HEADER TRANSPORT PROTEIN 05-JUL-18 6A80 TITLE CRYSTAL STRUCTURE OF PUTATIVE AMINO ACID BINDING PERIPLASMIC ABC TITLE 2 TRANSPORTER PROTEIN FROM CANDIDATUS LIBERIBACTER ASIATICUS IN COMPLEX TITLE 3 WITH CYSTINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE AMINO ACID-BINDING PERIPLASMIC ABC TRANSPORTER COMPND 3 PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LIBERIBACTER ASIATICUS (STRAIN PSY62); SOURCE 3 ORGANISM_TAXID: 537021; SOURCE 4 STRAIN: PSY62; SOURCE 5 GENE: CLIBASIA_05070; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28C KEYWDS PUTATIVE AMINO ACID BINDING, CANDIDATUS LIBERIBACTER ASIATICUS, KEYWDS 2 PERIPLASMIC DOMAIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.KUMAR,P.KESARI,D.K.GHOSH,P.KUMAR,A.K.SHARMA REVDAT 3 22-NOV-23 6A80 1 REMARK REVDAT 2 18-SEP-19 6A80 1 JRNL REVDAT 1 12-JUN-19 6A80 0 JRNL AUTH P.KUMAR,P.KESARI,S.KOKANE,D.K.GHOSH,P.KUMAR,A.K.SHARMA JRNL TITL CRYSTAL STRUCTURES OF A PUTATIVE PERIPLASMIC CYSTINE-BINDING JRNL TITL 2 PROTEIN FROM CANDIDATUS LIBERIBACTER ASIATICUS: INSIGHTS JRNL TITL 3 INTO AN ADAPTED MECHANISM OF LIGAND BINDING. JRNL REF FEBS J. V. 286 3450 2019 JRNL REFN ISSN 1742-464X JRNL PMID 31063259 JRNL DOI 10.1111/FEBS.14921 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0218 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 67009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3614 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4898 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 270 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3760 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 156 REMARK 3 SOLVENT ATOMS : 292 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -1.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.178 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4259 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5732 ; 2.091 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ; 9.567 ; 5.029 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;29.434 ;23.216 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 750 ;15.320 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;21.140 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 632 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3241 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2050 ; 2.681 ; 2.812 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2587 ; 3.390 ; 4.174 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2209 ; 4.144 ; 3.291 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6576 ; 8.095 ;40.846 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6A80 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1300008297. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976251 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JUNE 1, 2017 REMARK 200 DATA SCALING SOFTWARE : AUTOPROC 1.1.