HEADER TRANSPORT PROTEIN 10-JUL-18 6A8S TITLE CRYSTAL STRUCTURE OF THE PUTATIVE AMINO ACID-BINDING PERIPLASMIC ABC TITLE 2 TRANSPORTER PROTEIN FROM CANDIDATUS LIBERIBACTER ASIATICUS IN COMPLEX TITLE 3 WITH CYSTEINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE AMINO ACID-BINDING PERIPLASMIC ABC TRANSPORTER COMPND 3 PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LIBERIBACTER ASIATICUS (STRAIN PSY62); SOURCE 3 ORGANISM_TAXID: 537021; SOURCE 4 STRAIN: PSY62; SOURCE 5 GENE: CLIBASIA_05070; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28C KEYWDS CANDIDATUS LIBERIBACTER ASIATICUS, PERIPLASMIC, SOLUTE BINDING, KEYWDS 2 CYSTEINE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.KUMAR,P.KESARI,D.K.GHOSH,P.KUMAR,A.K.SHARMA REVDAT 3 22-NOV-23 6A8S 1 REMARK REVDAT 2 18-SEP-19 6A8S 1 JRNL REVDAT 1 12-JUN-19 6A8S 0 JRNL AUTH P.KUMAR,P.KESARI,S.KOKANE,D.K.GHOSH,P.KUMAR,A.K.SHARMA JRNL TITL CRYSTAL STRUCTURES OF A PUTATIVE PERIPLASMIC CYSTINE-BINDING JRNL TITL 2 PROTEIN FROM CANDIDATUS LIBERIBACTER ASIATICUS: INSIGHTS JRNL TITL 3 INTO AN ADAPTED MECHANISM OF LIGAND BINDING. JRNL REF FEBS J. V. 286 3450 2019 JRNL REFN ISSN 1742-464X JRNL PMID 31063259 JRNL DOI 10.1111/FEBS.14921 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 31364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 1503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.8909 - 4.5566 1.00 2896 142 0.1869 0.2261 REMARK 3 2 4.5566 - 3.6177 1.00 2755 149 0.1509 0.2291 REMARK 3 3 3.6177 - 3.1607 1.00 2745 136 0.1766 0.1942 REMARK 3 4 3.1607 - 2.8718 1.00 2722 122 0.2003 0.3137 REMARK 3 5 2.8718 - 2.6660 1.00 2705 125 0.2233 0.3022 REMARK 3 6 2.6660 - 2.5089 1.00 2690 137 0.2222 0.2768 REMARK 3 7 2.5089 - 2.3833 1.00 2698 130 0.2335 0.3315 REMARK 3 8 2.3833 - 2.2795 1.00 2652 140 0.2308 0.2791 REMARK 3 9 2.2795 - 2.1918 1.00 2690 128 0.2401 0.2903 REMARK 3 10 2.1918 - 2.1162 1.00 2646 145 0.2501 0.3601 REMARK 3 11 2.1162 - 2.0500 1.00 2662 149 0.2882 0.3656 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4093 REMARK 3 ANGLE : 0.886 5489 REMARK 3 CHIRALITY : 0.054 602 REMARK 3 PLANARITY : 0.005 711 REMARK 3 DIHEDRAL : 5.772 3354 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6A8S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1300008303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976251 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JUNE1, 2017 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31433 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 70.