HEADER IMMUNE SYSTEM 13-JUL-18 6A9K TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF THE HYDROLYTIC ANTIBODY FAB 9C10 TITLE 2 WITH A TRANSITION-STATE ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN 9C10 L CHAIN; COMPND 3 CHAIN: L, A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: IMMUNOGLOBULIN 9C10 H CHAIN; COMPND 6 CHAIN: H, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 6 ORGANISM_TAXID: 10090 KEYWDS CATALYTIC ANTIBODY, HYDROLYTIC ANTIBODY, 9C10, FAB, COMPLEX, KEYWDS 2 TRANSITION-STATE ANALOG, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.TSUCHIYA,I.FUJII,T.TADA,A.YAMAGUCHI,T.TSUMURAYA,A.KUMON REVDAT 3 23-OCT-24 6A9K 1 REMARK REVDAT 2 22-NOV-23 6A9K 1 REMARK REVDAT 1 24-JUL-19 6A9K 0 JRNL AUTH Y.TSUCHIYA,I.FUJII,T.TADA,A.YAMAGUCHI,T.TSUMURAYA,A.KUMON JRNL TITL CRYSTAL STRUCTURE OF THE COMPLEX OF THE HYDROLYTIC ANTIBODY JRNL TITL 2 FAB 9C10 WITH A TRANSITION-STATE ANALOG JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 56045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2993 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4088 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 221 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6754 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.669 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7020 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 6360 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9574 ; 1.818 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14732 ; 0.985 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 874 ; 7.279 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 272 ;35.414 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1108 ;15.902 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;18.019 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1076 ; 0.197 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7888 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1570 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3508 ; 2.937 ; 3.122 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3507 ; 2.933 ; 3.121 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4378 ; 4.311 ; 4.658 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4379 ; 4.310 ; 4.660 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3512 ; 3.347 ; 3.392 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3507 ; 3.348 ; 3.393 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5190 ; 5.008 ; 4.959 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7728 ; 7.058 ;25.494 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7684 ; 7.055 ;25.463 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6A9K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1300008333. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59706 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.15500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.92100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2DTM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS-HCL, 25% PEG 3350, 0.1 MM REMARK 280 EDTA, PH8.