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70624 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 70.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.68300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA 22 (2018-05-05) REMARK 200 STARTING MODEL: 2YLN REMARK 200 REMARK 200 REMARK: CUBIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULPHATE, 0.1M SODIUM REMARK 280 ACETATE TRIHYDRATE, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.08000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.12500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.12500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.08000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 ARG A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 465 ASP A 6 REMARK 465 GLN A 7 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 ARG B 3 REMARK 465 THR B 4 REMARK 465 GLU B 5 REMARK 465 ASP B 6 REMARK 465 GLN B 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 EDO A 302 O HOH A 401 1.87 REMARK 500 O CYS A 319 O HOH A 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 157 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 157 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 163 CB - CG - OD1 ANGL. DEV. = 8.8 DEGREES REMARK 500 ASP A 163 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 225 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 226 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 226 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 CYS B 212 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 CYS B 239 N - CA - CB ANGL. DEV. = 10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 22 109.24 -161.57 REMARK 500 ASP A 116 -0.24 79.94 REMARK 500 CYS A 239 -167.38 -113.82 REMARK 500 SER B 22 112.00 -163.66 REMARK 500 CYS B 239 -160.89 -118.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYS A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYS A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYS B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYS B 311 DBREF 6A80 A 2 241 UNP C6XGT2 C6XGT2_LIBAP 35 274 DBREF 6A80 B 2 241 UNP C6XGT2 C6XGT2_LIBAP 35 274 SEQADV 6A80 MET A 1 UNP C6XGT2 INITIATING METHIONINE SEQADV 6A80 MET B 1 UNP C6XGT2 INITIATING METHIONINE SEQRES 1 A 241 MET PHE ARG THR GLU ASP GLN SER ALA LEU ARG VAL GLY SEQRES 2 A 241 THR ASP GLY ILE TYR PRO PRO HIS SER PHE HIS ALA GLN SEQRES 3 A 241 ASP GLY ARG GLY GLU LEU THR GLY PHE ASP ILE ASP LEU SEQRES 4 A 241 ILE LYS GLU VAL ALA HIS ARG LEU ASN LEU LYS VAL GLU SEQRES 5 A 241 PHE PHE GLU THR ALA VAL SER GLY LEU ILE THR GLY LEU SEQRES 6 A 241 ASP THR ASN ARG TYR ASP VAL LEU VAL ASN VAL ALA ILE SEQRES 7 A 241 THR PRO GLU ARG GLN LYS LYS TYR ASP PHE SER ILE PRO SEQRES 8 A 241 TYR ILE ALA HIS ARG VAL LEU LEU VAL VAL ARG SER ASP SEQRES 9 A 241 