HEADER TRANSFERASE 24-JUL-18 6ABX TITLE CRYSTAL STRUCTURE OF CITRATE SYNTHASE (MSED_1522) FROM METALLOSPHAERA TITLE 2 SEDULA IN COMPLEX WITH CITRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CITRATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.3.3.16; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METALLOSPHAERA SEDULA (STRAIN ATCC 51363 / DSM SOURCE 3 5348 / JCM 9185 / NBRC 15509 / TH2); SOURCE 4 ORGANISM_TAXID: 399549; SOURCE 5 STRAIN: ATCC 51363 / DSM 5348 / JCM 9185 / NBRC 15509 / TH2; SOURCE 6 GENE: MSED_1522; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CITRATE SYNTHASE, METALLOSPHAERA SEDULA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.-H.LEE,H.-F.SON,K.-J.KIM REVDAT 2 22-NOV-23 6ABX 1 REMARK REVDAT 1 13-MAR-19 6ABX 0 JRNL AUTH S.H.LEE,H.F.SON,K.J.KIM JRNL TITL STRUCTURAL INSIGHTS INTO THE INHIBITION PROPERTIES OF JRNL TITL 2 ARCHAEON CITRATE SYNTHASE FROM METALLOSPHAERA SEDULA. JRNL REF PLOS ONE V. 14 12807 2019 JRNL REFN ESSN 1932-6203 JRNL PMID 30794680 JRNL DOI 10.1371/JOURNAL.PONE.0212807 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 75282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3916 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5256 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 276 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5918 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 593 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : 0.68000 REMARK 3 B33 (A**2) : -0.96000 REMARK 3 B12 (A**2) : 0.89000 REMARK 3 B13 (A**2) : 0.11000 REMARK 3 B23 (A**2) : 0.43000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.847 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6073 ; 0.014 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 5576 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8177 ; 1.688 ; 1.663 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13084 ; 1.082 ; 1.638 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 738 ; 5.987 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 324 ;33.459 ;21.235 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1122 ;14.261 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;19.468 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 791 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6750 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1106 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6ABX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1300008485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79198 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 72.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1VGP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 800MM SODIUM PHOSPHATE REMARK 280 MONOBASIC/1200MM POTASSIUM PHOSPHATE DIBASIC, 0.1 M SODIUM REMARK 280 ACETATE/ACETIC ACID PH 4.