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.27650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU H 85 CD GLU H 85 OE2 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 108 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG L 108 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 VAL H 63 CG1 - CB - CG2 ANGL. DEV. = 11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR L 32 69.72 -105.07 REMARK 500 ILE L 51 -52.18 69.49 REMARK 500 TYR H 97 -122.48 56.21 REMARK 500 ALA H 129 -47.55 70.70 REMARK 500 ALA H 130 29.92 -70.97 REMARK 500 GLN H 131 32.80 -78.54 REMARK 500 THR H 132 -93.06 46.89 REMARK 500 ASN H 133 -1.83 131.30 REMARK 500 SER A 28 -5.05 -54.56 REMARK 500 ILE A 51 -48.17 73.44 REMARK 500 SER A 52 -0.26 -140.91 REMARK 500 ALA A 130 112.32 -160.68 REMARK 500 GLU A 213 116.21 -163.38 REMARK 500 VAL B 2 137.05 -38.67 REMARK 500 LYS B 43 8.66 81.46 REMARK 500 SER B 62 10.52 -63.85 REMARK 500 VAL B 63 -22.34 -145.53 REMARK 500 ALA B 88 164.65 174.79 REMARK 500 TYR B 97 -124.82 51.07 REMARK 500 GLN B 131 174.66 67.59 REMARK 500 THR B 132 45.45 39.93 REMARK 500 SER B 134 -23.88 57.07 REMARK 500 SER B 203 51.19 39.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 186 THR B 187 139.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9T0 H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9T0 B 301 DBREF 6A9K L 1 214 PDB 6A9K 6A9K 1 214 DBREF 6A9K H 1 215 PDB 6A9K 6A9K 1 215 DBREF 6A9K A 1 214 PDB 6A9K 6A9K 1 214 DBREF 6A9K B 1 215 PDB 6A9K 6A9K 1 215 SEQRES 1 L 219 ASP LEU LEU MET ALA GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 219 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN SER LEU VAL HIS SER SER GLY ASN THR TYR LEU GLU SEQRES 4 L 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 219 ILE TYR LYS ILE SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 219 TYR CYS PHE GLN THR SER HIS VAL PRO PRO THR PHE GLY SEQRES 9 L 219 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 L 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 H 220 GLU VAL MET LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 220 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLU SEQRES 3 H 220 PHE THR PHE SER THR TYR ILE MET SER TRP VAL ARG GLN SEQRES 4 H 220 THR PRO GLU LYS ARG LEU GLU TRP VAL ALA THR ILE SER SEQRES 5 H 220 SER SER GLY THR TYR THR TYR TYR ARG ASP SER VAL LYS SEQRES 6 H 220 GLY ARG PHE THR VAL SER ARG ASP ASN ALA ASN ASN ILE SEQRES 7 H 220 LEU TYR LEU GLN MET SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 220 ALA LEU TYR TYR CYS ALA ARG ARG ASP TYR TYR ASP GLY SEQRES 9 H 220 PHE THR TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 220 ALA ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA SEQRES 11 H 220 PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR LEU SEQRES 12 H 220 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 220 VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 H 220 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 H 220 SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SER SEQRES 16 H 220 GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 H 220 THR LYS VAL ASP LYS LYS ILE VAL PRO ARG ASP CYS SEQRES 1 A 219 ASP LEU LEU MET ALA GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 A 219 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 A 219 GLN