HEADER DNA 06-JUL-18 6A85 TITLE CRYSTAL STRUCTURE OF A NOVEL DNA QUADRUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*AP*GP*AP*GP*AP*GP*AP*TP*GP*GP*GP*TP*GP*CP*GP*TP*T)-3'); COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS DNA, QUADRUPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.H.LIU,J.H.GAN REVDAT 2 27-MAR-24 6A85 1 LINK REVDAT 1 06-MAR-19 6A85 0 JRNL AUTH H.H.LIU,R.WANG,X.YU,F.S.SHEN,W.X.LAN,P.HARUEHANROENGRA, JRNL AUTH 2 Q.Q.YAO,J.ZHANG,Y.Q.CHEN,S.H.LI,B.X.WU,L.N.ZHENG,J.B.MA, JRNL AUTH 3 J.Z.LIN,C.Y.CAO,J.X.LI,J.SHENG,J.H.GAN JRNL TITL HIGH-RESOLUTION DNA QUADRUPLEX STRUCTURE CONTAINING ALL THE JRNL TITL 2 A-, G-, C-, T-TETRADS. JRNL REF NUCLEIC ACIDS RES. V. 46 11627 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 30285239 JRNL DOI 10.1093/NAR/GKY902 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 15970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.4998 - 2.6348 0.92 2562 143 0.1384 0.1773 REMARK 3 2 2.6348 - 2.0916 0.99 2616 143 0.1446 0.1562 REMARK 3 3 2.0916 - 1.8273 0.99 2572 138 0.1345 0.1691 REMARK 3 4 1.8273 - 1.6603 0.98 2561 121 0.1235 0.1524 REMARK 3 5 1.6603 - 1.5413 0.97 2552 110 0.1243 0.1741 REMARK 3 6 1.5413 - 1.4504 0.90 2322 130 0.1406 0.1853 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 802 REMARK 3 ANGLE : 1.169 1240 REMARK 3 CHIRALITY : 0.053 134 REMARK 3 PLANARITY : 0.015 34 REMARK 3 DIHEDRAL : 31.769 332 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 1:17) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2508 0.2827 -16.5036 REMARK 3 T TENSOR REMARK 3 T11: 0.0941 T22: 0.0964 REMARK 3 T33: 0.1128 T12: 0.0376 REMARK 3 T13: 0.0025 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.5639 L22: 0.7383 REMARK 3 L33: 3.0666 L12: 0.2134 REMARK 3 L13: 0.1943 L23: -0.1027 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: -0.0843 S13: -0.0208 REMARK 3 S21: 0.0946 S22: 0.0637 S23: 0.0197 REMARK 3 S31: -0.0712 S32: -0.1678 S33: -0.0516 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 1:17) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9526 2.1170 -15.6118 REMARK 3 T TENSOR REMARK 3 T11: 0.1070 T22: 0.0792 REMARK 3 T33: 0.1126 T12: 0.0101 REMARK 3 T13: -0.0059 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.5134 L22: 0.3463 REMARK 3 L33: 2.1012 L12: -0.0544 REMARK 3 L13: -0.6945 L23: -0.1987 REMARK 3 S TENSOR REMARK 3 S11: -0.0325 S12: -0.0652 S13: 0.0380 REMARK 3 S21: 0.0930 S22: 0.0723 S23: 0.0051 REMARK 3 S31: -0.1269 S32: 0.1472 S33: -0.0420 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6A85 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1300008318. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16016 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 64.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.3 REMARK 200 DATA REDUNDANCY IN SHELL : 11.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26200 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL2MAP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM CAPS-NAOH PH 10.5, 200MM LI2SO4, REMARK 280 2.0M (NH4)2SO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 18.91100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.32550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.91100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.32550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -301.