HEADER TOXIN 26-JUL-18 6ACI TITLE CRYSTAL STRUCTURE OF EPEC EFFECTOR NLEB IN COMPLEX WITH FADD DEATH TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: T3SS SECRETED EFFECTOR NLEB HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FAS-ASSOCIATED DEATH DOMAIN PROTEIN; COMPND 8 CHAIN: H; COMPND 9 SYNONYM: FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN,GROWTH- COMPND 10 INHIBITING GENE 3 PROTEIN,MEDIATOR OF RECEPTOR INDUCED TOXICITY, COMPND 11 PROTEIN FADD; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O127:H6; SOURCE 3 ORGANISM_TAXID: 574521; SOURCE 4 STRAIN: E2348/69 / EPEC; SOURCE 5 GENE: E2348C_3231; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PSUMO; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: FADD, MORT1, GIG3; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PGEX6P KEYWDS TOXIN, GLYCOSYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.DING,F.SHAO REVDAT 2 26-JUN-19 6ACI 1 JRNL REVDAT 1 01-MAY-19 6ACI 0 JRNL AUTH J.DING,X.PAN,L.DU,Q.YAO,J.XUE,H.YAO,D.C.WANG,S.LI,F.SHAO JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO HOST DEATH DOMAINS JRNL TITL 2 INACTIVATION BY THE BACTERIAL ARGININE GLCNACYLTRANSFERASE JRNL TITL 3 EFFECTOR. JRNL REF MOL.CELL V. 74 922 2019 JRNL REFN ISSN 1097-2765 JRNL PMID 30979585 JRNL DOI 10.1016/J.MOLCEL.2019.03.028 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 50377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5957 - 4.8971 0.93 2685 109 0.1786 0.2186 REMARK 3 2 4.8971 - 3.8884 1.00 2739 143 0.1299 0.1873 REMARK 3 3 3.8884 - 3.3973 1.00 2672 162 0.1415 0.1695 REMARK 3 4 3.3973 - 3.0868 1.00 2719 133 0.1628 0.2047 REMARK 3 5 3.0868 - 2.8657 1.00 2660 139 0.1726 0.2222 REMARK 3 6 2.8657 - 2.6968 1.00 2672 151 0.1880 0.2656 REMARK 3 7 2.6968 - 2.5618 1.00 2655 131 0.1857 0.2248 REMARK 3 8 2.5618 - 2.4503 1.00 2686 129 0.1747 0.2073 REMARK 3 9 2.4503 - 2.3560 1.00 2630 142 0.1646 0.1908 REMARK 3 10 2.3560 - 2.2747 1.00 2638 169 0.1682 0.2384 REMARK 3 11 2.2747 - 2.2036 1.00 2651 146 0.1656 0.2136 REMARK 3 12 2.2036 - 2.1406 1.00 2633 142 0.1609 0.2068 REMARK 3 13 2.1406 - 2.0842 1.00 2647 147 0.1624 0.1952 REMARK 3 14 2.0842 - 2.0334 1.00 2629 125 0.1797 0.2415 REMARK 3 15 2.0334 - 1.9872 1.00 2637 146 0.1752 0.2360 REMARK 3 16 1.9872 - 1.9449 1.00 2617 151 0.1855 0.2111 REMARK 3 17 1.9449 - 1.9060 1.00 2635 151 0.1950 0.2185 REMARK 3 18 1.9060 - 1.8700 1.00 2609 147 0.2125 0.2628 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 3261 REMARK 3 ANGLE : 1.603 4415 REMARK 3 CHIRALITY : 0.085 477 REMARK 3 PLANARITY : 0.009 573 REMARK 3 DIHEDRAL : 14.125 1225 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ACI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1300008534. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97899 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50430 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 36.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 0.47300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6E66 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.5 M SODIUM CHLORIDE, 100 MM HEPES PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.62700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 97.25400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 97.25400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.62700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 502 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 768 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 829 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 857 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 858 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 219 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 GLY H 93 REMARK 465 GLU H 94 REMARK 465 GLU H 95 REMARK 465 ALA H 183 REMARK 465 ARG H 184 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 254 O HOH A 501 2.03 REMARK 500 O HOH A 503 O HOH A 776 2.14 REMARK 500 O HOH A 785 O HOH H 246 2.17 REMARK 500 OE2 GLU H 143 NH2 ARG H 146 2.19 REMARK 500 O HOH A 550 O HOH A 723 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 208 O HOH H 236 6555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 252 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG A 293 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 66 53.56 -156.36 REMARK 500 ALA A 196 -122.24 51.88 REMARK 500 ASP A 237 25.65 48.34 REMARK 500 THR A 325 -93.48 -122.75 REMARK 500 LYS H 153 -110.61 55.82 REMARK 500 MET H 170 65.14 -111.