data_6A6L # _entry.id 6A6L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6A6L pdb_00006a6l 10.2210/pdb6a6l/pdb WWPDB D_1300008230 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6A6L _pdbx_database_status.recvd_initial_deposition_date 2018-06-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Huang, Y.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of the cold shock domain of YB-1 in complex with m5C RNA' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # _citation_author.citation_id primary _citation_author.name 'Huang, Y.' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 6A6L _cell.details ? _cell.formula_units_Z ? _cell.length_a 66.380 _cell.length_a_esd ? _cell.length_b 66.380 _cell.length_b_esd ? _cell.length_c 34.702 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nuclease-sensitive element-binding protein 1' 8997.026 1 ? ? ? ? 2 polymer man ;RNA (5'-R(P*CP*AP*UP*(5MC))-3') ; 1827.135 1 ? ? ? ? 3 water nat water 18.015 58 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name YB-1 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTG PGG ; ;GSGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTG PGG ; A ? 2 polyribonucleotide no yes 'UCAU(5MC)U' UCAUCU D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLY n 1 4 ASP n 1 5 LYS n 1 6 LYS n 1 7 VAL n 1 8 ILE n 1 9 ALA n 1 10 THR n 1 11 LYS n 1 12 VAL n 1 13 LEU n 1 14 GLY n 1 15 THR n 1 16 VAL n 1 17 LYS n 1 18 TRP n 1 19 PHE n 1 20 ASN n 1 21 VAL n 1 22 ARG n 1 23 ASN n 1 24 GLY n 1 25 TYR n 1 26 GLY n 1 27 PHE n 1 28 ILE n 1 29 ASN n 1 30 ARG n 1 31 ASN n 1 32 ASP n 1 33 THR n 1 34 LYS n 1 35 GLU n 1 36 ASP n 1 37 VAL n 1 38 PHE n 1 39 VAL n 1 40 HIS n 1 41 GLN n 1 42 THR n 1 43 ALA n 1 44 ILE n 1 45 LYS n 1 46 LYS n 1 47 ASN n 1 48 ASN n 1 49 PRO n 1 50 ARG n 1 51 LYS n 1 52 TYR n 1 53 LEU n 1 54 ARG n 1 55 SER n 1 56 VAL n 1 57 GLY n 1 58 ASP n 1 59 GLY n 1 60 GLU n 1 61 THR n 1 62 VAL n 1 63 GLU n 1 64 PHE n 1 65 ASP n 1 66 VAL n 1 67 VAL n 1 68 GLU n 1 69 GLY n 1 70 GLU n 1 71 LYS n 1 72 GLY n 1 73 ALA n 1 74 GLU n 1 75 ALA n 1 76 ALA n 1 77 ASN n 1 78 VAL n 1 79 THR n 1 80 GLY n 1 81 PRO n 1 82 GLY n 1 83 GLY n 2 1 U n 2 2 C n 2 3 A n 2 4 U n 2 5 5MC n 2 6 U n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 83 Human ? YB1 ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 6 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP YBOX1_HUMAN P67809 ? 1 ;GDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPG G ; 50 2 PDB 6A6L 6A6L ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6A6L A 3 ? 83 ? P67809 50 ? 130 ? 50 130 2 2 6A6L D 1 ? 6 ? 6A6L 1 ? 6 ? 1 6 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6A6L GLY A 1 ? UNP P67809 ? ? 'expression tag' 48 1 1 6A6L SER A 2 ? UNP P67809 ? ? 'expression tag' 49 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5MC 'RNA linking' n "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6A6L _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 39.68 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '2.4M Ammonium sulfate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-04-04 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97930 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL18U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97930 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL18U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6A6L _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.78 _reflns.d_resolution_low 30.00 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8518 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 17.5 _reflns.pdbx_Rmerge_I_obs 0.070 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 67.973 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.78 _reflns_shell.d_res_low 1.84 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 856 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.191 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6A6L _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.780 _refine.ls_d_res_low 29.709 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8504 _refine.ls_number_reflns_R_free 857 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.93 _refine.ls_percent_reflns_R_free 10.08 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1826 _refine.ls_R_factor_R_free 0.2068 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1798 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.70 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3PF5 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.67 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.17 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 583 _refine_hist.pdbx_number_atoms_nucleic_acid 83 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 58 _refine_hist.number_atoms_total 724 _refine_hist.d_res_high 1.780 _refine_hist.d_res_low 29.709 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 684 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.934 ? 