HEADER HYDROLASE 27-JUN-18 6A6A TITLE VANYB IN COMPLEX WITH D-ALANINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANYL-D-ALANINE CARBOXYPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DD-PEPTIDASE; COMPND 5 EC: 3.4.16.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 226185; SOURCE 4 STRAIN: ATCC 700802 / V583; SOURCE 5 GENE: VANYB, EF_2297; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VANCOMYCIN RESISTANCE, PEPTIDASE, METALLOPEPTIDASE FAMILY M15, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.S.KIM,H.HAHN REVDAT 2 22-NOV-23 6A6A 1 LINK REVDAT 1 05-SEP-18 6A6A 0 JRNL AUTH H.S.KIM,H.HAHN,J.KIM,D.M.JANG,J.Y.LEE,J.M.BACK,H.N.IM,H.KIM, JRNL AUTH 2 B.W.HAN,S.W.SUH JRNL TITL STRUCTURAL BASIS FOR THE SUBSTRATE RECOGNITION OF JRNL TITL 2 PEPTIDOGLYCAN PENTAPEPTIDES BY ENTEROCOCCUS FAECALIS VANYB. JRNL REF INT. J. BIOL. MACROMOL. V. 119 335 2018 JRNL REFN ISSN 1879-0003 JRNL PMID 30016658 JRNL DOI 10.1016/J.IJBIOMAC.2018.07.081 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 16380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 880 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 765 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2941 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 22 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.73000 REMARK 3 B22 (A**2) : -0.78000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.400 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.277 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.208 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.616 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3083 ; 0.009 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2685 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4165 ; 1.360 ; 1.681 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6302 ; 0.907 ; 1.681 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 362 ; 6.921 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;36.519 ;22.928 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 492 ;16.546 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;27.680 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3456 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 564 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1462 ; 2.266 ; 3.398 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1459 ; 2.267 ; 3.400 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1818 ; 3.454 ; 5.090 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1819 ; 3.453 ; 5.089 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1619 ; 2.508 ; 3.774 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1619 ; 2.508 ; 3.774 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2347 ; 3.959 ; 5.533 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3631 ; 5.669 ;40.552 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3632 ; 5.668 ;40.561 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6A6A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1300008159. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17526 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5ZHF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1500, SODIUM ACETATE, PH 4.