GLN GLN ASP ILE ARG SER PHE LYS ASP LEU THR ASP LYS SEQRES 10 A 241 THR VAL ALA GLN ILE LEU GLY THR ASP LEU SER ARG PHE SEQRES 11 A 241 ALA LYS GLU LEU LYS SER HIS LEU VAL PHE SER HIS ASN SEQRES 12 A 241 PHE GLU GLN SER LEU GLN LEU LEU LEU SER LYS ARG THR SEQRES 13 A 241 ASP ALA THR MET ILE PRO ASP ILE PRO PHE PHE ASN PHE SEQRES 14 A 241 LEU GLU ARG ARG PRO HIS ASP GLY ASN LEU PHE LYS ILE SEQRES 15 A 241 ALA ASP ARG MET LYS ASP ASN SER ALA VAL ALA PHE MET SEQRES 16 A 241 MET ARG LYS GLY ASN ASN LYS LEU THR ARG SER ILE ASN SEQRES 17 A 241 GLU ILE LEU CYS ALA ILE HIS LEU ASP GLY THR TYR LYS SEQRES 18 A 241 LYS ILE PHE ASP ARG TYR PHE ASP LYS ASN ILE ILE SER SEQRES 19 A 241 SER VAL PRO GLY CYS SER SER SEQRES 1 B 241 MET PHE ARG THR GLU ASP GLN SER ALA LEU ARG VAL GLY SEQRES 2 B 241 THR ASP GLY ILE TYR PRO PRO HIS SER PHE HIS ALA GLN SEQRES 3 B 241 ASP GLY ARG GLY GLU LEU THR GLY PHE ASP ILE ASP LEU SEQRES 4 B 241 ILE LYS GLU VAL ALA HIS ARG LEU ASN LEU LYS VAL GLU SEQRES 5 B 241 PHE PHE GLU THR ALA VAL SER GLY LEU ILE THR GLY LEU SEQRES 6 B 241 ASP THR ASN ARG TYR ASP VAL LEU VAL ASN VAL ALA ILE SEQRES 7 B 241 THR PRO GLU ARG GLN LYS LYS TYR ASP PHE SER ILE PRO SEQRES 8 B 241 TYR ILE ALA HIS ARG VAL LEU LEU VAL VAL ARG SER ASP SEQRES 9 B 241 GLN GLN ASP ILE ARG SER PHE LYS ASP LEU THR ASP LYS SEQRES 10 B 241 THR VAL ALA GLN ILE LEU GLY THR ASP LEU SER ARG PHE SEQRES 11 B 241 ALA LYS GLU LEU LYS SER HIS LEU VAL PHE SER HIS ASN SEQRES 12 B 241 PHE GLU GLN SER LEU GLN LEU LEU LEU SER LYS ARG THR SEQRES 13 B 241 ASP ALA THR MET ILE PRO ASP ILE PRO PHE PHE ASN PHE SEQRES 14 B 241 LEU GLU ARG ARG PRO HIS ASP GLY ASN LEU PHE LYS ILE SEQRES 15 B 241 ALA ASP ARG MET LYS ASP ASN SER ALA VAL ALA PHE MET SEQRES 16 B 241 MET ARG LYS GLY ASN ASN LYS LEU THR ARG SER ILE ASN SEQRES 17 B 241 GLU ILE LEU CYS ALA ILE HIS LEU ASP GLY THR TYR LYS SEQRES 18 B 241 LYS ILE PHE ASP ARG TYR PHE ASP LYS ASN ILE ILE SER SEQRES 19 B 241 SER VAL PRO GLY CYS SER SER HET EDO A 301 4 HET EDO A 302 4 HET GOL A 303 6 HET TRS A 304 8 HET ACT A 305 4 HET ACT A 306 4 HET ACT A 307 4 HET ACT A 308 4 HET ACT A 309 4 HET EDO A 310 4 HET EDO A 311 4 HET EDO A 312 4 HET EDO A 313 4 HET EDO A 314 4 HET GOL A 315 6 HET GOL A 316 6 HET EDO A 317 4 HET EDO A 318 4 HET CYS A 319 14 HET CYS A 320 14 HET EDO A 321 4 HET EDO A 322 4 HET EDO B 301 4 HET ACT B 302 4 HET EDO B 303 4 HET EDO B 304 4 HET EDO B 305 4 HET EDO B 306 4 HET EDO B 307 4 HET GOL B 308 6 HET EDO B 309 4 HET CYS B 310 14 HET CYS B 311 14 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM ACT ACETATE ION HETNAM CYS CYSTEINE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 3 EDO 18(C2 H6 O2) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 6 TRS C4 H12 N O3 1+ FORMUL 7 ACT 6(C2 H3 O2 1-) FORMUL 21 CYS 4(C3 H7 N O2 S) FORMUL 36 HOH *292(H2 O) HELIX 1 AA1 ALA