940 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 12.467 ? 256 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.037 ? 109 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 108 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.7803 1.8918 . . 141 1257 100.00 . . . 0.2624 . 0.1715 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8918 2.0379 . . 142 1262 100.00 . . . 0.2323 . 0.1752 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0379 2.2429 . . 140 1261 100.00 . . . 0.1962 . 0.1676 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2429 2.5673 . . 146 1271 100.00 . . . 0.2069 . 0.1730 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5673 3.2339 . . 142 1272 100.00 . . . 0.1868 . 0.1934 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2339 29.7129 . . 146 1324 100.00 . . . 0.2083 . 0.1810 . . . . . . . . . . # _struct.entry_id 6A6L _struct.title 'Crystal structure of the cold shock domain of YB-1 in complex with m5C RNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6A6L _struct_keywords.text 'CSD domain, CAUC motif, RNA BINDING PROTEIN-RNA complex' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 42 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ILE _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 44 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 89 _struct_conf.end_auth_comp_id ILE _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 91 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id U _struct_conn.ptnr1_label_seq_id 4 _struct_conn.ptnr1_label_atom_id "O3'" _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id 5MC _struct_conn.ptnr2_label_seq_id 5 _struct_conn.ptnr2_label_atom_id P _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id D _struct_conn.ptnr1_auth_comp_id U _struct_conn.ptnr1_auth_seq_id 4 _struct_conn.ptnr2_auth_asym_id D _struct_conn.ptnr2_auth_comp_id 5MC _struct_conn.ptnr2_auth_seq_id 5 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.523 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 7 ? ASN A 20 ? VAL A 54 ASN A 67 AA1 2 TYR A 25 ? ARG A 30 ? TYR A 72 ARG A 77 AA1 3 ASP A 36 ? HIS A 40 ? ASP A 83 HIS A 87 AA1 4 ALA A 73 ? THR A 79 ? ALA A 120 THR A 126 AA1 5 THR A 61 ? GLU A 68 ? THR A 108 GLU A 115 AA1 6 VAL A 7 ? ASN A 20 ? VAL A 54 ASN A 67 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ASN A 20 ? N ASN A 67 O TYR A 25 ? O TYR A 72 AA1 2 3 N ILE A 28 ? N ILE A 75 O VAL A 37 ? O VAL A 84 AA1 3 4 N PHE A 38 ? N PHE A 85 O ALA A 75 ? O ALA A 122 AA1 4 5 O THR A 79 ? O THR A 126 N GLU A 63 ? N GLU A 110 AA1 5 6 O VAL A 66 ? O VAL A 113 N ILE A 8 ? N ILE A 55 # _atom_sites.entry_id 6A6L _atom_sites.fract_transf_matrix[1][1] 0.015065 _atom_sites.fract_transf_matrix[1][2] 0.008698 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017395 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028817 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 48 ? ? ? A . n A 1 2 SER 2 49 ? ? ? A . n A 1 3 GLY 3 50 ? ? ? A . n A 1 4 ASP 4 51 ? ? ? A . n A 1 5 LYS 5 52 52 LYS LYS A . n A 1 6 LYS 6 53 53 LYS LYS A . n A 1 7 VAL 7 54 54 VAL VAL A . n A 1 8 ILE 8 55 55 ILE ILE A . n A 1 9 ALA 9 56 56 ALA ALA A . n A 1 10 THR 10 57 57 THR THR A . n A 1 11 LYS 11 58 58 LYS LYS A . n A 1 12 VAL 12 59 59 VAL VAL A . n A 1 13 LEU 13 60 60 LEU LEU A . n A 1 14 GLY 14 61 61 GLY GLY A . n A 1 15 THR 15 62 62 THR THR A . n A 1 16 VAL 16 63 63 VAL VAL A . n A 1 17 LYS 17 64 64 LYS LYS A . n A 1 18 TRP 18 65 65 TRP TRP A . n A 1 19 PHE 19 66 66 PHE PHE A . n A 1 20 ASN 20 67 67 ASN ASN A . n A 1 21 VAL 21 68 68 VAL VAL A . n A 1 22 ARG 22 69 69 ARG ARG A . n A 1 23 ASN 23 70 70 ASN ASN A . n A 1 24 GLY 24 71 71 GLY GLY A . n A 1 25 TYR 25 72 72 TYR TYR A . n A 1 26 GLY 26 73 73 GLY GLY A . n A 1 27 PHE 27 74 74 PHE PHE A . n A 1 28 ILE 28 75 75 ILE ILE A . n A 1 29 ASN 29 76 76 ASN ASN A . n A 1 30 ARG 30 77 77 ARG