SER LEU VAL HIS SER SER GLY ASN THR TYR LEU GLU SEQRES 4 A 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 A 219 ILE TYR LYS ILE SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 A 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 A 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 A 219 TYR CYS PHE GLN THR SER HIS VAL PRO PRO THR PHE GLY SEQRES 9 A 219 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 A 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 A 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 A 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 A 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 A 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 A 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 A 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 A 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 B 220 GLU VAL MET LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 B 220 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLU SEQRES 3 B 220 PHE THR PHE SER THR TYR ILE MET SER TRP VAL ARG GLN SEQRES 4 B 220 THR PRO GLU LYS ARG LEU GLU TRP VAL ALA THR ILE SER SEQRES 5 B 220 SER SER GLY THR TYR THR TYR TYR ARG ASP SER VAL LYS SEQRES 6 B 220 GLY ARG PHE THR VAL SER ARG ASP ASN ALA ASN ASN ILE SEQRES 7 B 220 LEU TYR LEU GLN MET SER SER LEU ARG SER GLU ASP THR SEQRES 8 B 220 ALA LEU TYR TYR CYS ALA ARG ARG ASP TYR TYR ASP GLY SEQRES 9 B 220 PHE THR TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 B 220 ALA ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA SEQRES 11 B 220 PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR LEU SEQRES 12 B 220 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 B 220 VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 B 220 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 B 220 SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SER SEQRES 16 B 220 GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 B 220 THR LYS VAL ASP LYS LYS ILE VAL PRO ARG ASP CYS HET 9T0 H 301 45 HET 9T0 B 301 45 HETNAM 9T0 5-[(2R,3R)-2-[2,2-BIS(CHLORANYL)ETHANOYLAMINO]-3-(4- HETNAM 2 9T0 NITROPHENYL)-3-[OXIDANYL-[[4-[2,2,2-TRIS(FLUORANYL) HETNAM 3 9T0 ETHANOYLAMINO]PHENYL]METHYL]PHOSPHORYL]OXY-PROPOXY]-5- HETNAM 4 9T0 OXIDANYLIDENE-PENTANOIC ACID FORMUL 5 9T0 2(C25 H25 CL2 F3 N3 O11 P) FORMUL 7 HOH *313(H2 O) HELIX 1 AA1 GLU L 79 LEU L 83 5 5 HELIX 2 AA2 SER L 121 SER L 127 1 7 HELIX 3 AA3 LYS L 183 ARG L 188 1 6 HELIX 4 AA4 THR H 28 TYR H 32 5 5 HELIX 5 AA5 ASP H 61 LYS H 64 5 4 HELIX 6 AA6 ARG H 83 THR H 87 5 5 HELIX 7 AA7 TYR H 97 ASP H 99 5 3 HELIX 8 AA8 SER H 156 SER H 158 5 3 HELIX 9 AA9 PRO H 200 SER H 203 5 4 HELIX 10 AB1 GLU A 79 LEU A 83 5 5 HELIX 11 AB2 SER A 121 SER A 127 1 7 HELIX 12 AB3 LYS A 183 HIS A 189 1 7 HELIX 13 AB4 THR B 28 TYR B 32 5 5 HELIX 14 AB5 ASP B 61 LYS B 64 5 4 HELIX 15 AB6 ARG B 83 THR B 87 5 5 HELIX 16 AB7 TYR B 97 ASP B 99 5 3 HELIX 17 AB8 SER B 156 SER B 158 5 3 HELIX 18 AB9 PRO B 200 SER B 203 5 4 SHEET 1 AA1 4 MET L 4 THR L 7 0 SHEET 2 AA1 4 ALA L 19 SER L 25 -1 O ARG L 24 N ALA L 5 SHEET 3 AA1 4 ASP L 70 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 4 AA1 4 PHE L 62 SER L 67 -1 N SER L 63 O LYS L 74 SHEET 