A 25 ARG A 29 1 5 HELIX 2 AA2 GLY A 34 LEU A 47 1 14 HELIX 3 AA3 ALA A 57 THR A 67 1 11 HELIX 4 AA4 THR A 79 LYS A 85 1 7 HELIX 5 AA5 SER A 110 THR A 115 5 6 HELIX 6 AA6 THR A 125 LEU A 134 1 10 HELIX 7 AA7 ASN A 143 SER A 153 1 11 HELIX 8 AA8 ASP A 163 ARG A 173 1 11 HELIX 9 AA9 PRO A 174 ASN A 178 5 5 HELIX 10 AB1 ASN A 200 ASP A 217 1 18 HELIX 11 AB2 GLY A 218 PHE A 228 1 11 HELIX 12 AB3 GLY B 34 LEU B 47 1 14 HELIX 13 AB4 ALA B 57 THR B 67 1 11 HELIX 14 AB5 THR B 79 LYS B 85 1 7 HELIX 15 AB6 SER B 110 THR B 115 5 6 HELIX 16 AB7 THR B 125 LEU B 134 1 10 HELIX 17 AB8 ASN B 143 SER B 153 1 11 HELIX 18 AB9 ASP B 163 ARG B 173 1 11 HELIX 19 AC1 ASP B 176 ASN B 178 5 3 HELIX 20 AC2 ASN B 200 ASP B 217 1 18 HELIX 21 AC3 GLY B 218 PHE B 228 1 11 SHEET 1 AA1 5 LYS A 50 GLU A 55 0 SHEET 2 AA1 5 ALA A 9 THR A 14 1 N LEU A 10 O LYS A 50 SHEET 3 AA1 5 VAL A 72 ALA A 77 1 O VAL A 72 N GLY A 13 SHEET 4 AA1 5 SER A 190 ARG A 197 -1 O MET A 195 N LEU A 73 SHEET 5 AA1 5 TYR A 86 PHE A 88 -1 N ASP A 87 O MET A 196 SHEET 1 AA2 5 LYS A 50 GLU A 55 0 SHEET 2 AA2 5 ALA A 9 THR A 14 1 N LEU A 10 O LYS A 50 SHEET 3 AA2 5 VAL A 72 ALA A 77 1 O VAL A 72 N GLY A 13 SHEET 4 AA2 5 SER A 190 ARG A 197 -1 O MET A 195 N LEU A 73 SHEET 5 AA2 5 ILE A 93 HIS A 95 -1 N HIS A 95 O SER A 190 SHEET 1 AA3 3 ILE A 17 TYR A 18 0 SHEET 2 AA3 3 SER A 22 HIS A 24 -1 O SER A 22 N TYR A 18 SHEET 3 AA3 3 LEU A 32 THR A 33 -1 O THR A 33 N PHE A 23 SHEET 1 AA4 5 HIS A 137 SER A 141 0 SHEET 2 AA4 5 THR A 118 ILE A 122 1 N VAL A 119 O HIS A 137 SHEET 3 AA4 5 ALA A 158 PRO A 162 1 O ALA A 158 N ALA A 120 SHEET 4 AA4 5 VAL A 97 ARG A 102 -1 N VAL A 100 O THR A 159 SHEET 5 AA4 5 PHE A 180 ARG A 185 -1 O ASP A 184 N LEU A 99 SHEET 1 AA5 5 LYS B 50 GLU B 55 0 SHEET 2 AA5 5 ALA B 9 THR B 14 1 N LEU B 10 O LYS B 50 SHEET 3 AA5 5 VAL B 72 ALA B 77 1 O VAL B 72 N GLY B 13 SHEET 4 AA5 5 SER B 190 ARG B 197 -1 O ALA B 193 N VAL B 76 SHEET 5 AA5 5 TYR B 86 PHE B 88 -1 N ASP B 87 O MET B 196 SHEET 1 AA6 5 LYS B 50 GLU B 55 0 SHEET 2 AA6 5 ALA B 9 THR B 14 1 N LEU B 10 O LYS B 50 SHEET 3 AA6 5 VAL B 72 ALA B 77 1 O VAL B 72 N GLY B 13 SHEET 4 AA6 5 SER B 190 ARG B 197 -1 O ALA B 193 N VAL B 76 SHEET 5 AA6 5 ILE B 93 HIS B 95 -1 N HIS B 95 O SER B 190 SHEET 1 AA7 3 ILE B 17 TYR B 18 0 SHEET 2 AA7 3 SER B 22 HIS B 24 -1 O SER B 22 N TYR B 18 SHEET 3 AA7 3 LEU B 32 THR B 33 -1 O THR B 33 N PHE B 23 SHEET 1 AA8 3 THR B 159 PRO B 162 0 SHEET 2 AA8 3 VAL B 97 ARG B 102 -1 N LEU B 98 O ILE B 161 SHEET 3 AA8 3 PHE B 180 ARG B 185 -1 O ASP B 184 N LEU B 99 SHEET 1 AA9 2 THR B 118 ILE B 122 0 SHEET 2 AA9 2 HIS B 137 SER B 141 1 O SER B 141 N GLN B 121 SSBOND 1 CYS A 212 CYS A 239 1555 1555 2.07 SSBOND 2 CYS B 212 CYS B 239 1555 1555 2.22 CISPEP 1 PRO A 19 PRO A 20 0 1.77 CISPEP 2 PRO B 19 PRO B 20 0 6.07 SITE 1 AC1 3 ILE A 17 ASN A 143 GLU A 145 SITE 1 