ARG A . n A 1 31 ASN 31 78 78 ASN ASN A . n A 1 32 ASP 32 79 79 ASP ASP A . n A 1 33 THR 33 80 80 THR THR A . n A 1 34 LYS 34 81 81 LYS LYS A . n A 1 35 GLU 35 82 82 GLU GLU A . n A 1 36 ASP 36 83 83 ASP ASP A . n A 1 37 VAL 37 84 84 VAL VAL A . n A 1 38 PHE 38 85 85 PHE PHE A . n A 1 39 VAL 39 86 86 VAL VAL A . n A 1 40 HIS 40 87 87 HIS HIS A . n A 1 41 GLN 41 88 88 GLN GLN A . n A 1 42 THR 42 89 89 THR THR A . n A 1 43 ALA 43 90 90 ALA ALA A . n A 1 44 ILE 44 91 91 ILE ILE A . n A 1 45 LYS 45 92 92 LYS LYS A . n A 1 46 LYS 46 93 93 LYS LYS A . n A 1 47 ASN 47 94 94 ASN ASN A . n A 1 48 ASN 48 95 95 ASN ALA A . n A 1 49 PRO 49 96 96 PRO ALA A . n A 1 50 ARG 50 97 ? ? ? A . n A 1 51 LYS 51 98 ? ? ? A . n A 1 52 TYR 52 99 99 TYR TYR A . n A 1 53 LEU 53 100 100 LEU LEU A . n A 1 54 ARG 54 101 101 ARG ARG A . n A 1 55 SER 55 102 102 SER SER A . n A 1 56 VAL 56 103 103 VAL VAL A . n A 1 57 GLY 57 104 104 GLY GLY A . n A 1 58 ASP 58 105 105 ASP ASP A . n A 1 59 GLY 59 106 106 GLY GLY A . n A 1 60 GLU 60 107 107 GLU GLU A . n A 1 61 THR 61 108 108 THR THR A . n A 1 62 VAL 62 109 109 VAL VAL A . n A 1 63 GLU 63 110 110 GLU GLU A . n A 1 64 PHE 64 111 111 PHE PHE A . n A 1 65 ASP 65 112 112 ASP ASP A . n A 1 66 VAL 66 113 113 VAL VAL A . n A 1 67 VAL 67 114 114 VAL VAL A . n A 1 68 GLU 68 115 115 GLU GLU A . n A 1 69 GLY 69 116 116 GLY GLY A . n A 1 70 GLU 70 117 117 GLU GLU A . n A 1 71 LYS 71 118 118 LYS LYS A . n A 1 72 GLY 72 119 119 GLY GLY A . n A 1 73 ALA 73 120 120 ALA ALA A . n A 1 74 GLU 74 121 121 GLU GLU A . n A 1 75 ALA 75 122 122 ALA ALA A . n A 1 76 ALA 76 123 123 ALA ALA A . n A 1 77 ASN 77 124 124 ASN ASN A . n A 1 78 VAL 78 125 125 VAL VAL A . n A 1 79 THR 79 126 126 THR THR A . n A 1 80 GLY 80 127 127 GLY GLY A . n A 1 81 PRO 81 128 128 PRO PRO A . n A 1 82 GLY 82 129 129 GLY GLY A . n A 1 83 GLY 83 130 ? ? ? A . n B 2 1 U 1 1 ? ? ? D . n B 2 2 C 2 2 2 C C D . n B 2 3 A 3 3 3 A A D . n B 2 4 U 4 4 4 U U D . n B 2 5 5MC 5 5 5 5MC 5MC D . n B 2 6 U 6 6 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 201 32 HOH HOH A . C 3 HOH 2 202 17 HOH HOH A . C 3 HOH 3 203 42 HOH HOH A . C 3 HOH 4 204 31 HOH HOH A . C 3 HOH 5 205 12 HOH HOH A . C 3 HOH 6 206 27 HOH HOH A . C 3 HOH 7 207 29 HOH HOH A . C 3 HOH 8 208 52 HOH HOH A . C 3 HOH 9 209 6 HOH HOH A . C 3 HOH 10 210 7 HOH HOH A . C 3 HOH 11 211 11 HOH HOH A . C 3 HOH 12 212 20 HOH HOH A . C 3 HOH 13 213 57 HOH HOH A . C 3 HOH 14 214 1 HOH HOH A . C 3 HOH 15 215 56 HOH HOH A . C 3 HOH 16 216 2 HOH HOH A . C 3 HOH 17 217 4 HOH HOH A . C 3 HOH 18 218 10 HOH HOH A . C 3 HOH 19 219 25 HOH HOH A . C 3 HOH 20 220 51 HOH HOH A . C 3 HOH 21 221 28 HOH HOH A . C 3 HOH 22 222 55 HOH HOH A . C 3 HOH 23 223 18 HOH HOH A . C 3 HOH 24 224 44 HOH HOH A . C 3 HOH 25 225 21 HOH HOH A . C 3 HOH 26 226 9 HOH HOH A . C 3 HOH 27 227 3 HOH HOH A . C 3 HOH 28 228 16 HOH HOH A . C 3 HOH 29 229 8 HOH HOH A . C 3 HOH 30 230 23 HOH HOH A . C 3 HOH 31 231 50 HOH HOH A . C 3 HOH 32 232 13 HOH HOH A . C 3 HOH 33 233 26 HOH HOH A . C 3 HOH 34 234 53 HOH HOH A . C 3 HOH 35 235 33 HOH HOH A . C 3 HOH 36 236 5 HOH HOH A . C 3 HOH 37 237 22 HOH HOH A . C 3 HOH 38 238 37 HOH HOH A . C 3 HOH 39 239 59 HOH HOH A . C 3 HOH 40 240 58 HOH HOH A . C 3 HOH 41 241 14 HOH HOH A . C 3 HOH 42 242 15 HOH HOH A . C 3 HOH 43 243 36 HOH HOH A . C 3 HOH 44 244 38 HOH HOH A . C 3 HOH 45 245 19 HOH HOH A . C 3 HOH 46 246 45 HOH HOH A . C 3 HOH 47 247 48 HOH HOH A . C 3 HOH 48 248 47 HOH HOH A . C 3 HOH 49 249 41 HOH HOH A . C 3 HOH 50 250 35 HOH HOH A . C 3 HOH 51 251 49 HOH HOH A . C 3 HOH 52 252 43 HOH HOH A . C 3 HOH 53 253 39 HOH HOH A . C 3 HOH 54 254 30 HOH HOH A . D 3 HOH 1 101 46 HOH HOH D . D 3 HOH 2 102 54 HOH HOH D . D 3 HOH 3 103 40 HOH HOH D . D 3 HOH 4 104 34 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1310 ? 1 MORE -0 ? 1 'SSA (A^2)' 5180 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id D _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 104 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-06-19 2 'Structure model' 1 1 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.8.4_1496 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NH1 A ARG 69 ? ? O A HOH 201 ? ? 1.46 2 1 O A HOH 239 ? ? O A HOH 240 ? ? 1.78 3 1 O A HOH 240 ? ? O A HOH 249 ? ? 1.94 4 1 O A HOH 225 ? ? O A HOH 246 ? ? 2.00 5 1 OE1 A GLU 115 ? ? O A HOH 202 ? ? 2.10 6 1 OP1 D C 2 ? ? O D HOH 101 ? ? 