HEADER SUGAR BINDING PROTEIN 06-JUL-18 6A86 TITLE PHOLIOTA SQUARROSA LECTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: PHOSL; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: PHOLIOTA SQUARROSA; SOURCE 4 ORGANISM_TAXID: 75321 KEYWDS LECTIN, TRIMER, FUCOSE, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.YAMASAKI,T.YAMASAKI,T.KUBOTA REVDAT 4 13-NOV-24 6A86 1 REMARK REVDAT 3 22-NOV-23 6A86 1 REMARK REVDAT 2 03-JUL-19 6A86 1 JRNL REVDAT 1 10-APR-19 6A86 0 JRNL AUTH K.YAMASAKI,T.KUBOTA,T.YAMASAKI,I.NAGASHIMA,H.SHIMIZU, JRNL AUTH 2 R.I.TERADA,H.NISHIGAMI,J.KANG,M.TATENO,H.TATENO JRNL TITL STRUCTURAL BASIS FOR SPECIFIC RECOGNITION OF CORE JRNL TITL 2 FUCOSYLATION IN N-GLYCANS BY PHOLIOTA SQUARROSA LECTIN JRNL TITL 3 (PHOSL). JRNL REF GLYCOBIOLOGY V. 29 576 2019 JRNL REFN ESSN 1460-2423 JRNL PMID 30913288 JRNL DOI 10.1093/GLYCOB/CWZ025 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 26967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1356 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1983 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1855 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.012 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1956 ; 0.031 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1712 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2694 ; 2.255 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3970 ; 1.099 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 6.361 ; 5.042 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;30.597 ;24.615 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 258 ;15.610 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 302 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2159 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 409 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 950 ; 3.390 ; 3.153 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 949 ; 3.372 ; 3.149 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1179 ; 4.785 ; 4.682 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1180 ; 4.786 ; 4.689 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1006 ; 4.050 ; 3.526 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1006 ; 3.987 ; 3.526 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1512 ; 5.509 ; 5.142 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2258 ; 7.823 ;37.908 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2225 ; 7.806 ;37.697 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6A86 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1300008320. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28520 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 42.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5XZK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M POTASSIUM-SODIUM PHOSPHATE (PH REMARK 280 7.0), 5% 1,3-BUTANEDIOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 72.64000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.93872 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 13.20833 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 72.64000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 41.93872 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.20833 