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 37.82200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 LI LI A 101 LIES ON A SPECIAL POSITION. REMARK 375 LI LI A 102 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 103 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 104 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 105 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 106 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 107 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 108 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 109 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 110 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 111 LIES ON A SPECIAL POSITION. REMARK 375 PB PB A 112 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 113 LIES ON A SPECIAL POSITION. REMARK 375 NA NA B 101 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 B 102 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA A 3 O3' DA A 3 C3' -0.036 REMARK 500 DT A 12 O3' DT A 12 C3' -0.038 REMARK 500 DC B 14 O3' DC B 14 C3' -0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 5 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG A 6 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA B 5 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG B 6 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 286 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B 287 DISTANCE = 6.67 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 103 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 2 O6 REMARK 620 2 DG A 2 O6 0.0 REMARK 620 3 HOH A 210 O 101.6 101.6 REMARK 620 4 HOH A 210 O 120.7 120.7 89.8 REMARK 620 5 DG B 2 O6 70.3 70.3 166.0 85.0 REMARK 620 6 DG B 2 O6 70.3 70.3 166.0 85.0 0.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 104 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 4 O6 REMARK 620 2 DG A 4 O6 0.0 REMARK 620 3 DG B 4 O6 64.4 64.4 REMARK 620 4 DG B 4 O6 64.4 64.4 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 113 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 4 O6 REMARK 620 2 DG A 4 O6 0.0 REMARK 620 3 DG B 4 O6 67.8 67.8 REMARK 620 4 DG B 4 O6 67.8 67.8 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 105 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 6 O6 REMARK 620 2 DG A 6 O6 0.0 REMARK 620 3 DG B 6 O6 65.7 65.7 REMARK 620 4 DG B 6 O6 65.7 65.7 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 106 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 6 O6 REMARK 620 2 DG A 6 O6 0.0 REMARK 620 3 DT A 8 O4 87.1 87.1 REMARK 620 4 DT A 8 O4 87.1 87.1 0.0 REMARK 620 5 DG B 6 O6 66.4 66.4 83.7 83.7 REMARK 620 6 DG B 6 O6 66.4 66.4 83.7 83.7 0.0 REMARK 620 7 DT B 8 O4 146.2 146.2 67.9 67.9 87.8 87.8 REMARK 620 8 DT B 8 O4 146.2 146.2 67.9 67.9 87.8 87.8 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 107 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 8 O4 REMARK 620 2 DT A 8 O4 0.0 REMARK 620 3 DG A 9 O6 78.5 78.5 REMARK 620 4 DG A 9 O6 78.5 78.5 0.0 REMARK 620 5 DT B 8 O4 72.5 72.5 80.1 80.1 REMARK 620 6 DT B 8 O4 72.5 72.5 80.1 80.1 0.0 REMARK 620 7 DG B 9 O6 140.6 140.6 70.1 70.1 79.2 79.2 REMARK 620 8 DG B 9 O6 140.6 140.6 70.1 70.1 79.2 79.2 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 108 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 9 O6 REMARK 620 2 DG A 9 O6 0.0 REMARK 620 3 DG A 10 O6 75.8 75.8 REMARK 620 4 DG A 10 O6 75.8 75.8 0.0 REMARK 620 5 DG B 9 O6 69.2 69.2 94.8 94.8 REMARK 620 6 DG B 9 O6 69.2 69.2 94.8 94.8 0.0 REMARK 620 7 DG B 10 O6 128.1 128.1 69.0 69.0 76.9 76.9 REMARK 620 8 DG B 10 O6 128.1 128.1 69.0 69.0 76.9 76.9 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 109 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 