2.12 7 1 O A ALA 120 ? ? O A HOH 203 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 242 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 248 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_445 _pdbx_validate_symm_contact.dist 2.08 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 D _pdbx_validate_rmsd_bond.auth_comp_id_1 U _pdbx_validate_rmsd_bond.auth_seq_id_1 4 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 P _pdbx_validate_rmsd_bond.auth_asym_id_2 D _pdbx_validate_rmsd_bond.auth_comp_id_2 5MC _pdbx_validate_rmsd_bond.auth_seq_id_2 5 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.523 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.084 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A PRO 96 ? ? CA A PRO 96 ? ? CB A PRO 96 ? ? 111.63 103.30 8.33 1.20 N 2 1 CB A LEU 100 ? ? CG A LEU 100 ? ? CD1 A LEU 100 ? ? 98.89 111.00 -12.11 1.70 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASN 95 ? CG ? A ASN 48 CG 2 1 Y 1 A ASN 95 ? OD1 ? A ASN 48 OD1 3 1 Y 1 A ASN 95 ? ND2 ? A ASN 48 ND2 4 1 Y 1 A PRO 96 ? CG ? A PRO 49 CG 5 1 Y 1 A PRO 96 ? CD ? A PRO 49 CD # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 48 ? A GLY 1 2 1 Y 1 A SER 49 ? A SER 2 3 1 Y 1 A GLY 50 ? A GLY 3 4 1 Y 1 A ASP 51 ? A ASP 4 5 1 Y 1 A ARG 97 ? A ARG 50 6 1 Y 1 A LYS 98 ? A LYS 51 7 1 Y 1 A GLY 130 ? A GLY 83 8 1 Y 1 D U 1 ? B U 1 9 1 Y 1 D U 6 ? B U 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5MC P P N N 1 5MC OP1 O N N 2 5MC OP2 O N N 3 5MC OP3 O N N 4 5MC "O5'" O N N 5 5MC "C5'" C N N 6 5MC "C4'" C N R 7 5MC "O4'" O N N 8 5MC "C3'" C N S 9 5MC "O3'" O N N 10 5MC "C2'" C N R 11 5MC "O2'" O N N 12 5MC "C1'" C N R 13 5MC N1 N N N 14 5MC C2 C N N 15 5MC O2 O N N 16 5MC N3 N N N 17 5MC C4 C N N 18 5MC N4 N N N 19 5MC C5 C N N 20 5MC C6 C N N 21 5MC CM5 C N N 22 5MC HOP2 H N N 23 5MC HOP3 H N N 24 5MC "H5'" H N N 25 5MC "H5''" H N N 26 5MC "H4'" H N N 27 5MC "H3'" H N N 28 5MC "HO3'" H N N 29 5MC "H2'" H N N 30 5MC "HO2'" H N N 31 5MC "H1'" H N N 32 5MC HN41 H N N 33 5MC HN42 H N N 34 5MC H6 H N N 35 5MC HM51 H N N 36 5MC HM52 H N N 37 5MC HM53 H N N 38 A OP3 O N N 39 A P P N N 40 A OP1 O N N 41 A OP2 O N N 42 A "O5'" O N N 43 A "C5'" C N N 44 A "C4'" C N R 45 A "O4'" O N N 46 A "C3'" C N S 47 A "O3'" O N N 48 A "C2'" C N R 49 A "O2'" O N N 50 A "C1'" C N R 51 A N9 N Y N 52 A C8 C Y N 53 A N7 N Y N 54 A C5 C Y N 55 A C6 C Y N 56 A N6 N N N 57 A N1 N Y N 58 A C2 C Y N 59 A N3 N Y N 60 A C4 C Y N 61 A HOP3 H N N 62 A HOP2 H N N 63 A "H5'" H N N 64 A "H5''" H N N 65 A "H4'" H N N 66 A "H3'" H N N 67 A "HO3'" H N N 68 A "H2'" H N N 69 A "HO2'" H N N 70 A "H1'" H N N 71 A H8 H N N 72 A H61 H N N 73 A H62 H N N 74 A H2 H N N 75 ALA N N N N 76 ALA CA C N S 77 ALA C C N N 78 ALA O O N N 79 ALA CB C N N 80 ALA OXT O N N 81 ALA H H N N 82 ALA H2 H N N 83 ALA HA H N N 84 ALA HB1 H N N 85 ALA HB2 H N N 86 ALA HB3 H N N 87 ALA HXT H N N 88 ARG N N N N 89 ARG CA C N S 90 ARG C C N N 91 ARG O O N N 92 ARG CB C N N 93 ARG CG C N N 94 ARG CD C N N 95 ARG NE N N N 96 ARG CZ C N N 97 ARG NH1 N N N 98 ARG NH2 N N N 99 ARG OXT O N N 100 ARG H H N N 101 ARG H2 H N N 102 ARG HA H N N 103 ARG HB2 H N N 104 ARG HB3 H N N 105 ARG HG2 H N N 106 ARG HG3 H N N 107 ARG HD2 H N N 108 ARG HD3 H N N 109 ARG HE H N N 110 ARG HH11 H N N 111 ARG HH12 H N N 112 ARG HH21 H N N 113 ARG HH22 H N N 114 ARG HXT H N N 115 ASN N N N N 116 ASN CA C N S 117 ASN C C N N 118 ASN O O N N 119 ASN CB C N N 120 ASN CG C N N 121 ASN OD1 O N N 122 ASN ND2 N N N 123 ASN OXT O N N 124 ASN H H N N 125 ASN H2 H N N 126 ASN HA H N N 127 ASN HB2 H N N 128 ASN HB3 H N N 129 ASN HD21 H N N 130 ASN HD22 H N N 131 ASN HXT H N N 132 ASP N N N N 133 ASP CA C N S 134 ASP C C N N 135 ASP O O N N 136 ASP CB C N N 137 ASP CG C N N 138 ASP OD1 O N N 139 ASP OD2 O N N 140 ASP OXT O N N 141 ASP H H N N 142 ASP H2 H N N 143 ASP HA H N N 144 ASP HB2 H N N 145 ASP HB3 H N N 146 ASP HD2 H N N 147 ASP HXT H N N 148 C OP3 O N N 149 C P P N N 150 C OP1 O N N 151 C OP2 O N N 152 C "O5'" O N N 153 C "C5'" C N N 154 C "C4'" C N R 155 C "O4'" O N N 156 C "C3'" C N S 157 C "O3'" O N N 158 C "C2'" C N R 159 C "O2'" O N N 160 C "C1'" C N R 161 C N1 N N N 162 C C2 C N N 163 C O2 O N N 164 C N3 N N N 165 C C4 C N N 166 C N4 N N N 167 C C5 C N N 168 C C6 C N N 169 C HOP3 H N N 170 C HOP2 H N N 171 C "H5'" H N N 172 C "H5''" H N N 173 C "H4'" H N N 174 C "H3'" H N N 175 C "HO3'" H N N 176 C "H2'" H N N 177 C "HO2'" H N N 178 C "H1'" H N N 179 