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 72.64000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 41.93872 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.20833 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 83.87745 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 26.41667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 83.87745 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 26.41667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 83.87745 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 26.41667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR D 40 REMARK 465 THR F 39 REMARK 465 THR F 40 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS D 10 SG CYS D 17 1.54 REMARK 500 OD2 ASP E 25 NE2 HIS F 38 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 237 O HOH F 217 6454 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS D 17 CB - CA - C ANGL. DEV. = 10.2 DEGREES REMARK 500 CYS D 17 CA - CB - SG ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR F 23 139.34 -174.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU4 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU4 A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU4 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU4 F 101 DBREF 6A86 A 1 40 PDB 6A86 6A86 1 40 DBREF 6A86 B 1 40 PDB 6A86 6A86 1 40 DBREF 6A86 C 1 40 PDB 6A86 6A86 1 40 DBREF 6A86 D 1 40 PDB 6A86 6A86 1 40 DBREF 6A86 E 1 40 PDB 6A86 6A86 1 40 DBREF 6A86 F 1 40 PDB 6A86 6A86 1 40 SEQRES 1 A 40 ALA PRO VAL PRO VAL THR LYS LEU VAL CYS ASP GLY ASP SEQRES 2 A 40 THR TYR LYS CYS THR ALA TYR LEU ASP TYR GLY ASP GLY SEQRES 3 A 40 LYS TRP VAL ALA GLN TRP ASP THR ALA VAL PHE HIS THR SEQRES 4 A 40 THR SEQRES 1 B 40 ALA PRO VAL PRO VAL THR LYS LEU VAL CYS ASP GLY ASP SEQRES 2 B 40 THR TYR LYS CYS THR ALA TYR LEU ASP TYR GLY ASP GLY SEQRES 3 B 40 LYS TRP VAL ALA GLN TRP ASP THR ALA VAL PHE HIS THR SEQRES 4 B 40 THR SEQRES 1 C 40 ALA PRO VAL PRO VAL THR LYS LEU VAL CYS ASP GLY ASP SEQRES 2 C 40 THR TYR LYS CYS THR ALA TYR LEU ASP TYR GLY ASP GLY SEQRES 3 C 40 LYS TRP VAL ALA GLN TRP ASP THR ALA VAL PHE HIS THR SEQRES 4 C 40 THR SEQRES 1 D 40 ALA PRO VAL PRO VAL THR LYS LEU VAL CYS ASP GLY ASP SEQRES 2 D 40 THR TYR LYS CYS THR ALA TYR LEU ASP TYR GLY ASP GLY SEQRES 3 D 40 LYS TRP VAL ALA GLN TRP ASP THR ALA VAL PHE HIS THR SEQRES 4 D 40 THR SEQRES 1 E 40 ALA PRO VAL PRO VAL THR LYS LEU VAL CYS ASP GLY ASP SEQRES 2 E 40 THR TYR LYS CYS THR ALA TYR LEU ASP TYR GLY ASP GLY SEQRES 3 E 40 LYS TRP VAL ALA GLN TRP ASP THR ALA VAL PHE HIS THR SEQRES 4 E 40 THR SEQRES 1 F 40 ALA PRO VAL PRO VAL THR LYS LEU VAL CYS ASP GLY ASP SEQRES 2 F 40 THR TYR LYS CYS THR ALA TYR LEU ASP TYR GLY ASP GLY SEQRES 3 F 40 LYS TRP VAL ALA GLN TRP ASP THR ALA VAL PHE HIS THR SEQRES 4 F 40 THR HET BU4 A 101 6 HET BU4 A 102 6 HET BU4 B 101 6 HET BU4 F 101 6 HETNAM BU4 (3R)-BUTANE-1,3-DIOL FORMUL 7 BU4 4(C4 H10 O2) FORMUL 11 HOH *185(H2 O) SHEET 1 AA1 8 ALA A 35 HIS A 38 0 SHEET 2 AA1 8 TRP C 28 ASP C 33 -1 O GLN C 31 N ALA A 35 SHEET 3 AA1 8 LYS C 16 LEU C 21 -1 N ALA C 19 O ALA C 30 SHEET 4 AA1 8 PRO C 2 ASP C 11 -1 N VAL C 9 O THR C 18 SHEET 5 AA1 8 PRO A 2 ASP A 11 -1 N CYS A 10 O VAL C 3 SHEET 6 AA1 8 LYS A 16 LEU A 21 -1 O THR A 18 N VAL A 9 