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA 22(2018-05-05) REMARK 200 STARTING MODEL: 2YLN REMARK 200 REMARK 200 REMARK: CUBIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULPHATE, 0.1M SODIUM REMARK 280 ACETATE TRIHYDRATE, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.89550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.08200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.52450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.08200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.89550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.52450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 ARG A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 465 ASP A 6 REMARK 465 GLN A 7 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 ARG B 3 REMARK 465 THR B 4 REMARK 465 GLU B 5 REMARK 465 ASP B 6 REMARK 465 GLN B 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 230 O HOH B 401 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 178 -22.66 66.09 REMARK 500 CYS B 239 -168.41 -105.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 484 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 485 DISTANCE = 9.62 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYS A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYS B 316 DBREF 6A8S A 2 241 UNP C6XGT2 C6XGT2_LIBAP 35 274 DBREF 6A8S B 2 241 UNP C6XGT2 C6XGT2_LIBAP 35 274 SEQADV 6A8S MET A 1 UNP C6XGT2 INITIATING METHIONINE SEQADV 6A8S MET B 1 UNP C6XGT2 INITIATING METHIONINE SEQRES 1 A 241 MET PHE ARG THR GLU ASP GLN SER ALA LEU ARG VAL GLY SEQRES 2 A 241 THR ASP GLY ILE TYR PRO PRO HIS SER PHE HIS ALA GLN SEQRES 3 A 241 ASP GLY ARG GLY GLU LEU THR GLY PHE ASP ILE ASP LEU SEQRES 4 A 241 ILE LYS GLU VAL ALA HIS ARG LEU ASN LEU LYS VAL GLU SEQRES 5 A 241 PHE PHE GLU THR ALA VAL SER GLY LEU ILE THR GLY LEU SEQRES 6 A 241 ASP THR ASN ARG TYR ASP VAL LEU VAL ASN VAL ALA ILE SEQRES 7 A 241 THR PRO GLU ARG GLN LYS LYS TYR ASP PHE SER ILE PRO SEQRES 8 A 241 TYR ILE ALA HIS ARG VAL LEU LEU VAL VAL ARG SER ASP SEQRES 9 A 241 GLN GLN ASP ILE ARG SER PHE LYS ASP LEU THR ASP LYS SEQRES 10 A 241 THR VAL ALA GLN ILE LEU GLY THR ASP LEU SER ARG PHE SEQRES 11 A 241 ALA LYS GLU LEU LYS SER HIS LEU VAL PHE SER HIS ASN SEQRES 12 A 241 PHE GLU GLN SER LEU GLN LEU LEU LEU SER LYS ARG THR SEQRES 13 A 241 ASP ALA THR MET ILE PRO ASP ILE PRO PHE PHE ASN PHE SEQRES 14 A 241 LEU GLU ARG ARG PRO HIS ASP GLY ASN LEU PHE LYS ILE SEQRES 15 A 241 ALA ASP ARG MET LYS ASP ASN SER ALA VAL ALA PHE MET SEQRES 16 A 241 MET ARG LYS GLY ASN