C H41 H N N 180 C H42 H N N 181 C H5 H N N 182 C H6 H N N 183 GLN N N N N 184 GLN CA C N S 185 GLN C C N N 186 GLN O O N N 187 GLN CB C N N 188 GLN CG C N N 189 GLN CD C N N 190 GLN OE1 O N N 191 GLN NE2 N N N 192 GLN OXT O N N 193 GLN H H N N 194 GLN H2 H N N 195 GLN HA H N N 196 GLN HB2 H N N 197 GLN HB3 H N N 198 GLN HG2 H N N 199 GLN HG3 H N N 200 GLN HE21 H N N 201 GLN HE22 H N N 202 GLN HXT H N N 203 GLU N N N N 204 GLU CA C N S 205 GLU C C N N 206 GLU O O N N 207 GLU CB C N N 208 GLU CG C N N 209 GLU CD C N N 210 GLU OE1 O N N 211 GLU OE2 O N N 212 GLU OXT O N N 213 GLU H H N N 214 GLU H2 H N N 215 GLU HA H N N 216 GLU HB2 H N N 217 GLU HB3 H N N 218 GLU HG2 H N N 219 GLU HG3 H N N 220 GLU HE2 H N N 221 GLU HXT H N N 222 GLY N N N N 223 GLY CA C N N 224 GLY C C N N 225 GLY O O N N 226 GLY OXT O N N 227 GLY H H N N 228 GLY H2 H N N 229 GLY HA2 H N N 230 GLY HA3 H N N 231 GLY HXT H N N 232 HIS N N N N 233 HIS CA C N S 234 HIS C C N N 235 HIS O O N N 236 HIS CB C N N 237 HIS CG C Y N 238 HIS ND1 N Y N 239 HIS CD2 C Y N 240 HIS CE1 C Y N 241 HIS NE2 N Y N 242 HIS OXT O N N 243 HIS H H N N 244 HIS H2 H N N 245 HIS HA H N N 246 HIS HB2 H N N 247 HIS HB3 H N N 248 HIS HD1 H N N 249 HIS HD2 H N N 250 HIS HE1 H N N 251 HIS HE2 H N N 252 HIS HXT H N N 253 HOH O O N N 254 HOH H1 H N N 255 HOH H2 H N N 256 ILE N N N N 257 ILE CA C N S 258 ILE C C N N 259 ILE O O N N 260 ILE CB C N S 261 ILE CG1 C N N 262 ILE CG2 C N N 263 ILE CD1 C N N 264 ILE OXT O N N 265 ILE H H N N 266 ILE H2 H N N 267 ILE HA H N N 268 ILE HB H N N 269 ILE HG12 H N N 270 ILE HG13 H N N 271 ILE HG21 H N N 272 ILE HG22 H N N 273 ILE HG23 H N N 274 ILE HD11 H N N 275 ILE HD12 H N N 276 ILE HD13 H N N 277 ILE HXT H N N 278 LEU N N N N 279 LEU CA C N S 280 LEU C C N N 281 LEU O O N N 282 LEU CB C N N 283 LEU CG C N N 284 LEU CD1 C N N 285 LEU CD2 C N N 286 LEU OXT O N N 287 LEU H H N N 288 LEU H2 H N N 289 LEU HA H N N 290 LEU HB2 H N N 291 LEU HB3 H N N 292 LEU HG H N N 293 LEU HD11 H N N 294 LEU HD12 H N N 295 LEU HD13 H N N 296 LEU HD21 H N N 297 LEU HD22 H N N 298 LEU HD23 H N N 299 LEU HXT H N N 300 LYS N N N N 301 LYS CA C N S 302 LYS C C N N 303 LYS O O N N 304 LYS CB C N N 305 LYS CG C N N 306 LYS CD C N N 307 LYS CE C N N 308 LYS NZ N N N 309 LYS OXT O N N 310 LYS H H N N 311 LYS H2 H N N 312 LYS HA H N N 313 LYS HB2 H N N 314 LYS HB3 H N N 315 LYS HG2 H N N 316 LYS HG3 H N N 317 LYS HD2 H N N 318 LYS HD3 H N N 319 LYS HE2 H N N 320 LYS HE3 H N N 321 LYS HZ1 H N N 322 LYS HZ2 H N N 323 LYS HZ3 H N N 324 LYS HXT H N N 325 PHE N N N N 326 PHE CA C N S 327 PHE C C N N 328 PHE O O N N 329 PHE CB C N N 330 PHE CG C Y N 331 PHE CD1 C Y N 332 PHE CD2 C Y N 333 PHE CE1 C Y N 334 PHE CE2 C Y N 335 PHE CZ C Y N 336 PHE OXT O N N 337 PHE H H N N 338 PHE H2 H N N 339 PHE HA H N N 340 PHE HB2 H N N 341 PHE HB3 H N N 342 PHE HD1 H N N 343 PHE HD2 H N N 344 PHE HE1 H N N 345 PHE HE2 H N N 346 PHE HZ H N N 347 PHE HXT H N N 348 PRO N N N N 349 PRO CA C N S 350 PRO C C N N 351 PRO O O N N 352 PRO CB C N N 353 PRO CG C N N 354 PRO CD C N N 355 PRO OXT O N N 356 PRO H H N N 357 PRO HA H N N 358 PRO HB2 H N N 359 PRO HB3 H N N 360 PRO HG2 H N N 361 PRO HG3 H N N 362 PRO HD2 H N N 363 PRO HD3 H N N 364 PRO HXT H N N 365 SER N N N N 366 SER CA C N S 367 SER C C N N 368 SER O O N N 369 SER CB C N N 370 SER OG O N N 371 SER OXT O N N 372 SER H H N N 373 SER H2 H N N 374 SER HA H N N 375 SER HB2 H N N 376 SER HB3 H N N 377 SER HG H N N 378 SER HXT H N N 379 THR N N N N 380 THR CA C N S 381 THR C C N N 382 THR O O N N 383 THR CB C N R 384 THR OG1 O N N 385 THR CG2 C N N 386 THR OXT O N N 387 THR H H N N 388 THR H2 H N N 389 THR HA H N N 390 THR HB H N N 391 THR HG1 H N N 392 THR HG21 H N N 393 THR HG22 H N N 394 THR HG23 H N N 395 THR HXT H N N 396 TRP N N N N 397 TRP CA C N S 398 TRP C C N N 399 TRP O O N N 400 TRP CB C N N 401 TRP CG C Y N 402 TRP CD1 C Y N 403 TRP CD2 C Y N 404 TRP NE1 N Y N 405 TRP CE2 C Y N 406 TRP CE3 C Y N 407 TRP CZ2 C Y N 408 TRP CZ3 C Y N 409 TRP CH2 C Y N 410 TRP OXT O N N 411 TRP H H N N 412 TRP H2 H N N 413 TRP HA H N N 414 TRP HB2 H N N 415 TRP HB3 H N N 416 TRP HD1 H N N 417 TRP HE1 H N N 418 TRP HE3 H N N 419 TRP HZ2 H N N 420 TRP HZ3 H N N 421 TRP HH2 H N N 422 TRP HXT H N N 423 TYR N N N N 424 TYR CA C N S 425 TYR C C N N 426 TYR O O N N 427 TYR CB C N N 428 TYR CG C Y N 429 TYR CD1 C Y N 430 TYR CD2 C Y N 431 TYR CE1 C Y N 432 TYR CE2 C Y N 433 TYR CZ C Y N 434 TYR