10 O6 REMARK 620 2 DG A 10 O6 0.0 REMARK 620 3 DG A 11 O6 78.8 78.8 REMARK 620 4 DG A 11 O6 78.8 78.8 0.0 REMARK 620 5 DG B 10 O6 67.3 67.3 91.4 91.4 REMARK 620 6 DG B 10 O6 67.3 67.3 91.4 91.4 0.0 REMARK 620 7 DG B 11 O6 132.9 132.9 70.9 70.9 78.2 78.2 REMARK 620 8 DG B 11 O6 132.9 132.9 70.9 70.9 78.2 78.2 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 110 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 11 O6 REMARK 620 2 DG A 11 O6 0.0 REMARK 620 3 DT A 12 O4 69.7 69.7 REMARK 620 4 DT A 12 O4 69.7 69.7 0.0 REMARK 620 5 DG B 11 O6 63.0 63.0 100.3 100.3 REMARK 620 6 DG B 11 O6 63.0 63.0 100.3 100.3 0.0 REMARK 620 7 DT B 12 O4 114.6 114.6 78.6 78.6 68.8 68.8 REMARK 620 8 DT B 12 O4 114.6 114.6 78.6 78.6 68.8 68.8 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PB A 112 PB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 13 O6 REMARK 620 2 DG A 13 O6 0.0 REMARK 620 3 HOH A 263 O 130.2 130.2 REMARK 620 4 HOH A 263 O 95.4 95.4 99.9 REMARK 620 5 DG B 13 O6 71.6 71.6 158.0 77.8 REMARK 620 6 DG B 13 O6 71.6 71.6 158.0 77.8 0.0 REMARK 620 7 HOH B 216 O 159.5 159.5 68.0 69.5 91.1 91.1 REMARK 620 8 HOH B 216 O 73.2 73.2 69.6 68.0 127.4 127.4 111.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 111 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 15 O6 REMARK 620 2 DG A 15 O6 0.0 REMARK 620 3 HOH A 263 O 164.0 164.0 REMARK 620 4 HOH A 263 O 85.4 85.4 79.0 REMARK 620 5 DG B 15 O6 66.4 66.4 123.6 113.9 REMARK 620 6 DG B 15 O6 66.4 66.4 123.6 113.9 0.0 REMARK 620 7 HOH B 216 O 119.3 119.3 53.2 54.4 88.7 88.7 REMARK 620 8 HOH B 216 O 112.6 112.6 54.4 53.2 166.5 166.5 80.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 2 O6 REMARK 620 2 DG B 2 O6 0.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LI A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LI A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PB A 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 B 102 DBREF 6A85 A 1 17 PDB 6A85 6A85 1 17 DBREF 6A85 B 1 17 PDB 6A85 6A85 1 17 SEQRES 1 A 17 DA DG DA DG DA DG DA DT DG DG DG DT DG SEQRES 2 A 17 DC DG DT DT SEQRES 1 B 17 DA DG DA DG DA DG DA DT DG DG DG DT DG SEQRES 2 B 17 DC DG DT DT HET LI A 101 1 HET LI A 102 1 HET NA A 103 1 HET NA A 104 1 HET NA A 105 1 HET NA A 106 1 HET NA A 107 1 HET NA A 108 1 HET NA A 109 1 HET NA A 110 1 HET NA A 111 1 HET PB A 112 1 HET NA A 113 1 HET NA B 101 1 HET NH4 B 102 1 HETNAM LI LITHIUM ION HETNAM NA SODIUM ION HETNAM PB LEAD (II) ION HETNAM NH4 AMMONIUM ION FORMUL 3 LI 2(LI 1+) FORMUL 5 NA 11(NA 1+) FORMUL 14 PB PB 2+ FORMUL 17 NH4 H4 N 1+ FORMUL 18 HOH *151(H2 O) LINK O6 DG A 2 NA NA A 103 1555 1555 2.83 LINK O6 DG A 2 NA NA A 103 1555 2655 2.84 LINK O6 DG A 4 NA NA A 104 1555 1555 3.02 LINK O6 DG A 4 NA NA A 104 1555 2655 3.02 LINK O6 DG A 4 NA NA A 113 1555 1555 2.98 LINK O6 DG A 4 NA NA A 113 1555 2655 2.98 LINK O6 DG A 6 NA NA A 105 1555 1555 3.00 LINK O6 DG A 6 NA NA A 105 1555 2655 3.00 LINK O6 DG A 6 NA NA A 106 1555 1555 2.94 LINK O6 DG A 6 NA NA A 106 1555 2655 2.94 LINK O4 DT A 8 NA NA A 106 1555 1555 3.13 LINK O4 DT A 8 NA NA A 106 1555 2655 3.13 LINK O4 DT A 8 NA NA A 107 1555 1555 2.95 LINK O4 DT A 8 NA NA A 107 1555 2655 2.95 LINK O6 DG A 9 NA NA A 107 1555 1555 2.87 LINK O6 DG A 9 NA NA A 107 1555 2655 2.87 LINK O6 DG A 9 NA NA A 108 1555 1555 2.88 LINK O6 DG A 9 NA NA A 108 1555 2655 2.88 LINK O6 DG A 10 NA NA A 108 1555 1555 2.86 LINK O6 DG A 10 NA NA A 108 1555 2655 2.86 LINK O6 DG A 10 NA NA A 109 1555 1555 2.93 LINK O6 DG A 10 NA NA A 109 1555 2655 2.93 LINK O6 DG A 11 NA