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.68400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.41500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.68400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.41500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 52 REMARK 465 GLN A 53 REMARK 465 LEU A 54 REMARK 465 PRO A 55 REMARK 465 PRO A 56 REMARK 465 ILE A 57 REMARK 465 PRO A 58 REMARK 465 ALA A 59 REMARK 465 THR A 60 REMARK 465 HIS A 61 REMARK 465 THR A 62 REMARK 465 GLY A 63 REMARK 465 SER A 64 REMARK 465 GLY A 65 REMARK 465 THR A 66 REMARK 465 GLY A 67 REMARK 465 VAL A 68 REMARK 465 ALA A 69 REMARK 465 GLU A 70 REMARK 465 ASN A 71 REMARK 465 PRO A 72 REMARK 465 GLU A 73 REMARK 465 GLU A 74 REMARK 465 ASN A 75 REMARK 465 THR A 76 REMARK 465 LEU A 77 REMARK 465 ALA A 78 REMARK 465 THR A 79 REMARK 465 ALA A 80 REMARK 465 LYS A 81 REMARK 465 GLU A 82 REMARK 465 GLN A 83 REMARK 465 GLY A 84 REMARK 465 ASP A 85 REMARK 465 GLU A 86 REMARK 465 GLN A 87 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 465 HIS A 276 REMARK 465 THR B 52 REMARK 465 GLN B 53 REMARK 465 LEU B 54 REMARK 465 PRO B 55 REMARK 465 PRO B 56 REMARK 465 ILE B 57 REMARK 465 PRO B 58 REMARK 465 ALA B 59 REMARK 465 THR B 60 REMARK 465 HIS B 61 REMARK 465 THR B 62 REMARK 465 GLY B 63 REMARK 465 SER B 64 REMARK 465 GLY B 65 REMARK 465 THR B 66 REMARK 465 GLY B 67 REMARK 465 VAL B 68 REMARK 465 ALA B 69 REMARK 465 GLU B 70 REMARK 465 ASN B 71 REMARK 465 PRO B 72 REMARK 465 GLU B 73 REMARK 465 GLU B 74 REMARK 465 ASN B 75 REMARK 465 THR B 76 REMARK 465 LEU B 77 REMARK 465 ALA B 78 REMARK 465 THR B 79 REMARK 465 ALA B 80 REMARK 465 LYS B 81 REMARK 465 GLU B 82 REMARK 465 GLN B 83 REMARK 465 GLY B 84 REMARK 465 ASP B 85 REMARK 465 GLU B 86 REMARK 465 GLN B 87 REMARK 465 LEU B 269 REMARK 465 GLU B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 465 HIS B 274 REMARK 465 HIS B 275 REMARK 465 HIS B 276 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 238 CD GLU B 238 OE2 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 146 0.13 SIDE CHAIN REMARK 500 ARG A 223 0.08 SIDE CHAIN REMARK 500 ARG B 116 0.11 SIDE CHAIN REMARK 500 ARG B 120 0.08 SIDE CHAIN REMARK 500 ARG B 146 0.11 SIDE CHAIN REMARK 500 ARG B 223 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 188 NE2 REMARK 620 2 ASP A 195 OD1 101.0 REMARK 620 3 ASP A 195 OD2 80.4 53.7 REMARK 620 4 HIS A 241 ND1 93.8 100.8 151.3 REMARK 620 5 ACT A 304 O 89.1 124.7 75.4 132.9 REMARK 620 6 ACT A 304 OXT 149.7 92.7 86.4 110.2 61.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 188 NE2 REMARK 620 2 ASP B 195 OD1 93.3 REMARK 620 3 HIS B 241 ND1 99.6 112.5 REMARK 620 4 ACT B 304 O 146.0 95.9 106.8 REMARK 620 5 ACT B 304 OXT 90.5 114.6 131.0 55.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DAL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DAL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 307 DBREF 6A6A A 52 268 UNP Q47746 VANY_ENTFA 52 268 DBREF 6A6A B 52 268 UNP Q47746 VANY_ENTFA 52 268 SEQADV 6A6A LEU A 269 UNP Q47746 EXPRESSION TAG SEQADV 6A6A GLU A 270 UNP Q47746 EXPRESSION TAG SEQADV 6A6A HIS A 271 UNP Q47746 EXPRESSION TAG SEQADV 6A6A HIS A 272 UNP Q47746 EXPRESSION TAG SEQADV 6A6A HIS A 273 UNP Q47746 EXPRESSION TAG SEQADV 6A6A HIS A 274 UNP Q47746 EXPRESSION TAG SEQADV 6A6A HIS A 275 UNP Q47746 EXPRESSION TAG SEQADV 6A6A HIS A 276 UNP Q47746 EXPRESSION