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 371 REMARK 465 GLU A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 465 LEU B 371 REMARK 465 GLU B 372 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 465 HIS B 375 REMARK 465 HIS B 376 REMARK 465 HIS B 377 REMARK 465 HIS B 378 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 577 O HOH B 749 2.14 REMARK 500 O HOH A 569 O HOH A 619 2.18 REMARK 500 O HOH B 686 O HOH B 707 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 41 -169.68 -100.52 REMARK 500 HIS A 179 40.10 -148.88 REMARK 500 GLU A 180 -129.55 65.06 REMARK 500 MET A 181 53.69 -102.61 REMARK 500 ALA A 217 50.43 -114.71 REMARK 500 GLU A 229 -53.18 76.24 REMARK 500 ILE A 255 -56.87 -124.60 REMARK 500 ASP A 346 69.71 -151.39 REMARK 500 ARG B 4 45.70 -105.38 REMARK 500 SER B 108 151.25 -42.85 REMARK 500 HIS B 179 50.13 -151.40 REMARK 500 GLU B 180 -141.55 58.46 REMARK 500 MET B 181 57.33 -95.78 REMARK 500 HIS B 214 -123.43 -136.12 REMARK 500 GLU B 229 -53.93 78.83 REMARK 500 ASN B 276 -175.62 -68.85 REMARK 500 ASP B 346 76.99 -152.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 4 0.13 SIDE CHAIN REMARK 500 ARG A 58 0.09 SIDE CHAIN REMARK 500 ARG A 157 0.12 SIDE CHAIN REMARK 500 ARG A 281 0.07 SIDE CHAIN REMARK 500 ARG A 288 0.13 SIDE CHAIN REMARK 500 ARG B 247 0.10 SIDE CHAIN REMARK 500 ARG B 254 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 799 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B 800 DISTANCE = 6.45 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 DBREF 6ABX A 1 370 UNP A4YGX6 A4YGX6_METS5 1 370 DBREF 6ABX B 1 370 UNP A4YGX6 A4YGX6_METS5 1 370 SEQADV 6ABX LEU A 371 UNP A4YGX6 EXPRESSION TAG SEQADV 6ABX GLU A 372 UNP A4YGX6 EXPRESSION TAG SEQADV 6ABX HIS A 373 UNP A4YGX6 EXPRESSION TAG SEQADV 6ABX HIS A 374 UNP A4YGX6 EXPRESSION TAG SEQADV 6ABX HIS A 375 UNP A4YGX6 EXPRESSION TAG SEQADV 6ABX HIS A 376 UNP A4YGX6 EXPRESSION TAG SEQADV 6ABX HIS A 377 UNP A4YGX6 EXPRESSION TAG SEQADV 6ABX HIS A 378 UNP A4YGX6 EXPRESSION TAG SEQADV 6ABX LEU B 371 UNP A4YGX6 EXPRESSION TAG SEQADV 6ABX GLU B 372 UNP A4YGX6 EXPRESSION TAG SEQADV 6ABX HIS B 373 UNP A4YGX6 EXPRESSION TAG SEQADV 6ABX HIS B 374 UNP A4YGX6 EXPRESSION TAG SEQADV 6ABX HIS B 375 UNP A4YGX6 EXPRESSION TAG SEQADV 6ABX HIS B 376 UNP A4YGX6 EXPRESSION TAG SEQADV 6ABX HIS B 377 UNP A4YGX6 EXPRESSION TAG SEQADV 6ABX HIS B 378 UNP A4YGX6 EXPRESSION TAG SEQRES 1 A 378 MET GLU LEU ARG LYS GLY LEU GLU ASP ILE ALA ILE LYS SEQRES 2 A 378 GLU THR SER ILE THR TYR ILE ASP GLY GLU LEU GLY ARG SEQRES 3 A 378 LEU TYR TYR ARG GLY TYR SER ILE PHE ASP LEU ALA SER SEQRES 4 A 378 PHE SER ASN PHE GLU GLU VAL ALA TYR LEU LEU TRP TYR SEQRES 5 A 378 GLY LYS LEU PRO THR ARG HIS GLU LEU ASP ASP PHE LYS SEQRES 6 A 378 SER ARG LEU ALA GLU GLU ARG SER ILE SER GLU ASP ILE SEQRES 7 A 378 SER THR PHE VAL LYS ARG THR ALA LYS PHE GLY ASN PRO SEQRES 8 A 378 MET ASP ILE LEU ARG THR THR VAL SER MET MET GLY LEU SEQRES 9 A 378 GLU ASP ARG SER GLU GLY ASP LEU ILE GLY LYS ALA ILE SEQRES 10 A 378 LYS MET THR ALA LYS ILE PRO THR ILE ILE SER LEU ILE SEQRES 11 A 378 GLN ARG THR ARG ARG ASN GLN GLU PHE VAL GLU PRO ASP SEQRES 12 A 378 PRO SER LEU SER HIS SER GLU ASN PHE LEU TYR MET ILE SEQRES 13 A 378 ARG GLY GLU ARG PRO SER PRO SER ASP THR ARG VAL LEU SEQRES 14 A 378 ASP VAL SER LEU MET LEU HIS MET ASP HIS GLU MET ASN SEQRES 15 A 378 ALA SER THR MET ALA CYS LEU