527 PRO SER GLN ALA GLY ILE ASP TYR MSE LYS TYR GLY LYS SEQRES 9 A 527 ALA LYS VAL ALA THR SER ILE VAL ALA SER GLY GLY TYR SEQRES 10 A 527 ASP ASP HIS LEU ASP ASN SER ASP VAL LEU THR TYR THR SEQRES 11 A 527 GLY GLN GLY GLY ASN VAL MSE GLN VAL LYS LYS LYS GLY SEQRES 12 A 527 GLU GLU LEU LYS GLU PRO GLU ASP GLN LYS LEU ILE THR SEQRES 13 A 527 GLY ASN LEU ALA LEU ALA THR SER ILE GLU LYS GLN THR SEQRES 14 A 527 PRO VAL ARG VAL ILE ARG GLY LYS HIS LYS SER THR HIS SEQRES 15 A 527 ASP LYS SER LYS GLY GLY ASN TYR VAL TYR ASP GLY LEU SEQRES 16 A 527 TYR LEU VAL GLU LYS TYR TRP GLN GLN VAL GLY SER HIS SEQRES 17 A 527 GLY MSE ASN VAL PHE LYS PHE GLN LEU ARG ARG ILE PRO SEQRES 18 A 527 GLY GLN PRO GLU LEU SER TRP VAL GLU VAL LYS LYS SER SEQRES 19 A 527 LYS SER LYS TYR ARG GLU GLY LEU CYS LYS LEU ASP ILE SEQRES 20 A 527 SER GLU GLY LYS GLU GLN SER PRO ILE SER ALA VAL ASN SEQRES 21 A 527 GLU ILE ASP ASP GLU LYS PRO PRO LEU PHE THR TYR THR SEQRES 22 A 527 VAL LYS LEU ILE TYR PRO ASP TRP CYS ARG PRO VAL PRO SEQRES 23 A 527 PRO LYS SER CYS CYS CYS THR THR ARG CYS THR GLU ALA SEQRES 24 A 527 GLU ALA ARG VAL CYS ALA CYS VAL GLU LYS ASN GLY GLY SEQRES 25 A 527 GLU ILE PRO TYR ASN PHE ASP GLY ALA ILE VAL GLY ALA SEQRES 26 A 527 LYS PRO THR ILE TYR GLU CYS GLY PRO LEU CYS LYS CYS SEQRES 27 A 527 PRO SER SER CYS TYR LEU ARG VAL THR GLN HIS GLY ILE SEQRES 28 A 527 LYS LEU PRO LEU GLU ILE PHE LYS THR LYS SER ARG GLY SEQRES 29 A 527 TRP GLY VAL ARG CYS LEU LYS SER ILE PRO ILE GLY SER SEQRES 30 A 527 PHE ILE CYS GLU TYR VAL GLY GLU LEU LEU GLU ASP SER SEQRES 31 A 527 GLU ALA GLU ARG ARG ILE GLY ASN ASP GLU TYR LEU PHE SEQRES 32 A 527 ASP ILE GLY ASN ARG TYR ASP ASN SER LEU ALA GLN GLY SEQRES 33 A 527 MSE SER GLU LEU MSE LEU GLY THR GLN ALA GLY ARG SER SEQRES 34 A 527 MSE ALA GLU GLY ASP GLU SER SER GLY PHE THR ILE ASP SEQRES 35 A 527 ALA ALA SER LYS GLY ASN VAL GLY ARG PHE ILE ASN HIS SEQRES 36 A 527 SER CYS SER PRO ASN LEU TYR ALA GLN ASN VAL LEU TYR SEQRES 37 A 527 ASP HIS GLU ASP SER ARG ILE PRO HIS VAL MSE PHE PHE SEQRES 38 A 527 ALA GLN ASP ASN ILE PRO PRO LEU GLN GLU LEU CYS TYR SEQRES 39 A 527 ASP TYR ASN TYR ALA LEU ASP GLN VAL ARG ASP SER