NA A 109 1555 1555 2.85 LINK O6 DG A 11 NA NA A 109 1555 2655 2.85 LINK O6 DG A 11 NA NA A 110 1555 1555 3.15 LINK O6 DG A 11 NA NA A 110 1555 2655 3.15 LINK O4 DT A 12 NA NA A 110 1555 1555 3.07 LINK O4 DT A 12 NA NA A 110 1555 2655 3.07 LINK O6 DG A 13 PB PB A 112 1555 1555 2.77 LINK O6 DG A 13 PB PB A 112 1555 2655 2.77 LINK O6 DG A 15 NA NA A 111 1555 1555 2.95 LINK O6 DG A 15 NA NA A 111 1555 2655 2.95 LINK LI LI A 102 O HOH B 219 1555 2654 2.27 LINK NA NA A 103 O HOH A 210 1555 1555 2.91 LINK NA NA A 103 O HOH A 210 1555 2655 2.91 LINK NA NA A 103 O6 DG B 2 1555 1555 2.86 LINK NA NA A 103 O6 DG B 2 2655 1555 2.86 LINK NA NA A 104 O6 DG B 4 1555 1555 3.12 LINK NA NA A 104 O6 DG B 4 2655 1555 3.12 LINK NA NA A 105 O6 DG B 6 1555 1555 2.98 LINK NA NA A 105 O6 DG B 6 2655 1555 2.98 LINK NA NA A 106 O6 DG B 6 1555 1555 2.98 LINK NA NA A 106 O6 DG B 6 2655 1555 2.98 LINK NA NA A 106 O4 DT B 8 1555 1555 3.10 LINK NA NA A 106 O4 DT B 8 2655 1555 3.10 LINK NA NA A 107 O4 DT B 8 1555 1555 2.93 LINK NA NA A 107 O4 DT B 8 2655 1555 2.93 LINK NA NA A 107 O6 DG B 9 1555 1555 2.82 LINK NA NA A 107 O6 DG B 9 2655 1555 2.82 LINK NA NA A 108 O6 DG B 9 1555 1555 2.88 LINK NA NA A 108 O6 DG B 9 2655 1555 2.89 LINK NA NA A 108 O6 DG B 10 1555 1555 2.87 LINK NA NA A 108 O6 DG B 10 2655 1555 2.88 LINK NA NA A 109 O6 DG B 10 1555 1555 2.92 LINK NA NA A 109 O6 DG B 10 2655 1555 2.92 LINK NA NA A 109 O6 DG B 11 1555 1555 2.85 LINK NA NA A 109 O6 DG B 11 2655 1555 2.85 LINK NA NA A 110 O6 DG B 11 1555 1555 3.19 LINK NA NA A 110 O6 DG B 11 2655 1555 3.19 LINK NA NA A 110 O4 DT B 12 1555 1555 3.06 LINK NA NA A 110 O4 DT B 12 2655 1555 3.06 LINK NA NA A 111 O HOH A 263 1555 1555 2.94 LINK NA NA A 111 O HOH A 263 1555 2655 2.94 LINK NA NA A 111 O6 DG B 15 1555 1555 2.88 LINK NA NA A 111 O6 DG B 15 2655 1555 2.88 LINK NA NA A 111 O HOH B 216 1555 1555 3.18 LINK NA NA A 111 O HOH B 216 1555 2655 3.18 LINK PB PB A 112 O HOH A 263 1555 1555 2.44 LINK PB PB A 112 O HOH A 263 1555 2655 2.44 LINK PB PB A 112 O6 DG B 13 1555 1555 2.75 LINK PB PB A 112 O6 DG B 13 2655 1555 2.75 LINK PB PB A 112 O HOH B 216 1555 1555 2.48 LINK PB PB A 112 O HOH B 216 1555 2655 2.48 LINK NA NA A 113 O6 DG B 4 1555 1555 2.89 LINK NA NA A 113 O6 DG B 4 2655 1555 2.89 LINK O6 DG B 2 NA NA B 101 1555 1555 2.90 LINK O6 DG B 2 NA NA B 101 1555 2655 2.90 SITE 1 AC1 6 DT A 12 DG A 13 NA A 110 PB A 112 SITE 2 AC1 6 DT B 12 DG B 13 SITE 1 AC2 6 DG A 15 NA A 111 DA B 1 DG B 15 SITE 2 AC2 6 NH4 B 102 HOH B 219 SITE 1 AC3 4 DG A 2 HOH A 210 DG B 2 NA B 101 SITE 1 AC4 5 DG A 4 DA A 5 NA A 105 DG B 4 SITE 2 AC4 5 DA B 5 SITE 1 AC5 6 DA A 5 DG A 6 NA A 104 NA A 106 SITE 2 AC5 6 DA B 5 DG B 6 SITE 1 AC6 6 DG A 6 DT A 8 NA A 105 NA A 107 SITE 2 AC6 6 DG B 6 DT B 8 SITE 1 AC7 6 DT A 8 DG A 9 NA A 106 NA A 108 SITE 2 AC7 6 DT B 8 DG B 9 SITE 1 AC8 6 DG A 9 DG A 10 NA A 107 NA A 109 SITE 2 AC8 6 DG B 9 DG B 10 SITE 1 AC9 5 DG A 10 DG A 11 NA A 108 DG B 10 SITE 2 AC9 5 DG B 11 SITE 1 AD1 5 DG A 11 DT A 12 LI A 101 DG B 11 SITE 2 AD1 5 DT B 12 SITE 1 AD2 4 DG A 15 LI A 102 HOH A 263 DG B 15 SITE 1 AD3 5 DG A 13 LI A 101 HOH A 263 DG B 13 SITE 2 AD3 5 HOH B 216 SITE 1 AD4 5 DA A 3 DG A 4 DA B 3 DG B 4 SITE 2 AD4 5 NA B 101 SITE 1 AD5 6 DG A 2 DA A 3 NA A 103 NA A 113 SITE 2 AD5 6 DG B 2 DA B 3 SITE 1 AD6 4 LI A 102 HOH A 210 DA B 1 HOH B 219 CRYST1 37.822 46.651 51.311 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026440 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021436 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019489 0.00000