1 AA2 6 SER L 10 VAL L 13 0 SHEET 2 AA2 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA2 6 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 AA2 6 LEU L 33 GLN L 38 -1 N GLN L 38 O VAL L 85 SHEET 5 AA2 6 PRO L 44 TYR L 49 -1 O LYS L 45 N LEU L 37 SHEET 6 AA2 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA3 4 SER L 10 VAL L 13 0 SHEET 2 AA3 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA3 4 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 AA3 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AA4 4 THR L 114 PHE L 118 0 SHEET 2 AA4 4 GLY L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AA4 4 TYR L 173 THR L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AA4 4 VAL L 159 TRP L 163 -1 N LEU L 160 O THR L 178 SHEET 1 AA5 4 SER L 153 ARG L 155 0 SHEET 2 AA5 4 ASN L 145 ILE L 150 -1 N TRP L 148 O ARG L 155 SHEET 3 AA5 4 SER L 191 THR L 197 -1 O GLU L 195 N LYS L 147 SHEET 4 AA5 4 ILE L 205 ASN L 210 -1 O ILE L 205 N ALA L 196 SHEET 1 AA6 4 MET H 3 SER H 7 0 SHEET 2 AA6 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA6 4 ILE H 77 MET H 82 -1 O LEU H 80 N LEU H 20 SHEET 4 AA6 4 PHE H 67 ASP H 72 -1 N ASP H 72 O ILE H 77 SHEET 1 AA7 6 LEU H 11 VAL H 12 0 SHEET 2 AA7 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA7 6 ALA H 88 ARG H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA7 6 ILE H 33 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA7 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA7 6 THR H 57 TYR H 59 -1 O TYR H 58 N THR H 50 SHEET 1 AA8 4 LEU H 11 VAL H 12 0 SHEET 2 AA8 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA8 4 ALA H 88 ARG H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA8 4 PHE H 100A TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AA9 4 SER H 120 LEU H 124 0 SHEET 2 AA9 4 MET H 135 TYR H 145 -1 O LEU H 141 N TYR H 122 SHEET 3 AA9 4 LEU H 174 PRO H 184 -1 O LEU H 177 N VAL H 142 SHEET 4 AA9 4 VAL H 163 THR H 165 -1 N HIS H 164 O SER H 180 SHEET 1 AB1 4 SER H 120 LEU H 124 0 SHEET 2 AB1 4 MET H 135 TYR H 145 -1 O LEU H 141 N TYR H 122 SHEET 3 AB1 4 LEU H 174 PRO H 184 -1 O LEU H 177 N VAL H 142 SHEET 4 AB1 4 VAL H 169 GLN H 171 -1 N GLN H 171 O LEU H 174 SHEET 1 AB2 3 THR H 151 TRP H 154 0 SHEET 2 AB2 3 THR H 194 HIS H 199 -1 O ALA H 198 N THR H 151 SHEET 3 AB2 3 THR H 204 LYS H 209 -1 O VAL H 206 N VAL H 197 SHEET 1 AB3 4 MET A 4 THR A 7 0 SHEET 2 AB3 4 ALA A 19 SER A 25 -1 O SER A 22 N THR A 7 SHEET 3 AB3 4 ASP A 70 ILE A 75 -1 O PHE A 71 N CYS A 23 SHEET 4 AB3 4 PHE A 62 SER A 67 -1 N SER A 63 O LYS A 74 SHEET 1 AB4 6 SER A 10 VAL A 13 0 SHEET 2 AB4 6 THR A 102 ILE A 106 1 O GLU A 105 N LEU A 11 SHEET 3 AB4 6 GLY A 84 GLN A 90 -1 N TYR A 86 O THR A 102 SHEET 4 AB4 6 LEU A 33 GLN A 38 -1 N GLN A 38 O VAL A 85 SHEET 5 AB4 6 PRO A 44 TYR A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 AB4 6 ASN A 53 ARG A 54 -1 O ASN A 53 N TYR A 49 SHEET 1 AB5 4 SER A 10 VAL A 13 0 SHEET 2 AB5 4 THR A 102 ILE A 106 1 O GLU A 105 N LEU A 11 SHEET 3 AB5 4 GLY A 84 GLN A 90 -1 N TYR A 86 O THR A 102 SHEET 4 AB5 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 AB6 4 THR A 114 PHE A 118 0 SHEET 2 AB6 4 GLY A 129 PHE A 139 -1 O VAL A 133 N PHE A 118 SHEET 3 