OH O N N 435 TYR OXT O N N 436 TYR H H N N 437 TYR H2 H N N 438 TYR HA H N N 439 TYR HB2 H N N 440 TYR HB3 H N N 441 TYR HD1 H N N 442 TYR HD2 H N N 443 TYR HE1 H N N 444 TYR HE2 H N N 445 TYR HH H N N 446 TYR HXT H N N 447 U OP3 O N N 448 U P P N N 449 U OP1 O N N 450 U OP2 O N N 451 U "O5'" O N N 452 U "C5'" C N N 453 U "C4'" C N R 454 U "O4'" O N N 455 U "C3'" C N S 456 U "O3'" O N N 457 U "C2'" C N R 458 U "O2'" O N N 459 U "C1'" C N R 460 U N1 N N N 461 U C2 C N N 462 U O2 O N N 463 U N3 N N N 464 U C4 C N N 465 U O4 O N N 466 U C5 C N N 467 U C6 C N N 468 U HOP3 H N N 469 U HOP2 H N N 470 U "H5'" H N N 471 U "H5''" H N N 472 U "H4'" H N N 473 U "H3'" H N N 474 U "HO3'" H N N 475 U "H2'" H N N 476 U "HO2'" H N N 477 U "H1'" H N N 478 U H3 H N N 479 U H5 H N N 480 U H6 H N N 481 VAL N N N N 482 VAL CA C N S 483 VAL C C N N 484 VAL O O N N 485 VAL CB C N N 486 VAL CG1 C N N 487 VAL CG2 C N N 488 VAL OXT O N N 489 VAL H H N N 490 VAL H2 H N N 491 VAL HA H N N 492 VAL HB H N N 493 VAL HG11 H N N 494 VAL HG12 H N N 495 VAL HG13 H N N 496 VAL HG21 H N N 497 VAL HG22 H N N 498 VAL HG23 H N N 499 VAL HXT H N N 500 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5MC P OP1 doub N N 1 5MC P OP2 sing N N 2 5MC P OP3 sing N N 3 5MC P "O5'" sing N N 4 5MC OP2 HOP2 sing N N 5 5MC OP3 HOP3 sing N N 6 5MC "O5'" "C5'" sing N N 7 5MC "C5'" "C4'" sing N N 8 5MC "C5'" "H5'" sing N N 9 5MC "C5'" "H5''" sing N N 10 5MC "C4'" "O4'" sing N N 11 5MC "C4'" "C3'" sing N N 12 5MC "C4'" "H4'" sing N N 13 5MC "O4'" "C1'" sing N N 14 5MC "C3'" "O3'" sing N N 15 5MC "C3'" "C2'" sing N N 16 5MC "C3'" "H3'" sing N N 17 5MC "O3'" "HO3'" sing N N 18 5MC "C2'" "O2'" sing N N 19 5MC "C2'" "C1'" sing N N 20 5MC "C2'" "H2'" sing N N 21 5MC "O2'" "HO2'" sing N N 22 5MC "C1'" N1 sing N N 23 5MC "C1'" "H1'" sing N N 24 5MC N1 C2 sing N N 25 5MC N1 C6 sing N N 26 5MC C2 O2 doub N N 27 5MC C2 N3 sing N N 28 5MC N3 C4 doub N N 29 5MC C4 N4 sing N N 30 5MC C4 C5 sing N N 31 5MC N4 HN41 sing N N 32 5MC N4 HN42 sing N N 33 5MC C5 C6 doub N N 34 5MC C5 CM5 sing N N 35 5MC C6 H6 sing N N 36 5MC CM5 HM51 sing N N 37 5MC CM5 HM52 sing N N 38 5MC CM5 HM53 sing N N 39 A OP3 P sing N N 40 A OP3 HOP3 sing N N 41 A P OP1 doub N N 42 A P OP2 sing N N 43 A P "O5'" sing N N 44 A OP2 HOP2 sing N N 45 A "O5'" "C5'" sing N N 46 A "C5'" "C4'" sing N N 47 A "C5'" "H5'" sing N N 48 A "C5'" "H5''" sing N N 49 A "C4'" "O4'" sing N N 50 A "C4'" "C3'" sing N N 51 A "C4'" "H4'" sing N N 52 A "O4'" "C1'" sing N N 53 A "C3'" "O3'" sing N N 54 A "C3'" "C2'" sing N N 55 A "C3'" "H3'" sing N N 56 A "O3'" "HO3'" sing N N 57 A "C2'" "O2'" sing N N 58 A "C2'" "C1'" sing N N 59 A "C2'" "H2'" sing N N 60 A "O2'" "HO2'" sing N N 61 A "C1'" N9 sing N N 62 A "C1'" "H1'" sing N N 63 A N9 C8 sing Y N 64 A N9 C4 sing Y N 65 A C8 N7 doub Y N 66 A C8 H8 sing N N 67 A N7 C5 sing Y N 68 A C5 C6 sing Y N 69 A C5 C4 doub Y N 70 A C6 N6 sing N N 71 A C6 N1 doub Y N 72 A N6 H61 sing N N 73 A N6 H62 sing N N 74 A N1 C2 sing Y N 75 A C2 N3 doub Y N 76 A C2 H2 sing N N 77 A N3 C4 sing Y N 78 ALA N CA sing N N 79 ALA N H sing N N 80 ALA N H2 sing N N 81 ALA CA C sing N N 82 ALA CA CB sing N N 83 ALA CA HA sing N N 84 ALA C O doub N N 85 ALA C OXT sing N N 86 ALA CB HB1 sing N N 87 ALA CB HB2 sing N N 88 ALA CB HB3 sing N N 89 ALA OXT HXT sing N N 90 ARG N CA sing N N 91 ARG N H sing N N 92 ARG N H2 sing N N 93 ARG CA C sing N N 94 ARG CA CB sing N N 95 ARG CA HA sing N N 96 ARG C O doub N N 97 ARG C OXT sing N N 98 ARG CB CG sing N N 99 ARG CB HB2 sing N N 100 ARG CB HB3 sing N N 101 ARG CG CD sing N N 102 ARG CG HG2 sing N N 103 ARG CG HG3 sing N N 104 ARG CD NE sing N N 105 ARG CD HD2 sing N N 106 ARG CD HD3 sing N N 107 ARG NE CZ sing N N 108 ARG NE HE sing N N 109 ARG CZ NH1 sing N N 110 ARG CZ NH2 doub N N 111 ARG NH1 HH11 sing N N 112 ARG NH1 HH12 sing N N 113 ARG NH2 HH21 sing N N 114 ARG NH2 HH22 sing N N 115 ARG OXT HXT sing N N 116 ASN N CA sing N N 117 ASN N H sing N N 118 ASN N H2 sing N N 119 ASN CA C sing N N 120 ASN CA CB sing N N 121 ASN CA HA sing N N 122 ASN C O doub N N 123 ASN C OXT sing N N 124 ASN CB CG sing N N 125 ASN CB HB2 sing N N 126 ASN CB HB3 sing N N 127 ASN CG OD1 doub N N 128 ASN CG ND2 sing N N 129 ASN ND2 HD21 sing N N 130 ASN ND2 HD22 sing N N 131 ASN OXT HXT sing N N 132 ASP N CA sing N N 133 ASP N H sing N N 134 ASP N H2 sing N N 135 ASP CA C sing N N 136 ASP CA CB sing N N 137 ASP CA HA sing N N 