VAL VAL ALA SER THR LEU SEQRES 16 A 378 SER ASP ILE TYR SER SER VAL VAL ALA GLY ILE SER ALA SEQRES 17 A 378 LEU LYS GLY PRO LEU HIS GLY GLY ALA ASN SER GLU ALA SEQRES 18 A 378 LEU LYS GLN PHE MET GLU ILE GLU THR PRO ASP ASN VAL SEQRES 19 A 378 GLU LYS TYR VAL MET ASN LYS LEU SER SER GLY GLN ARG SEQRES 20 A 378 LEU MET GLY PHE GLY HIS ARG ILE TYR LYS THR MET ASP SEQRES 21 A 378 PRO ARG ALA LYS ILE LEU LYS GLU TYR ALA ASN GLN LEU SEQRES 22 A 378 SER LYS ASN GLU GLU ILE LYS ARG LEU PHE GLU ILE ALA SEQRES 23 A 378 ASN ARG VAL GLU GLU ILE GLY ILE LYS ILE LEU GLY LYS SEQRES 24 A 378 ARG GLY ILE TYR PRO ASN VAL ASP PHE TYR SER GLY LEU SEQRES 25 A 378 VAL PHE TYR ALA MET GLY PHE ASP PRO ASP LEU PHE PRO SEQRES 26 A 378 THR ILE PHE ALA SER ALA ARG VAL ILE GLY TRP THR ALA SEQRES 27 A 378 HIS VAL ASP GLU TYR LEU LYS ASP ASN LYS LEU ILE ARG SEQRES 28 A 378 PRO LYS ALA ILE TYR VAL GLY ASP LEU GLY LYS ARG TYR SEQRES 29 A 378 VAL PRO ILE GLU GLU ARG LEU GLU HIS HIS HIS HIS HIS SEQRES 30 A 378 HIS SEQRES 1 B 378 MET GLU LEU ARG LYS GLY LEU GLU ASP ILE ALA ILE LYS SEQRES 2 B 378 GLU THR SER ILE THR TYR ILE ASP GLY GLU LEU GLY ARG SEQRES 3 B 378 LEU TYR TYR ARG GLY TYR SER ILE PHE ASP LEU ALA SER SEQRES 4 B 378 PHE SER ASN PHE GLU GLU VAL ALA TYR LEU LEU TRP TYR SEQRES 5 B 378 GLY LYS LEU PRO THR ARG HIS GLU LEU ASP ASP PHE LYS SEQRES 6 B 378 SER ARG LEU ALA GLU GLU ARG SER ILE SER GLU ASP ILE SEQRES 7 B 378 SER THR PHE VAL LYS ARG THR ALA LYS PHE GLY ASN PRO SEQRES 8 B 378 MET ASP ILE LEU ARG THR THR VAL SER MET MET GLY LEU SEQRES 9 B 378 GLU ASP ARG SER GLU GLY ASP LEU ILE GLY LYS ALA ILE SEQRES 10 B 378 LYS MET THR ALA LYS ILE PRO THR ILE ILE SER LEU ILE SEQRES 11 B 378 GLN ARG THR ARG ARG ASN GLN GLU PHE VAL GLU PRO ASP SEQRES 12 B 378 PRO SER LEU SER HIS SER GLU ASN PHE LEU TYR MET ILE SEQRES 13 B 378 ARG GLY GLU ARG PRO SER PRO SER ASP THR ARG VAL LEU SEQRES 14 B 378 ASP VAL SER LEU MET LEU HIS MET ASP HIS GLU MET ASN SEQRES 15 B 378 ALA SER THR MET ALA CYS LEU VAL VAL ALA SER THR LEU SEQRES 16 B 378 SER ASP ILE TYR SER SER VAL VAL ALA GLY ILE SER ALA SEQRES 17 B 378 LEU LYS GLY PRO LEU HIS GLY GLY ALA ASN SER GLU ALA SEQRES 18 B 378 LEU LYS GLN PHE MET GLU ILE GLU THR PRO ASP ASN VAL SEQRES 19 B 378 GLU LYS TYR VAL MET ASN LYS LEU SER SER GLY GLN ARG SEQRES 20 B 378 LEU MET GLY PHE GLY HIS ARG ILE TYR LYS THR MET ASP SEQRES 21 B 378 PRO ARG ALA LYS ILE LEU LYS GLU TYR ALA ASN GLN LEU SEQRES 22 B 378 SER LYS ASN GLU GLU ILE LYS ARG LEU PHE GLU ILE ALA SEQRES 23 B 378 ASN ARG VAL GLU GLU ILE GLY ILE LYS ILE LEU GLY LYS SEQRES 24 B 378 ARG GLY ILE TYR PRO ASN VAL ASP PHE TYR SER GLY LEU SEQRES 25 B 378 VAL PHE TYR ALA MET GLY PHE ASP PRO ASP LEU PHE PRO SEQRES 26 B 378 THR ILE PHE ALA SER ALA ARG VAL ILE GLY TRP THR ALA SEQRES 27 B 378 HIS VAL ASP GLU TYR LEU LYS ASP ASN LYS LEU ILE ARG SEQRES 28 B 378 PRO LYS ALA ILE TYR VAL GLY ASP LEU GLY LYS ARG TYR SEQRES 29 B 378 VAL PRO ILE GLU GLU ARG LEU GLU HIS HIS HIS HIS HIS SEQRES 30 B 378 HIS HET FLC A 401 13 HET GOL A 402 6 HET GOL A 403 6 HET FLC B 401 13 HET GOL B 402 6 HETNAM FLC CITRATE