TAG SEQADV 6A6A LEU B 269 UNP Q47746 EXPRESSION TAG SEQADV 6A6A GLU B 270 UNP Q47746 EXPRESSION TAG SEQADV 6A6A HIS B 271 UNP Q47746 EXPRESSION TAG SEQADV 6A6A HIS B 272 UNP Q47746 EXPRESSION TAG SEQADV 6A6A HIS B 273 UNP Q47746 EXPRESSION TAG SEQADV 6A6A HIS B 274 UNP Q47746 EXPRESSION TAG SEQADV 6A6A HIS B 275 UNP Q47746 EXPRESSION TAG SEQADV 6A6A HIS B 276 UNP Q47746 EXPRESSION TAG SEQRES 1 A 225 THR GLN LEU PRO PRO ILE PRO ALA THR HIS THR GLY SER SEQRES 2 A 225 GLY THR GLY VAL ALA GLU ASN PRO GLU GLU ASN THR LEU SEQRES 3 A 225 ALA THR ALA LYS GLU GLN GLY ASP GLU GLN GLU TRP SER SEQRES 4 A 225 LEU ILE LEU VAL ASN ARG GLN ASN PRO ILE PRO ALA GLN SEQRES 5 A 225 TYR ASP VAL GLU LEU GLU GLN LEU SER ASN GLY GLU ARG SEQRES 6 A 225 ILE ASP ILE ARG ILE SER PRO TYR LEU GLN ASP LEU PHE SEQRES 7 A 225 ASP ALA ALA ARG ALA ASP GLY VAL TYR PRO ILE VAL ALA SEQRES 8 A 225 SER GLY TYR ARG THR THR GLU LYS GLN GLN GLU ILE MET SEQRES 9 A 225 ASP GLU LYS VAL ALA GLU TYR LYS ALA LYS GLY TYR THR SEQRES 10 A 225 SER ALA GLN ALA LYS ALA GLU ALA GLU THR TRP VAL ALA SEQRES 11 A 225 VAL PRO GLY THR SER GLU HIS GLN LEU GLY LEU ALA VAL SEQRES 12 A 225 ASP ILE ASN ALA ASP GLY ILE HIS SER THR GLY ASN GLU SEQRES 13 A 225 VAL TYR ARG TRP LEU ASP GLU ASN SER TYR ARG PHE GLY SEQRES 14 A 225 PHE ILE ARG ARG TYR PRO PRO ASP LYS THR GLU ILE THR SEQRES 15 A 225 GLY VAL SER ASN GLU PRO TRP HIS TYR ARG TYR VAL GLY SEQRES 16 A 225 ILE GLU ALA ALA THR LYS ILE TYR HIS GLN GLY LEU CYS SEQRES 17 A 225 LEU GLU GLU TYR LEU ASN THR GLU LYS LEU GLU HIS HIS SEQRES 18 A 225 HIS HIS HIS HIS SEQRES 1 B 225 THR GLN LEU PRO PRO ILE PRO ALA THR HIS THR GLY SER SEQRES 2 B 225 GLY THR GLY VAL ALA GLU ASN PRO GLU GLU ASN THR LEU SEQRES 3 B 225 ALA THR ALA LYS GLU GLN GLY ASP GLU GLN GLU TRP SER SEQRES 4 B 225 LEU ILE LEU VAL ASN ARG GLN ASN PRO ILE PRO ALA GLN SEQRES 5 B 225 TYR ASP VAL GLU LEU GLU GLN LEU SER ASN GLY GLU ARG SEQRES 6 B 225 ILE ASP ILE ARG ILE SER PRO TYR LEU GLN ASP LEU PHE SEQRES 7 B 225 ASP ALA ALA ARG ALA ASP GLY VAL TYR PRO ILE VAL ALA SEQRES 8 B 225 SER GLY TYR ARG THR THR GLU LYS GLN GLN GLU ILE MET SEQRES 9 B 225 ASP GLU LYS VAL ALA GLU TYR LYS ALA LYS GLY TYR THR SEQRES 10 B 225 SER ALA GLN ALA LYS ALA GLU ALA GLU THR TRP VAL ALA SEQRES 11 B 225 VAL PRO GLY THR SER GLU HIS GLN LEU GLY LEU ALA VAL SEQRES 12 B 225 ASP ILE ASN ALA ASP GLY ILE HIS SER THR GLY ASN GLU SEQRES 13 B 225 VAL TYR ARG TRP LEU ASP GLU ASN SER TYR ARG PHE GLY SEQRES 14 B 225 PHE ILE ARG ARG TYR PRO PRO ASP LYS THR GLU ILE THR SEQRES 15 B 225 GLY VAL SER ASN GLU PRO TRP HIS TYR ARG TYR VAL GLY SEQRES 16 B 225 ILE GLU ALA ALA THR LYS ILE TYR HIS GLN GLY LEU CYS SEQRES 17 B 225 LEU GLU GLU TYR LEU ASN THR GLU LYS LEU GLU HIS HIS SEQRES 18 B 225 HIS HIS HIS HIS HET DAL A 301 6 HET GOL A 302 6 HET GOL A 303 6 HET ACT A 304 4 HET ZN A 305 1 HET PGE A 306 10 HET PGE A 307 10 HET DAL B 301 6 HET GOL B 302 6 HET GOL B 303 6 HET ACT B 304 4 HET ZN B 305 1 HET PGE B 306 10 HET PGE B 307 10 HETNAM DAL D-ALANINE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM ZN ZINC ION HETNAM PGE TRIETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 DAL 2(C3 H7 N O2) FORMUL 4 GOL 4(C3 H8 O3) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 7 ZN 2(ZN 2+) FORMUL 8 PGE 4(C6 H14 O4) FORMUL 17 HOH *22(H2 O) HELIX 1 