138 ASP C O doub N N 139 ASP C OXT sing N N 140 ASP CB CG sing N N 141 ASP CB HB2 sing N N 142 ASP CB HB3 sing N N 143 ASP CG OD1 doub N N 144 ASP CG OD2 sing N N 145 ASP OD2 HD2 sing N N 146 ASP OXT HXT sing N N 147 C OP3 P sing N N 148 C OP3 HOP3 sing N N 149 C P OP1 doub N N 150 C P OP2 sing N N 151 C P "O5'" sing N N 152 C OP2 HOP2 sing N N 153 C "O5'" "C5'" sing N N 154 C "C5'" "C4'" sing N N 155 C "C5'" "H5'" sing N N 156 C "C5'" "H5''" sing N N 157 C "C4'" "O4'" sing N N 158 C "C4'" "C3'" sing N N 159 C "C4'" "H4'" sing N N 160 C "O4'" "C1'" sing N N 161 C "C3'" "O3'" sing N N 162 C "C3'" "C2'" sing N N 163 C "C3'" "H3'" sing N N 164 C "O3'" "HO3'" sing N N 165 C "C2'" "O2'" sing N N 166 C "C2'" "C1'" sing N N 167 C "C2'" "H2'" sing N N 168 C "O2'" "HO2'" sing N N 169 C "C1'" N1 sing N N 170 C "C1'" "H1'" sing N N 171 C N1 C2 sing N N 172 C N1 C6 sing N N 173 C C2 O2 doub N N 174 C C2 N3 sing N N 175 C N3 C4 doub N N 176 C C4 N4 sing N N 177 C C4 C5 sing N N 178 C N4 H41 sing N N 179 C N4 H42 sing N N 180 C C5 C6 doub N N 181 C C5 H5 sing N N 182 C C6 H6 sing N N 183 GLN N CA sing N N 184 GLN N H sing N N 185 GLN N H2 sing N N 186 GLN CA C sing N N 187 GLN CA CB sing N N 188 GLN CA HA sing N N 189 GLN C O doub N N 190 GLN C OXT sing N N 191 GLN CB CG sing N N 192 GLN CB HB2 sing N N 193 GLN CB HB3 sing N N 194 GLN CG CD sing N N 195 GLN CG HG2 sing N N 196 GLN CG HG3 sing N N 197 GLN CD OE1 doub N N 198 GLN CD NE2 sing N N 199 GLN NE2 HE21 sing N N 200 GLN NE2 HE22 sing N N 201 GLN OXT HXT sing N N 202 GLU N CA sing N N 203 GLU N H sing N N 204 GLU N H2 sing N N 205 GLU CA C sing N N 206 GLU CA CB sing N N 207 GLU CA HA sing N N 208 GLU C O doub N N 209 GLU C OXT sing N N 210 GLU CB CG sing N N 211 GLU CB HB2 sing N N 212 GLU CB HB3 sing N N 213 GLU CG CD sing N N 214 GLU CG HG2 sing N N 215 GLU CG HG3 sing N N 216 GLU CD OE1 doub N N 217 GLU CD OE2 sing N N 218 GLU OE2 HE2 sing N N 219 GLU OXT HXT sing N N 220 GLY N CA sing N N 221 GLY N H sing N N 222 GLY N H2 sing N N 223 GLY CA C sing N N 224 GLY CA HA2 sing N N 225 GLY CA HA3 sing N N 226 GLY C O doub N N 227 GLY C OXT sing N N 228 GLY OXT HXT sing N N 229 HIS N CA sing N N 230 HIS N H sing N N 231 HIS N H2 sing N N 232 HIS CA C sing N N 233 HIS CA CB sing N N 234 HIS CA HA sing N N 235 HIS C O doub N N 236 HIS C OXT sing N N 237 HIS CB CG sing N N 238 HIS CB HB2 sing N N 239 HIS CB HB3 sing N N 240 HIS CG ND1 sing Y N 241 HIS CG CD2 doub Y N 242 HIS ND1 CE1 doub Y N 243 HIS ND1 HD1 sing N N 244 HIS CD2 NE2 sing Y N 245 HIS CD2 HD2 sing N N 246 HIS CE1 NE2 sing Y N 247 HIS CE1 HE1 sing N N 248 HIS NE2 HE2 sing N N 249 HIS OXT HXT sing N N 250 HOH O H1 sing N N 251 HOH O H2 sing N N 252 ILE N CA sing N N 253 ILE N H sing N N 254 ILE N H2 sing N N 255 ILE CA C sing N N 256 ILE CA CB sing N N 257 ILE CA HA sing N N 258 ILE C O doub N N 259 ILE C OXT sing N N 260 ILE CB CG1 sing N N 261 ILE CB CG2 sing N N 262 ILE CB HB sing N N 263 ILE CG1 CD1 sing N N 264 ILE CG1 HG12 sing N N 265 ILE CG1 HG13 sing N N 266 ILE CG2 HG21 sing N N 267 ILE CG2 HG22 sing N N 268 ILE CG2 HG23 sing N N 269 ILE CD1 HD11 sing N N 270 ILE CD1 HD12 sing N N 271 ILE CD1 HD13 sing N N 272 ILE OXT HXT sing N N 273 LEU N CA sing N N 274 LEU N H sing N N 275 LEU N H2 sing N N 276 LEU CA C sing N N 277 LEU CA CB sing N N 278 LEU CA HA sing N N 279 LEU C O doub N N 280 LEU C OXT sing N N 281 LEU CB CG sing N N 282 LEU CB HB2 sing N N 283 LEU CB HB3 sing N N 284 LEU CG CD1 sing N N 285 LEU CG CD2 sing N N 286 LEU CG HG sing N N 287 LEU CD1 HD11 sing N N 288 LEU CD1 HD12 sing N N 289 LEU CD1 HD13 sing N N 290 LEU CD2 HD21 sing N N 291 LEU CD2 HD22 sing N N 292 LEU CD2 HD23 sing N N 293 LEU OXT HXT sing N N 294 LYS N CA sing N N 295 LYS N H sing N N 296 LYS N H2 sing N N 297 LYS CA C sing N N 298 LYS CA CB sing N N 299 LYS CA HA sing N N 300 LYS C O doub N N 301 LYS C OXT sing N N 302 LYS CB CG sing N N 303 LYS CB HB2 sing N N 304 LYS CB HB3 sing N N 305 LYS CG CD sing N N 306 LYS CG HG2 sing N N 307 LYS CG HG3 sing N N 308 LYS CD CE sing N N 309 LYS CD HD2 sing N N 310 LYS CD HD3 sing N N 311 LYS CE NZ sing N N 312 LYS CE HE2 sing N N 313 LYS CE HE3 sing N N 314 LYS NZ HZ1 sing N N 315 LYS NZ HZ2 sing N N 316 LYS NZ HZ3 sing N N 317 LYS OXT HXT sing N N 318 PHE N CA sing N N 319 PHE N H sing N N 320 PHE N H2 sing N N 321 PHE CA C sing N N 322 PHE CA CB sing N N 323 PHE CA HA sing N N 324 PHE C O doub N N 325 PHE C OXT sing