SHEET 7 AA1 8 TRP A 28 ASP A 33 -1 O TRP A 32 N CYS A 17 SHEET 8 AA1 8 ALA B 35 HIS B 38 -1 O ALA B 35 N GLN A 31 SHEET 1 AA2 8 ALA A 35 HIS A 38 0 SHEET 2 AA2 8 TRP C 28 ASP C 33 -1 O GLN C 31 N ALA A 35 SHEET 3 AA2 8 LYS C 16 LEU C 21 -1 N ALA C 19 O ALA C 30 SHEET 4 AA2 8 PRO C 2 ASP C 11 -1 N VAL C 9 O THR C 18 SHEET 5 AA2 8 PRO B 2 ASP B 11 -1 N VAL B 3 O CYS C 10 SHEET 6 AA2 8 LYS B 16 LEU B 21 -1 O LYS B 16 N ASP B 11 SHEET 7 AA2 8 TRP B 28 ASP B 33 -1 O ALA B 30 N ALA B 19 SHEET 8 AA2 8 ALA C 35 HIS C 38 -1 O PHE C 37 N VAL B 29 SHEET 1 AA3 8 ALA C 35 HIS C 38 0 SHEET 2 AA3 8 TRP B 28 ASP B 33 -1 N VAL B 29 O PHE C 37 SHEET 3 AA3 8 LYS B 16 LEU B 21 -1 N ALA B 19 O ALA B 30 SHEET 4 AA3 8 PRO B 2 ASP B 11 -1 N ASP B 11 O LYS B 16 SHEET 5 AA3 8 PRO A 2 ASP A 11 -1 N VAL A 3 O CYS B 10 SHEET 6 AA3 8 LYS A 16 LEU A 21 -1 O THR A 18 N VAL A 9 SHEET 7 AA3 8 TRP A 28 ASP A 33 -1 O TRP A 32 N CYS A 17 SHEET 8 AA3 8 ALA B 35 HIS B 38 -1 O ALA B 35 N GLN A 31 SHEET 1 AA4 4 ALA B 35 HIS B 38 0 SHEET 2 AA4 4 TRP A 28 ASP A 33 -1 N GLN A 31 O ALA B 35 SHEET 3 AA4 4 TRP B 28 ASP B 33 0 SHEET 4 AA4 4 ALA C 35 HIS C 38 -1 O PHE C 37 N VAL B 29 SHEET 1 AA5 8 ALA D 35 HIS D 38 0 SHEET 2 AA5 8 TRP F 28 ASP F 33 -1 O GLN F 31 N ALA D 35 SHEET 3 AA5 8 LYS F 16 LEU F 21 -1 N ALA F 19 O ALA F 30 SHEET 4 AA5 8 PRO F 2 ASP F 11 -1 N VAL F 9 O THR F 18 SHEET 5 AA5 8 PRO D 2 ASP D 11 -1 N CYS D 10 O VAL F 3 SHEET 6 AA5 8 LYS D 16 LEU D 21 -1 O THR D 18 N VAL D 9 SHEET 7 AA5 8 TRP D 28 ASP D 33 -1 O ALA D 30 N ALA D 19 SHEET 8 AA5 8 ALA E 35 HIS E 38 -1 O PHE E 37 N VAL D 29 SHEET 1 AA6 8 ALA D 35 HIS D 38 0 SHEET 2 AA6 8 TRP F 28 ASP F 33 -1 O GLN F 31 N ALA D 35 SHEET 3 AA6 8 LYS F 16 LEU F 21 -1 N ALA F 19 O ALA F 30 SHEET 4 AA6 8 PRO F 2 ASP F 11 -1 N VAL F 9 O THR F 18 SHEET 5 AA6 8 PRO E 2 ASP E 11 -1 N VAL E 3 O CYS F 10 SHEET 6 AA6 8 LYS E 16 LEU E 21 -1 O THR E 18 N VAL E 9 SHEET 7 AA6 8 VAL E 29 ASP E 33 -1 O ALA E 30 N ALA E 19 SHEET 8 AA6 8 ALA F 35 PHE F 37 -1 O ALA F 35 N GLN E 31 SHEET 1 AA7 8 ALA F 35 PHE F 37 0 SHEET 2 AA7 8 VAL E 29 ASP E 33 -1 N GLN E 31 O ALA F 35 SHEET 3 AA7 8 LYS E 16 LEU E 21 -1 N ALA E 19 O ALA E 30 SHEET 4 AA7 8 PRO E 2 ASP E 11 -1 N VAL E 9 O THR E 18 SHEET 5 AA7 8 PRO D 2 ASP D 11 -1 N VAL D 3 O CYS E 10 SHEET 6 AA7 8 LYS D 16 LEU D 21 -1 O THR D 18 N VAL D 9 SHEET 7 AA7 8 TRP D 28 ASP D 33 -1 O ALA D 30 N ALA D 19 SHEET 8 AA7 8 ALA E 35 HIS E 38 -1 O PHE E 37 N VAL D 29 SHEET 1 AA8 4 ALA E 35 HIS E 38 0 SHEET 2 AA8 4 TRP D 28 ASP D 33 -1 N VAL D 29 O PHE E 37 SHEET 3 AA8 4 VAL E 29 ASP E 33 0 SHEET 4 AA8 4 ALA F 35 PHE F 37 -1 O ALA F 35 N GLN E 31 SSBOND 1 CYS A 10 CYS A 17 1555 1555 2.06 SSBOND 2 CYS D 10 CYS D 17 1555 1555 2.85 SSBOND 3 CYS E 10 CYS E 17 1555 1555 2.13 SSBOND 4 CYS F 10 CYS F 17 1555 1555 2.07 SITE 1 AC1 5 TYR A 23 TRP A 28 HOH A 227 GLY B 12 SITE 2 AC1 5 TYR B 15 SITE 1 AC2 4 GLY A 12 HOH A 212 ALA C 1 TYR C 23 SITE 1 AC3 2 TRP B 28 THR D 6 SITE 1 AC4 6 ASP D 11 GLY D 12 ASP D 13 ALA F 1 SITE 2 AC4 6 TYR F 23 TRP F 28 CRYST1 145.280 145.280 39.625 90.00 90.00 120.00 H 3 54 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006883 0.003974 0.000000 0.00000 SCALE2 0.000000 0.007948 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025237 0.00000