LYS SEQRES 40 A 527 GLY ASN ILE LYS GLN LYS LEU CYS PHE CYS GLY ALA ALA SEQRES 41 A 527 VAL CYS ARG ARG ARG LEU TYR MODRES 6A5K MSE A 345 MET MODIFIED RESIDUE MODRES 6A5K MSE A 363 MET MODIFIED RESIDUE MODRES 6A5K MSE A 473 MET MODIFIED RESIDUE MODRES 6A5K MSE A 680 MET MODIFIED RESIDUE MODRES 6A5K MSE A 684 MET MODIFIED RESIDUE MODRES 6A5K MSE A 742 MET MODIFIED RESIDUE HET MSE A 345 8 HET MSE A 363 8 HET MSE A 473 8 HET MSE A 680 8 HET MSE A 684 8 HET MSE A 742 8 HET ZN A 801 1 HET ZN A 802 1 HET ZN A 803 1 HET ZN A 804 1 HET SAM A 805 27 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 ZN 4(ZN 2+) FORMUL 6 SAM C15 H22 N6 O5 S FORMUL 7 HOH *403(H2 O) HELIX 1 AA1 ASP A 267 ALA A 293 1 27 HELIX 2 AA2 ARG A 306 ASN A 318 1 13 HELIX 3 AA3 TYR A 343 LEU A 350 1 8 HELIX 4 AA4 ILE A 418 GLN A 431 1 14 HELIX 5 AA5 LEU A 489 LYS A 498 1 10 HELIX 6 AA6 PRO A 542 ARG A 546 5 5 HELIX 7 AA7 CYS A 567 ASN A 573 1 7 HELIX 8 AA8 VAL A 609 GLY A 613 5 5 HELIX 9 AA9 ASP A 652 ARG A 658 1 7 HELIX 10 AB1 ASN A 661 GLU A 663 5 3 HELIX 11 AB2 ASN A 674 MSE A 684 1 11 HELIX 12 AB3 ASN A 711 ILE A 716 5 6 SHEET 1 AA1 5 GLU A 340 PHE A 341 0 SHEET 2 AA1 5 TYR A 453 VAL A 468 -1 O TYR A 453 N PHE A 341 SHEET 3 AA1 5 VAL A 434 GLY A 439 -1 N ARG A 438 O VAL A 454 SHEET 4 AA1 5 ALA A 368 ALA A 376 1 N ALA A 376 O GLY A 439 SHEET 5 AA1 5 ILE A 360 TYR A 365 -1 N TYR A 365 O ALA A 368 SHEET 1 AA2 4 GLU A 340 PHE A 341 0 SHEET 2 AA2 4 TYR A 453 VAL A 468 -1 O TYR A 453 N PHE A 341 SHEET 3 AA2 4 ASN A 474 ARG A 482 -1 O VAL A 475 N GLN A 467 SHEET 4 AA2 4 VAL A 389 THR A 393 -1 N LEU A 390 O LEU A 480 SHEET 1 AA3 6 LEU A 505 LYS A 507 0 SHEET 2 AA3 6 SER A 520 VAL A 522 -1 O ALA A 521 N CYS A 506 SHEET 3 AA3 6 LEU A 618 LYS A 622 1 O ILE A 620 N SER A 520 SHEET 4 AA3 6 TRP A 628 CYS A 632 -1 O ARG A 631 N GLU A 619 SHEET 5 AA3 6 GLU A 754 TYR A 757 -1 O LEU A 755 N VAL A 630 SHEET 6 AA3 6 ASN A 717 HIS A 718 1 N ASN A 717 O TYR A 757 SHEET 1 AA4 2 THR A 534 TYR A 535 0 SHEET 2 AA4 2 LYS A 709 GLY A 710 1 O GLY A 710 N THR A 534 SHEET 1 AA5 4 THR A 591 TYR A 593 0 SHEET 2 AA5 4 LEU A 724 LEU A 730 1 O LEU A 730 N ILE A 592 SHEET 3 AA5 4 HIS A 740 ALA