ANION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FLC 2(C6 H5 O7 3-) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 8 HOH *593(H2 O) HELIX 1 AA1 ARG A 4 GLU A 8 5 5 HELIX 2 AA2 ILE A 34 SER A 41 1 8 HELIX 3 AA3 ASN A 42 GLY A 53 1 12 HELIX 4 AA4 THR A 57 GLU A 70 1 14 HELIX 5 AA5 SER A 75 ALA A 86 1 12 HELIX 6 AA6 ASN A 90 ASP A 106 1 17 HELIX 7 AA7 ASP A 111 ARG A 135 1 25 HELIX 8 AA8 SER A 147 GLY A 158 1 12 HELIX 9 AA9 SER A 162 LEU A 175 1 14 HELIX 10 AB1 ASN A 182 SER A 193 1 12 HELIX 11 AB2 ASP A 197 LYS A 210 1 14 HELIX 12 AB3 SER A 219 GLU A 229 1 11 HELIX 13 AB4 THR A 230 ASP A 232 5 3 HELIX 14 AB5 ASN A 233 SER A 244 1 12 HELIX 15 AB6 ASP A 260 ASN A 271 1 12 HELIX 16 AB7 ASN A 276 GLY A 298 1 23 HELIX 17 AB8 LYS A 299 GLY A 301 5 3 HELIX 18 AB9 ASN A 305 PHE A 308 5 4 HELIX 19 AC1 TYR A 309 MET A 317 1 9 HELIX 20 AC2 ASP A 320 ASP A 322 5 3 HELIX 21 AC3 LEU A 323 LEU A 344 1 22 HELIX 22 AC4 LYS A 345 ASN A 347 5 3 HELIX 23 AC5 PRO A 366 ARG A 370 5 5 HELIX 24 AC6 ARG B 4 GLU B 8 5 5 HELIX 25 AC7 ILE B 34 SER B 41 1 8 HELIX 26 AC8 ASN B 42 GLY B 53 1 12 HELIX 27 AC9 THR B 57 GLU B 70 1 14 HELIX 28 AD1 SER B 75 ALA B 86 1 12 HELIX 29 AD2 ASN B 90 ASP B 106 1 17 HELIX 30 AD3 ASP B 111 ARG B 135 1 25 HELIX 31 AD4 SER B 147 GLY B 158 1 12 HELIX 32 AD5 SER B 162 MET B 177 1 16 HELIX 33 AD6 ASN B 182 THR B 194 1 13 HELIX 34 AD7 ASP B 197 LYS B 210 1 14 HELIX 35 AD8 GLY B 216 GLU B 229 1 14 HELIX 36 AD9 THR B 230 ASP B 232 5 3 HELIX 37 AE1 ASN B 233 SER B 244 1 12 HELIX 38 AE2 ASP B 260 ASN B 271 1 12 HELIX 39 AE3 ASN B 276 GLY B 298 1 23 HELIX 40 AE4 LYS B 299 GLY B 301 5 3 HELIX 41 AE5 VAL B 306 MET B 317 1 12 HELIX 42 AE6 ASP B 320 ASP B 322 5 3 HELIX 43 AE7 LEU B 323 LYS B 345 1 23 HELIX 44 AE8 PRO B 366 ARG B 370 5 5 SHEET 1 AA1 2 ALA A 11 THR A 15 0 SHEET 2 AA1 2 LYS B 353 TYR B 356 1 O ILE B 355 N THR A 15 SHEET 1 AA2 3 THR A 18 ASP A 21 0 SHEET 2 AA2 3 ARG A 26 TYR A 29 -1 O ARG A 26 N ASP A 21 SHEET 3 AA2 3 TYR A 32 SER A 33 -1 O TYR A 32 N TYR A 29 SHEET 1 AA3 2 LYS A 353 TYR A 356 0 SHEET 2 AA3 2 ALA B 11 THR B 15 1 O THR B 15 N ILE A 355 SHEET 1 AA4 3 THR B 18 ASP B 21 0 SHEET 2 AA4 3 ARG B 26 TYR B 29 -1 O ARG B 26 N ASP B 21 SHEET 3 AA4 3 TYR B 32 SER B 33 -1 O TYR B 32 N TYR B 29 SITE 1 AC1 15 HIS A 179 ASN A 182 HIS A 214 GLY A 215 SITE 2 AC1 15 GLY A 216 HIS A 253 ARG A 262 ASN A 305 SITE 3 AC1 15 VAL A 306 ARG A 332 GOL A 403 HOH A 505 SITE 4 AC1 15 HOH A 553 HOH A 639 ARG B 351 SITE 1 AC2 8 LYS A 65 ALA A 69 PRO A 144 LEU A 146 SITE 2 AC2 8 SER A 147 HOH A 507 HOH A 520 HOH A 606 SITE 1 AC3 8 GLY A 215 GLY A 216 GLY A 250 PHE A 251 SITE 2 AC3 8 ASN A 305 ASP A 307 FLC A 401 HOH A 553 SITE 1 AC4 12 ARG A 351 HIS B 179 ASN B 182 HIS B 214 SITE 2 AC4 12 HIS B 253 ARG B 262 ASP B 307 ARG B 332 SITE 3 AC4 12 HOH B 595 HOH B 608 HOH B 631 HOH B 646 SITE 1 AC5 7 LYS B 65 SER B 66 PRO B 144 LEU B 146 SITE 2 AC5 7 SER B 147 HOH B 593 HOH B 605 CRYST1 50.181 53.522 76.285 93.56 105.73 102.16 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019928 0.004294 0.006206 0.00000 SCALE2 0.000000 0.019113 0.002440 0.00000 SCALE3 0.000000 0.000000 0.013729 0.00000