ASN LYS LEU THR ARG SER ILE ASN SEQRES 17 A 241 GLU ILE LEU CYS ALA ILE HIS LEU ASP GLY THR TYR LYS SEQRES 18 A 241 LYS ILE PHE ASP ARG TYR PHE ASP LYS ASN ILE ILE SER SEQRES 19 A 241 SER VAL PRO GLY CYS SER SER SEQRES 1 B 241 MET PHE ARG THR GLU ASP GLN SER ALA LEU ARG VAL GLY SEQRES 2 B 241 THR ASP GLY ILE TYR PRO PRO HIS SER PHE HIS ALA GLN SEQRES 3 B 241 ASP GLY ARG GLY GLU LEU THR GLY PHE ASP ILE ASP LEU SEQRES 4 B 241 ILE LYS GLU VAL ALA HIS ARG LEU ASN LEU LYS VAL GLU SEQRES 5 B 241 PHE PHE GLU THR ALA VAL SER GLY LEU ILE THR GLY LEU SEQRES 6 B 241 ASP THR ASN ARG TYR ASP VAL LEU VAL ASN VAL ALA ILE SEQRES 7 B 241 THR PRO GLU ARG GLN LYS LYS TYR ASP PHE SER ILE PRO SEQRES 8 B 241 TYR ILE ALA HIS ARG VAL LEU LEU VAL VAL ARG SER ASP SEQRES 9 B 241 GLN GLN ASP ILE ARG SER PHE LYS ASP LEU THR ASP LYS SEQRES 10 B 241 THR VAL ALA GLN ILE LEU GLY THR ASP LEU SER ARG PHE SEQRES 11 B 241 ALA LYS GLU LEU LYS SER HIS LEU VAL PHE SER HIS ASN SEQRES 12 B 241 PHE GLU GLN SER LEU GLN LEU LEU LEU SER LYS ARG THR SEQRES 13 B 241 ASP ALA THR MET ILE PRO ASP ILE PRO PHE PHE ASN PHE SEQRES 14 B 241 LEU GLU ARG ARG PRO HIS ASP GLY ASN LEU PHE LYS ILE SEQRES 15 B 241 ALA ASP ARG MET LYS ASP ASN SER ALA VAL ALA PHE MET SEQRES 16 B 241 MET ARG LYS GLY ASN ASN LYS LEU THR ARG SER ILE ASN SEQRES 17 B 241 GLU ILE LEU CYS ALA ILE HIS LEU ASP GLY THR TYR LYS SEQRES 18 B 241 LYS ILE PHE ASP ARG TYR PHE ASP LYS ASN ILE ILE SER SEQRES 19 B 241 SER VAL PRO GLY CYS SER SER HET SO4 A 301 5 HET EDO A 302 4 HET TRS A 303 8 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET EDO A 310 4 HET EDO A 311 4 HET EDO A 312 4 HET ACT A 313 4 HET GOL A 314 6 HET CYS A 315 7 HET EDO A 316 4 HET EDO A 317 4 HET EDO B 301 4 HET SO4 B 302 5 HET SO4 B 303 5 HET EDO B 304 4 HET ACT B 305 4 HET EDO B 306 4 HET EDO B 307 4 HET EDO B 308 4 HET EDO B 309 4 HET EDO B 310 4 HET EDO B 311 4 HET EDO B 312 4 HET EDO B 313 4 HET ACT B 314 4 HET GOL B 315 6 HET CYS B 316 7 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM CYS CYSTEINE HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 3(O4 S 2-) FORMUL 4 EDO 22(C2 H6 O2) FORMUL 5 TRS C4 H12 N O3 1+ FORMUL 15 ACT 3(C2 H3 O2 1-) FORMUL 16 GOL 2(C3 H8 O3) FORMUL 17 CYS 2(C3 H7 N O2 S) FORMUL 36 HOH *175(H2 O) HELIX 1 AA1 ALA A 25 ARG A 29 1 5 HELIX 2 AA2 GLY A 34 LEU A 47 1 14 HELIX 3 AA3 ALA A 57 SER A 59 5 3 HELIX 4 AA4 GLY A 60 THR A 67 1 8 HELIX 5 AA5 THR A 79 LYS A 85 1 7 HELIX 6 AA6 SER A 110 THR A 115 5 6 HELIX 7 AA7 THR A 125 LEU A 134 1 10 HELIX 8 AA8 ASN A 143 SER A 153 