AA1 GLU A 88 ILE A 92 5 5 HELIX 2 AA2 ILE A 121 ASP A 135 1 15 HELIX 3 AA3 THR A 147 ALA A 164 1 18 HELIX 4 AA4 THR A 168 GLU A 177 1 10 HELIX 5 AA5 SER A 186 LEU A 190 5 5 HELIX 6 AA6 THR A 204 SER A 216 1 13 HELIX 7 AA7 TYR A 217 PHE A 219 5 3 HELIX 8 AA8 PRO A 226 ASP A 228 5 3 HELIX 9 AA9 LYS A 229 GLY A 234 1 6 HELIX 10 AB1 GLY A 246 GLY A 257 1 12 HELIX 11 AB2 CYS A 259 GLU A 270 1 12 HELIX 12 AB3 GLU B 88 ILE B 92 5 5 HELIX 13 AB4 ILE B 121 ASP B 135 1 15 HELIX 14 AB5 THR B 147 LYS B 165 1 19 HELIX 15 AB6 THR B 168 GLU B 177 1 10 HELIX 16 AB7 SER B 186 LEU B 190 5 5 HELIX 17 AB8 THR B 204 SER B 216 1 13 HELIX 18 AB9 TYR B 217 PHE B 219 5 3 HELIX 19 AC1 PRO B 226 ASP B 228 5 3 HELIX 20 AC2 LYS B 229 GLY B 234 1 6 HELIX 21 AC3 GLY B 246 GLY B 257 1 12 HELIX 22 AC4 CYS B 259 LYS B 268 1 10 SHEET 1 AA1 2 LEU A 108 GLN A 110 0 SHEET 2 AA1 2 ARG A 116 ASP A 118 -1 O ILE A 117 N GLU A 109 SHEET 1 AA2 4 PRO A 139 SER A 143 0 SHEET 2 AA2 4 ALA A 193 ALA A 198 -1 O ASN A 197 N ILE A 140 SHEET 3 AA2 4 HIS A 241 TYR A 244 -1 O TYR A 242 N VAL A 194 SHEET 4 AA2 4 PHE A 221 ARG A 223 -1 N ILE A 222 O ARG A 243 SHEET 1 AA3 2 LEU B 108 GLN B 110 0 SHEET 2 AA3 2 ARG B 116 ASP B 118 -1 O ILE B 117 N GLU B 109 SHEET 1 AA4 4 PRO B 139 SER B 143 0 SHEET 2 AA4 4 ALA B 193 ALA B 198 -1 O ASP B 195 N SER B 143 SHEET 3 AA4 4 HIS B 241 TYR B 244 -1 O TYR B 242 N VAL B 194 SHEET 4 AA4 4 PHE B 221 ARG B 223 -1 N ILE B 222 O ARG B 243 LINK NE2 HIS A 188 ZN ZN A 305 1555 1555 2.03 LINK OD1 ASP A 195 ZN ZN A 305 1555 1555 2.02 LINK OD2 ASP A 195 ZN ZN A 305 1555 1555 2.63 LINK ND1 HIS A 241 ZN ZN A 305 1555 1555 1.95 LINK O ACT A 304 ZN ZN A 305 1555 1555 2.16 LINK OXT ACT A 304 ZN ZN A 305 1555 1555 2.16 LINK NE2 HIS B 188 ZN ZN B 305 1555 1555 2.02 LINK OD1 ASP B 195 ZN ZN B 305 1555 1555 2.07 LINK ND1 HIS B 241 ZN ZN B 305 1555 1555 1.91 LINK O ACT B 304 ZN ZN B 305 1555 1555 2.48 LINK OXT ACT B 304 ZN ZN B 305 1555 1555 2.19 SITE 1 AC1 11 ARG A 146 GLN A 151 TRP A 179 VAL A 180 SITE 2 AC1 11 ALA A 181 SER A 186 HIS A 188 TYR A 225 SITE 3 AC1 11 GLU A 238 ACT A 304 HOH A 403 SITE 1 AC2 8 LEU A 111 SER A 112 ASN A 113 ARG A 133 SITE 2 AC2 8 ILE A 140 VAL A 141 GOL A 303 GLU B 153 SITE 1 AC3 4 LEU A 125 PHE A 129 ARG A 133 GOL A 302 SITE 1 AC4 9 ARG A 146 TRP A 179 HIS A 188 ASP A 195 SITE 2 AC4 9 GLU A 238 TRP A 240 HIS A 241 DAL A 301 SITE 3 AC4 9 ZN A 305 SITE 1 AC5 4 HIS A 188 ASP A 195 HIS A 241 ACT A 304 SITE 1 AC6 3 LYS A 158 TRP A 179 PGE A 307 SITE 1 AC7 3 ASN A 197 TRP A 240 PGE A 306 SITE 1 AC8 10 ARG B 146 GLN B 151 TRP B 179 VAL B 180 SITE 2 AC8 10 ALA B 181 SER B 186 HIS B 188 TYR B 225 SITE 3 AC8 10 GLU B 238 ACT B 304 SITE 1 AC9 6 GLU A 153 SER B 112 ASN B 113 ILE B 140 SITE 2 AC9 6 VAL B 141 GOL B 303 SITE 1 AD1 5 LEU B 111 LEU B 125 GLN B 126 PHE B 129 SITE 2 AD1 5 GOL B 302 SITE 1 AD2 9 ARG B 146 TRP B 179 HIS B 188 ASP B 195 SITE 2 AD2 9 GLU B 238 TRP B 240 HIS B 241 DAL B 301 SITE 3 AD2 9 ZN B 305 SITE 1 AD3 4 HIS B 188 ASP B 195 HIS B 241 ACT B 304 SITE 1 AD4 2 LYS B 158 TRP B 179 SITE 1 AD5 3 ASP B 195 ASN B 197 TRP B 240 CRYST1 85.368 40.830 114.672 90.00 109.08 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011714 0.000000 0.004052 0.00000 SCALE2 0.000000 0.024492 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009227 0.00000