AB6 4 TYR A 173 THR A 182 -1 O MET A 175 N LEU A 136 SHEET 4 AB6 4 VAL A 159 TRP A 163 -1 N SER A 162 O SER A 176 SHEET 1 AB7 4 SER A 153 ARG A 155 0 SHEET 2 AB7 4 ILE A 144 ILE A 150 -1 N TRP A 148 O ARG A 155 SHEET 3 AB7 4 SER A 191 HIS A 198 -1 O GLU A 195 N LYS A 147 SHEET 4 AB7 4 ILE A 205 ASN A 210 -1 O ILE A 205 N ALA A 196 SHEET 1 AB8 4 MET B 3 SER B 7 0 SHEET 2 AB8 4 LEU B 18 SER B 25 -1 O ALA B 23 N VAL B 5 SHEET 3 AB8 4 ILE B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 AB8 4 PHE B 67 ASP B 72 -1 N ASP B 72 O ILE B 77 SHEET 1 AB9 6 LEU B 11 VAL B 12 0 SHEET 2 AB9 6 THR B 107 VAL B 111 1 O THR B 110 N VAL B 12 SHEET 3 AB9 6 ALA B 88 ARG B 95 -1 N ALA B 88 O VAL B 109 SHEET 4 AB9 6 ILE B 33 GLN B 39 -1 N VAL B 37 O TYR B 91 SHEET 5 AB9 6 LEU B 45 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 AB9 6 THR B 57 TYR B 59 -1 O TYR B 58 N THR B 50 SHEET 1 AC1 4 LEU B 11 VAL B 12 0 SHEET 2 AC1 4 THR B 107 VAL B 111 1 O THR B 110 N VAL B 12 SHEET 3 AC1 4 ALA B 88 ARG B 95 -1 N ALA B 88 O VAL B 109 SHEET 4 AC1 4 PHE B 100A TRP B 103 -1 O TYR B 102 N ARG B 94 SHEET 1 AC2 4 SER B 120 LEU B 124 0 SHEET 2 AC2 4 VAL B 136 TYR B 145 -1 O LYS B 143 N SER B 120 SHEET 3 AC2 4 LEU B 174 VAL B 183 -1 O VAL B 183 N VAL B 136 SHEET 4 AC2 4 VAL B 163 THR B 165 -1 N HIS B 164 O SER B 180 SHEET 1 AC3 4 SER B 120 LEU B 124 0 SHEET 2 AC3 4 VAL B 136 TYR B 145 -1 O LYS B 143 N SER B 120 SHEET 3 AC3 4 LEU B 174 VAL B 183 -1 O VAL B 183 N VAL B 136 SHEET 4 AC3 4 VAL B 169 GLN B 171 -1 N GLN B 171 O LEU B 174 SHEET 1 AC4 3 THR B 151 TRP B 154 0 SHEET 2 AC4 3 THR B 194 HIS B 199 -1 O ASN B 196 N THR B 153 SHEET 3 AC4 3 THR B 204 LYS B 209 -1 O THR B 204 N HIS B 199 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.12 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.14 SSBOND 3 CYS L 214 CYS H 215 1555 1555 2.05 SSBOND 4 CYS H 22 CYS H 92 1555 1555 2.06 SSBOND 5 CYS H 140 CYS H 195 1555 1555 2.08 SSBOND 6 CYS A 23 CYS A 88 1555 1555 2.09 SSBOND 7 CYS A 134 CYS A 194 1555 1555 2.06 SSBOND 8 CYS A 214 CYS B 215 1555 1555 2.05 SSBOND 9 CYS B 22 CYS B 92 1555 1555 2.09 SSBOND 10 CYS B 140 CYS B 195 1555 1555 2.03 CISPEP 1 THR L 7 PRO L 8 0 -8.62 CISPEP 2 VAL L 94 PRO L 95 0 -3.42 CISPEP 3 TYR L 140 PRO L 141 0 -0.27 CISPEP 4 PHE H 146 PRO H 147 0 -12.67 CISPEP 5 GLU H 148 PRO H 149 0 -4.11 CISPEP 6 TRP H 188 PRO H 189 0 6.40 CISPEP 7 THR A 7 PRO A 8 0 -3.38 CISPEP 8 VAL A 94 PRO A 95 0 7.61 CISPEP 9 TYR A 140 PRO A 141 0 1.33 CISPEP 10 PHE B 146 PRO B 147 0 -5.55 CISPEP 11 GLU B 148 PRO B 149 0 0.78 CISPEP 12 TRP B 188 PRO B 189 0 3.87 SITE 1 AC1 17 ILE H 33 SER H 35 TRP H 47 THR H 50 SITE 2 AC1 17 SER H 52 TYR H 56 TYR H 58 ARG H 95 SITE 3 AC1 17 TYR H 97 TYR H 98 PHE H 100A HOH H 402 SITE 4 AC1 17 HOH H 477 PHE L 89 THR L 91 VAL L 94 SITE 5 AC1 17 PRO L 96 SITE 1 AC2 14 PHE A 89 THR A 91 VAL A 94 PRO A 96 SITE 2 AC2 14 ILE B 33 SER B 35 TRP B 47 THR B 50 SITE 3 AC2 14 TYR B 56 TYR B 58 ARG B 95 TYR B 97 SITE 4 AC2 14 TYR B 98 PHE B 100A CRYST1 90.986 36.553 111.986 90.00 91.50 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010991 0.000000 0.000287 0.00000 SCALE2 0.000000 0.027358 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008933 0.00000