AC2 7 ALA A 57 VAL A 58 SER A 59 ILE A 122 SITE 2 AC2 7 LEU A 123 SER A 141 HOH A 401 SITE 1 AC3 6 GLU A 171 ASP A 225 PHE A 228 ASP A 229 SITE 2 AC3 6 HOH A 413 HOH A 453 SITE 1 AC4 5 ALA A 25 GLN A 26 ASP A 27 LYS A 112 SITE 2 AC4 5 HOH A 429 SITE 1 AC5 6 ASP A 15 ILE A 17 LYS A 132 HIS A 142 SITE 2 AC5 6 HOH A 415 HOH A 475 SITE 1 AC6 3 LYS A 221 ASP A 225 SER A 235 SITE 1 AC7 2 LYS A 222 ARG A 226 SITE 1 AC8 4 ARG A 173 PRO A 174 HIS A 175 ASP B 104 SITE 1 AC9 5 LYS A 230 ILE A 232 SER A 234 HOH A 519 SITE 2 AC9 5 HOH A 529 SITE 1 AD1 4 HIS A 24 GLU A 55 LYS A 132 PHE A 140 SITE 1 AD2 5 THR A 14 ASP A 15 ASN A 75 EDO A 314 SITE 2 AD2 5 HOH A 412 SITE 1 AD3 4 PHE A 167 ARG A 185 HOH A 431 ASN B 68 SITE 1 AD4 6 HIS A 24 GLU A 31 LEU A 32 GLU A 55 SITE 2 AD4 6 PHE A 140 HOH A 416 SITE 1 AD5 8 TYR A 18 ASN A 75 PHE A 144 EDO A 311 SITE 2 AD5 8 CYS A 319 HOH A 404 HOH A 439 HOH A 528 SITE 1 AD6 3 ARG A 185 GOL A 316 HOH A 445 SITE 1 AD7 7 ASN A 231 GOL A 315 HOH A 445 ASN B 68 SITE 2 AD7 7 ARG B 197 LYS B 198 ASN B 200 SITE 1 AD8 4 ASN A 201 HOH A 434 ASN B 201 ARG B 205 SITE 1 AD9 3 PHE A 140 GLN A 146 ARG A 155 SITE 1 AE1 11 ALA A 77 ARG A 82 HIS A 95 THR A 125 SITE 2 AE1 11 ASP A 126 LEU A 127 EDO A 314 CYS A 320 SITE 3 AE1 11 HOH A 402 HOH A 439 HOH A 507 SITE 1 AE2 9 LEU A 61 ILE A 62 ARG A 82 GLY A 124 SITE 2 AE2 9 THR A 125 ASP A 126 CYS A 319 HOH A 404 SITE 3 AE2 9 HOH A 412 SITE 1 AE3 5 SER A 241 HOH A 521 ASP B 126 MET B 186 SITE 2 AE3 5 HOH B 494 SITE 1 AE4 7 PRO A 19 PHE A 23 ASN A 168 ARG A 172 SITE 2 AE4 7 HOH A 429 HOH A 440 HOH A 482 SITE 1 AE5 4 ASP A 126 SER B 240 SER B 241 HOH B 431 SITE 1 AE6 4 ASN A 201 ARG A 205 GLY B 199 ASN B 201 SITE 1 AE7 8 ASN B 75 PHE B 144 EDO B 304 CYS B 310 SITE 2 AE7 8 CYS B 311 HOH B 425 HOH B 481 HOH B 499 SITE 1 AE8 6 THR B 14 ASP B 15 ASN B 75 EDO B 303 SITE 2 AE8 6 HOH B 418 HOH B 443 SITE 1 AE9 9 SER A 103 PHE A 180 THR B 56 GLY B 60 SITE 2 AE9 9 THR B 63 GLY B 64 THR B 67 ARG B 69 SITE 3 AE9 9 EDO B 307 SITE 1 AF1 3 GLU B 31 LEU B 32 ARG B 155 SITE 1 AF2 5 SER A 103 ASN A 178 THR B 56 ALA B 57 SITE 2 AF2 5 EDO B 305 SITE 1 AF3 7 ASN A 189 HOH A 408 SER B 235 VAL B 236 SITE 2 AF3 7 PRO B 237 HOH B 402 HOH B 406 SITE 1 AF4 8 ILE B 17 PRO B 19 HIS B 137 ASN B 143 SITE 2 AF4 8 GLU B 145 HOH B 403 HOH B 407 HOH B 436 SITE 1 AF5 13 VAL B 76 ALA B 77 ARG B 82 HIS B 95 SITE 2 AF5 13 THR B 125 ASP B 126 LEU B 127 EDO B 303 SITE 3 AF5 13 CYS B 311 HOH B 414 HOH B 493 HOH B 494 SITE 4 AF5 13 HOH B 499 SITE 1 AF6 9 VAL B 58 ARG B 82 GLY B 124 THR B 125 SITE 2 AF6 9 ASP B 126 EDO B 303 CYS B 310 HOH B 425 SITE 3 AF6 9 HOH B 462 CRYST1 46.160 86.780 122.250 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021664 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011523 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008180 0.00000