N N 326 PHE CB CG sing N N 327 PHE CB HB2 sing N N 328 PHE CB HB3 sing N N 329 PHE CG CD1 doub Y N 330 PHE CG CD2 sing Y N 331 PHE CD1 CE1 sing Y N 332 PHE CD1 HD1 sing N N 333 PHE CD2 CE2 doub Y N 334 PHE CD2 HD2 sing N N 335 PHE CE1 CZ doub Y N 336 PHE CE1 HE1 sing N N 337 PHE CE2 CZ sing Y N 338 PHE CE2 HE2 sing N N 339 PHE CZ HZ sing N N 340 PHE OXT HXT sing N N 341 PRO N CA sing N N 342 PRO N CD sing N N 343 PRO N H sing N N 344 PRO CA C sing N N 345 PRO CA CB sing N N 346 PRO CA HA sing N N 347 PRO C O doub N N 348 PRO C OXT sing N N 349 PRO CB CG sing N N 350 PRO CB HB2 sing N N 351 PRO CB HB3 sing N N 352 PRO CG CD sing N N 353 PRO CG HG2 sing N N 354 PRO CG HG3 sing N N 355 PRO CD HD2 sing N N 356 PRO CD HD3 sing N N 357 PRO OXT HXT sing N N 358 SER N CA sing N N 359 SER N H sing N N 360 SER N H2 sing N N 361 SER CA C sing N N 362 SER CA CB sing N N 363 SER CA HA sing N N 364 SER C O doub N N 365 SER C OXT sing N N 366 SER CB OG sing N N 367 SER CB HB2 sing N N 368 SER CB HB3 sing N N 369 SER OG HG sing N N 370 SER OXT HXT sing N N 371 THR N CA sing N N 372 THR N H sing N N 373 THR N H2 sing N N 374 THR CA C sing N N 375 THR CA CB sing N N 376 THR CA HA sing N N 377 THR C O doub N N 378 THR C OXT sing N N 379 THR CB OG1 sing N N 380 THR CB CG2 sing N N 381 THR CB HB sing N N 382 THR OG1 HG1 sing N N 383 THR CG2 HG21 sing N N 384 THR CG2 HG22 sing N N 385 THR CG2 HG23 sing N N 386 THR OXT HXT sing N N 387 TRP N CA sing N N 388 TRP N H sing N N 389 TRP N H2 sing N N 390 TRP CA C sing N N 391 TRP CA CB sing N N 392 TRP CA HA sing N N 393 TRP C O doub N N 394 TRP C OXT sing N N 395 TRP CB CG sing N N 396 TRP CB HB2 sing N N 397 TRP CB HB3 sing N N 398 TRP CG CD1 doub Y N 399 TRP CG CD2 sing Y N 400 TRP CD1 NE1 sing Y N 401 TRP CD1 HD1 sing N N 402 TRP CD2 CE2 doub Y N 403 TRP CD2 CE3 sing Y N 404 TRP NE1 CE2 sing Y N 405 TRP NE1 HE1 sing N N 406 TRP CE2 CZ2 sing Y N 407 TRP CE3 CZ3 doub Y N 408 TRP CE3 HE3 sing N N 409 TRP CZ2 CH2 doub Y N 410 TRP CZ2 HZ2 sing N N 411 TRP CZ3 CH2 sing Y N 412 TRP CZ3 HZ3 sing N N 413 TRP CH2 HH2 sing N N 414 TRP OXT HXT sing N N 415 TYR N CA sing N N 416 TYR N H sing N N 417 TYR N H2 sing N N 418 TYR CA C sing N N 419 TYR CA CB sing N N 420 TYR CA HA sing N N 421 TYR C O doub N N 422 TYR C OXT sing N N 423 TYR CB CG sing N N 424 TYR CB HB2 sing N N 425 TYR CB HB3 sing N N 426 TYR CG CD1 doub Y N 427 TYR CG CD2 sing Y N 428 TYR CD1 CE1 sing Y N 429 TYR CD1 HD1 sing N N 430 TYR CD2 CE2 doub Y N 431 TYR CD2 HD2 sing N N 432 TYR CE1 CZ doub Y N 433 TYR CE1 HE1 sing N N 434 TYR CE2 CZ sing Y N 435 TYR CE2 HE2 sing N N 436 TYR CZ OH sing N N 437 TYR OH HH sing N N 438 TYR OXT HXT sing N N 439 U OP3 P sing N N 440 U OP3 HOP3 sing N N 441 U P OP1 doub N N 442 U P OP2 sing N N 443 U P "O5'" sing N N 444 U OP2 HOP2 sing N N 445 U "O5'" "C5'" sing N N 446 U "C5'" "C4'" sing N N 447 U "C5'" "H5'" sing N N 448 U "C5'" "H5''" sing N N 449 U "C4'" "O4'" sing N N 450 U "C4'" "C3'" sing N N 451 U "C4'" "H4'" sing N N 452 U "O4'" "C1'" sing N N 453 U "C3'" "O3'" sing N N 454 U "C3'" "C2'" sing N N 455 U "C3'" "H3'" sing N N 456 U "O3'" "HO3'" sing N N 457 U "C2'" "O2'" sing N N 458 U "C2'" "C1'" sing N N 459 U "C2'" "H2'" sing N N 460 U "O2'" "HO2'" sing N N 461 U "C1'" N1 sing N N 462 U "C1'" "H1'" sing N N 463 U N1 C2 sing N N 464 U N1 C6 sing N N 465 U C2 O2 doub N N 466 U C2 N3 sing N N 467 U N3 C4 sing N N 468 U N3 H3 sing N N 469 U C4 O4 doub N N 470 U C4 C5 sing N N 471 U C5 C6 doub N N 472 U C5 H5 sing N N 473 U C6 H6 sing N N 474 VAL N CA sing N N 475 VAL N H sing N N 476 VAL N H2 sing N N 477 VAL CA C sing N N 478 VAL CA CB sing N N 479 VAL CA HA sing N N 480 VAL C O doub N N 481 VAL C OXT sing N N 482 VAL CB CG1 sing N N 483 VAL CB CG2 sing N N 484 VAL CB HB sing N N 485 VAL CG1 HG11 sing N N 486 VAL CG1 HG12 sing N N 487 VAL CG1 HG13 sing N N 488 VAL CG2 HG21 sing N N 489 VAL CG2 HG22 sing N N 490 VAL CG2 HG23 sing N N 491 VAL OXT HXT sing N N 492 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Natural Science Foundation of China' China 91640102 1 'Chinese Academy of Sciences' China XDB08010202 2 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 5MC _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 5MC _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3PF5 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'fluorescence resonance energy transfer' _pdbx_struct_assembly_auth_evidence.details ? #