A 745 -1 O MSE A 742 N GLN A 727 SHEET 4 AA5 4 PHE A 641 GLU A 644 -1 N ILE A 642 O PHE A 743 SHEET 1 AA6 3 GLU A 648 GLU A 651 0 SHEET 2 AA6 3 SER A 699 ASP A 705 -1 O ASP A 705 N GLU A 648 SHEET 3 AA6 3 LEU A 665 GLY A 669 -1 N PHE A 666 O ILE A 704 SHEET 1 AA7 2 LYS A 776 LEU A 777 0 SHEET 2 AA7 2 ARG A 788 TYR A 790 -1 O LEU A 789 N LYS A 776 LINK C ARG A 344 N MSE A 345 1555 1555 1.33 LINK C MSE A 345 N GLU A 346 1555 1555 1.33 LINK C TYR A 362 N MSE A 363 1555 1555 1.33 LINK C MSE A 363 N LYS A 364 1555 1555 1.33 LINK C GLY A 472 N MSE A 473 1555 1555 1.33 LINK C MSE A 473 N ASN A 474 1555 1555 1.33 LINK SG CYS A 553 ZN ZN A 803 1555 1555 2.54 LINK SG CYS A 553 ZN ZN A 801 1555 1555 2.40 LINK SG CYS A 555 ZN ZN A 803 1555 1555 2.53 LINK SG CYS A 559 ZN ZN A 802 1555 1555 2.38 LINK SG CYS A 559 ZN ZN A 803 1555 1555 2.31 LINK SG CYS A 567 ZN ZN A 803 1555 1555 2.31 LINK SG CYS A 569 ZN ZN A 801 1555 1555 2.31 LINK SG CYS A 595 ZN ZN A 802 1555 1555 2.41 LINK SG CYS A 595 ZN ZN A 801 1555 1555 2.41 LINK SG CYS A 599 ZN ZN A 801 1555 1555 2.35 LINK SG CYS A 601 ZN ZN A 802 1555 1555 2.32 LINK SG CYS A 605 ZN ZN A 802 1555 1555 2.40 LINK C GLY A 679 N MSE A 680 1555 1555 1.33 LINK C MSE A 680 N SER A 681 1555 1555 1.33 LINK C LEU A 683 N MSE A 684 1555 1555 1.33 LINK SG CYS A 720 ZN ZN A 804 1555 1555 2.42 LINK C VAL A 741 N MSE A 742 1555 1555 1.33 LINK C MSE A 742 N PHE A 743 1555 1555 1.33 LINK SG CYS A 778 ZN ZN A 804 1555 1555 2.36 LINK SG CYS A 780 ZN ZN A 804 1555 1555 2.37 LINK SG CYS A 785 ZN ZN A 804 1555 1555 2.30 SITE 1 AC1 4 CYS A 553 CYS A 569 CYS A 595 CYS A 599 SITE 1 AC2 4 CYS A 559 CYS A 595 CYS A 601 CYS A 605 SITE 1 AC3 4 CYS A 553 CYS A 555 CYS A 559 CYS A 567 SITE 1 AC4 4 CYS A 720 CYS A 778 CYS A 780 CYS A 785 SITE 1 AC5 17 ARG A 626 TRP A 628 GLU A 663 TYR A 664 SITE 2 AC5 17 ARG A 714 PHE A 715 ASN A 717 HIS A 718 SITE 3 AC5 17 TYR A 759 LYS A 776 LEU A 777 CYS A 778 SITE 4 AC5 17 PHE A 779 HOH A1066 HOH A1135 HOH A1163 SITE 5 AC5 17 HOH A1168 CRYST1 77.113 122.152 56.315 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012968 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017757 0.00000