1 11 HELIX 9 AA9 ASP A 163 ARG A 173 1 11 HELIX 10 AB1 PRO A 174 ASN A 178 5 5 HELIX 11 AB2 ASN A 200 ASP A 217 1 18 HELIX 12 AB3 GLY A 218 PHE A 228 1 11 HELIX 13 AB4 ALA B 25 ARG B 29 1 5 HELIX 14 AB5 GLY B 34 LEU B 47 1 14 HELIX 15 AB6 ALA B 57 THR B 67 1 11 HELIX 16 AB7 THR B 79 LYS B 85 1 7 HELIX 17 AB8 PHE B 111 THR B 115 5 5 HELIX 18 AB9 THR B 125 LEU B 134 1 10 HELIX 19 AC1 ASN B 143 SER B 153 1 11 HELIX 20 AC2 ASP B 163 ARG B 173 1 11 HELIX 21 AC3 ASN B 200 ASP B 217 1 18 HELIX 22 AC4 GLY B 218 PHE B 228 1 11 SHEET 1 AA1 5 LYS A 50 GLU A 55 0 SHEET 2 AA1 5 ALA A 9 THR A 14 1 N LEU A 10 O LYS A 50 SHEET 3 AA1 5 VAL A 72 ALA A 77 1 O VAL A 72 N GLY A 13 SHEET 4 AA1 5 SER A 190 ARG A 197 -1 O ALA A 193 N VAL A 76 SHEET 5 AA1 5 TYR A 86 PHE A 88 -1 N ASP A 87 O MET A 196 SHEET 1 AA2 5 LYS A 50 GLU A 55 0 SHEET 2 AA2 5 ALA A 9 THR A 14 1 N LEU A 10 O LYS A 50 SHEET 3 AA2 5 VAL A 72 ALA A 77 1 O VAL A 72 N GLY A 13 SHEET 4 AA2 5 SER A 190 ARG A 197 -1 O ALA A 193 N VAL A 76 SHEET 5 AA2 5 ILE A 93 HIS A 95 -1 N HIS A 95 O SER A 190 SHEET 1 AA3 3 ILE A 17 TYR A 18 0 SHEET 2 AA3 3 SER A 22 HIS A 24 -1 O SER A 22 N TYR A 18 SHEET 3 AA3 3 LEU A 32 THR A 33 -1 O THR A 33 N PHE A 23 SHEET 1 AA4 5 HIS A 137 SER A 141 0 SHEET 2 AA4 5 THR A 118 ILE A 122 1 N VAL A 119 O VAL A 139 SHEET 3 AA4 5 ALA A 158 PRO A 162 1 O ALA A 158 N ALA A 120 SHEET 4 AA4 5 VAL A 97 ARG A 102 -1 N LEU A 98 O ILE A 161 SHEET 5 AA4 5 PHE A 180 ARG A 185 -1 O ALA A 183 N LEU A 99 SHEET 1 AA5 5 LYS B 50 GLU B 55 0 SHEET 2 AA5 5 ALA B 9 THR B 14 1 N LEU B 10 O LYS B 50 SHEET 3 AA5 5 VAL B 72 ALA B 77 1 O VAL B 72 N GLY B 13 SHEET 4 AA5 5 SER B 190 ARG B 197 -1 O ALA B 193 N VAL B 76 SHEET 5 AA5 5 TYR B 86 PHE B 88 -1 N ASP B 87 O MET B 196 SHEET 1 AA6 5 LYS B 50 GLU B 55 0 SHEET 2 AA6 5 ALA B 9 THR B 14 1 N LEU B 10 O LYS B 50 SHEET 3 AA6 5 VAL B 72 ALA B 77 1 O VAL B 72 N GLY B 13 SHEET 4 AA6 5 SER B 190 ARG B 197 -1 O ALA B 193 N VAL B 76 SHEET 5 AA6 5 ILE B 93 HIS B 95 -1 N HIS B 95 O SER B 190 SHEET 1 AA7 3 ILE B 17 TYR B 18 0 SHEET 2 AA7 3 SER B 22 HIS B 24 -1 O SER B 22 N TYR B 18 SHEET 3 AA7 3 LEU B 32 THR B 33 -1 O THR B 33 N PHE B 23 SHEET 1 AA8 5 HIS B 137 SER B 141 0 SHEET 2 AA8 5 THR B 118 ILE B 122 1 N VAL B 119 O VAL B 139 SHEET 3 AA8 5 ALA B 158 PRO B 162 1 O ALA B 158 N ALA B 120 SHEET 4 AA8 5 VAL B 97 ARG B 102 -1 N LEU B 98 O ILE B 161 SHEET 5 AA8 5 PHE B 180 ARG B 185 -1 O LYS B 181 N VAL B 101 SSBOND 1 CYS A 212 CYS A 239 1555 1555 2.03 SSBOND 2 CYS B 212 CYS B 239 1555 1555 2.01 CISPEP 1 PRO A 19 PRO A 20 0 1.00 CISPEP 2 PRO B 19 PRO B 20 0 4.07 SITE 1 AC1 2 ARG A 226 HOH A 401 SITE 1 AC2 6 TYR A 18 ASN A 75 PHE A 144 EDO A 305 SITE 2 AC2 6 CYS A 315 HOH A 455 SITE 1 AC3 3 ALA A 25 GLN A 26 ASP A 27 SITE 1 AC4 3 LYS A 222 ARG A 226 HOH A 425 SITE 1 AC5 5 THR A 14 ASP A 15 ASN A 75 EDO A 302 SITE 2 AC5 5 HOH A 402 SITE 1 AC6 5 THR A 67 ARG A 69 HOH A 419 PRO B 174 SITE 2 AC6 5 ASN B 178 SITE 1 AC7 4 LYS A 221 PHE A 224 ASP A 225 LYS A 230 SITE 1 AC8 4 PHE A 53 GLU A 55 VAL A 139 PHE A 140 SITE 1 AC9 2 ARG A 172 ARG A 173 SITE 1 AD1 4 HIS A 24 GLU A 55 LYS A 132 PHE A 140 SITE 1 AD2 3 SER A 234 SER A 235 HOH A 421 SITE 1 AD3 2 ARG A 29 ASP A 116 SITE 1 AD4 6 ARG A 173 PRO A 174 HIS A 175 ASP A 176 SITE 2 AD4 6 HOH A 428 LYS B 154 SITE 1 AD5 5 ASP A 163 ARG A 185 ILE A 232 HOH A 475 SITE 2 AD5 5 ASN B 68 SITE 1 AD6 8 ALA A 77 ARG A 82 THR A 125 ASP A 126 SITE 2 AD6 8 EDO A 302 HOH A 443 HOH A 462 EDO B 301 SITE 1 AD7 2 SER A 241 EDO A 317 SITE 1 AD8 6 SER A 240 EDO A 316 HIS B 95 VAL B 97 SITE 2 AD8 6 SER B 190 CYS B 316 SITE 1 AD9 6 HIS A 95 VAL A 97 SER A 190 CYS A 315 SITE 2 AD9 6 SER B 240 HOH B 445 SITE 1 AE1 3 LYS B 222 ARG B 226 HOH B 410 SITE 1 AE2 6 GLY B 30 GLU B 31 GLU B 133 LYS B 135 SITE 2 AE2 6 ARG B 155 HOH B 417 SITE 1 AE3 8 VAL B 58 ASN B 75 THR B 125 PHE B 144 SITE 2 AE3 8 EDO B 307 EDO B 312 HOH B 403 HOH B 420 SITE 1 AE4 5 LYS B 132 LYS B 135 SER B 136 GLN B 146 SITE 2 AE4 5 GLN B 149 SITE 1 AE5 4 GLU B 42 LYS B 222 ARG B 226 HOH B 422 SITE 1 AE6 7 ASN B 75 VAL B 76 ARG B 82 EDO B 304 SITE 2 AE6 7 EDO B 311 CYS B 316 HOH B 403 SITE 1 AE7 8 GLY A 177 ASN A 178 PHE A 180 THR B 56 SITE 2 AE7 8 GLY B 60 THR B 63 GLY B 64 ARG B 69 SITE 1 AE8 7 HIS A 175 ASP A 176 ASN A 178 LEU A 179 SITE 2 AE8 7 GLN B 105 GLN B 106 ASP B 107 SITE 1 AE9 2 GLN B 26 ASP B 27 SITE 1 AF1 8 VAL B 58 LEU B 61 ILE B 62 ARG B 82 SITE 2 AF1 8 GLY B 124 EDO B 307 CYS B 316 HOH B 407 SITE 1 AF2 6 THR B 14 ASP B 15 ASN B 75 EDO B 304 SITE 2 AF2 6 HOH B 403 HOH B 423 SITE 1 AF3 5 HIS A 175 PHE B 54 GLU B 55 THR B 56 SITE 2 AF3 5 ARG B 69 SITE 1 AF4 3 GLU B 31 LEU B 32 ARG B 155 SITE 1 AF5 6 SER B 136 HIS B 137 LEU B 138 HIS B 142 SITE 2 AF5 6 ASN B 143 GLU B 145 SITE 1 AF6 9 EDO A 317 ALA B 77 ARG B 82 THR B 125 SITE 2 AF6 9 ASP B 126 LEU B 127 EDO B 307 EDO B 311 SITE 3 AF6 9 HOH B 446 CRYST1 45.791 87.049 122.164 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021838 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011488 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008186 0.00000