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 858 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 859 DISTANCE = 6.57 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 223 OD2 REMARK 620 2 ASN A 320 OD1 89.3 REMARK 620 3 SER A 322 OG 80.1 82.6 REMARK 620 4 UDP A 401 O1A 88.1 177.2 95.8 REMARK 620 5 UDP A 401 O1B 174.0 93.3 94.8 89.2 REMARK 620 6 HOH A 543 O 86.4 89.9 164.7 91.1 99.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6E66 RELATED DB: PDB REMARK 900 RELATED ID: 6AC0 RELATED DB: PDB REMARK 900 RELATED ID: 6AC5 RELATED DB: PDB DBREF 6ACI A 28 329 UNP B7UI21 B7UI21_ECO27 28 329 DBREF 6ACI H 93 184 UNP Q13158 FADD_HUMAN 93 184 SEQADV 6ACI SER A -3 UNP B7UI21 EXPRESSION TAG SEQADV 6ACI GLY A -2 UNP B7UI21 EXPRESSION TAG SEQADV 6ACI ARG A -1 UNP B7UI21 EXPRESSION TAG SEQADV 6ACI PRO A 0 UNP B7UI21 EXPRESSION TAG SEQADV 6ACI ALA A 115 UNP B7UI21 LYS 115 ENGINEERED MUTATION SEQRES 1 A 306 SER GLY ARG PRO SER PHE ALA GLY LYS GLU TYR SER LEU SEQRES 2 A 306 GLU PRO ILE ASP GLU ARG THR PRO ILE LEU PHE GLN TRP SEQRES 3 A 306 PHE GLU ALA ARG PRO GLU ARG TYR GLU LYS GLY GLU VAL SEQRES 4 A 306 PRO ILE LEU ASN THR LYS GLU HIS PRO TYR LEU SER ASN SEQRES 5 A 306 ILE ILE ASN ALA ALA LYS ILE GLU ASN GLU ARG ILE ILE SEQRES 6 A 306 GLY VAL LEU VAL ASP GLY ASN PHE THR TYR GLU GLN LYS SEQRES 7 A 306 LYS GLU PHE LEU ASN LEU GLU ASN GLU HIS GLN ASN ILE SEQRES 8 A 306 ALA ILE ILE TYR ARG ALA ASP VAL ASP PHE SER MET TYR SEQRES 9 A 306 ASP LYS LYS LEU SER ASP ILE TYR LEU GLU ASN ILE HIS SEQRES 10 A 306 LYS GLN GLU SER TYR PRO ALA SER GLU ARG ASP ASN TYR SEQRES 11 A 306 LEU LEU GLY LEU LEU ARG GLU GLU LEU LYS ASN ILE PRO SEQRES 12 A 306 GLU GLY LYS ASP SER LEU ILE GLU SER TYR ALA GLU LYS SEQRES 13 A 306 ARG GLU HIS THR TRP PHE ASP PHE PHE ARG ASN LEU ALA SEQRES 14 A 306 ILE LEU LYS ALA GLY SER LEU PHE THR GLU THR GLY LYS SEQRES 15 A 306 THR GLY CYS HIS ASN ILE SER PRO CYS SER GLY CYS ILE SEQRES 16 A 306 TYR LEU ASP ALA ASP MET ILE ILE THR ASP LYS LEU GLY SEQRES 17 A 306 VAL LEU TYR ALA PRO ASP GLY ILE ALA VAL HIS VAL ASP SEQRES 18 A 306 CYS ASN ASP GLU ILE LYS SER LEU GLU ASN GLY ALA ILE SEQRES 19 A 306 VAL VAL ASN ARG SER ASN HIS PRO ALA LEU LEU ALA GLY SEQRES 20 A 306 LEU ASP ILE MET LYS SER LYS VAL ASP ALA HIS PRO TYR SEQRES 21 A 306 TYR ASP GLY LEU GLY LYS GLY ILE LYS ARG HIS PHE ASN SEQRES 22 A 306 TYR SER SER LEU HIS ASN TYR ASN ALA PHE CYS ASP PHE SEQRES 23 A 306 ILE GLU PHE LYS HIS GLU ASN ILE ILE PRO ASN THR SER SEQRES 24 A 306 MET TYR THR SER SER SER TRP SEQRES 1 H 92 GLY GLU GLU ASP LEU CYS ALA ALA PHE ASN VAL ILE CYS SEQRES 2 H 92 ASP ASN VAL GLY LYS ASP TRP ARG ARG LEU ALA ARG GLN SEQRES 3 H 92 LEU LYS VAL SER ASP THR LYS ILE ASP SER ILE GLU ASP SEQRES 4 H 92 ARG TYR PRO ARG ASN LEU THR GLU ARG VAL ARG GLU SER SEQRES 5 H 92 LEU ARG ILE TRP LYS ASN THR GLU LYS GLU ASN ALA THR SEQRES 6 H 92 VAL ALA HIS LEU VAL GLY ALA LEU ARG SER CYS GLN MET SEQRES 7 H 92 ASN LEU VAL ALA ASP LEU VAL GLN GLU VAL GLN GLN ALA SEQRES 8 H 92 ARG HET UDP A 401 25 HET MN A 402 1 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM MN MANGANESE (II) ION FORMUL 3 UDP C9 H14 N2 O12 P2 FORMUL 4 MN MN 2+ FORMUL 5 HOH *436(H2 O) HELIX 1 AA1 ARG A 53 TYR A 57 5 5 HELIX 2 AA2 PRO A 71 GLU A 83 1 13 HELIX 3 AA3 THR A 97 HIS A 111 1 15 HELIX 4 AA4 ALA A 120 VAL A 122 5 3 HELIX 5 AA5 PHE A 124 ASP A 128 5 5 HELIX 6 AA6 LYS A 130 TYR A 145 1 16 HELIX 7 AA7 PRO A 146 ARG A 150 5 5 HELIX 8 AA8 ASP A 151 ASN A 164 1 14 HELIX 9 AA9 SER A 171 GLU A 178 1 8 HELIX 10 AB1 GLU A 181 ALA A 196 1 16 HELIX 11 AB2 ALA A 196 GLU A 202 1 7 HELIX 12 AB3 GLY A 207 ILE A 211 5 5 HELIX 13 AB4 HIS A 264 LYS A 275 1 12 HELIX 14 AB5 LEU A 287 PHE A 295 1 9 HELIX 15 AB6 ASN A 302 GLU A 311 1 10 HELIX 16 AB7 ASN A 320 THR A 325 5 6 HELIX 17 AB8 LEU H 97 VAL H 108 1 12 HELIX 18 AB9 ASP H 111 LEU H 119 1 9 HELIX 19 AC1 SER H 122 TYR H 133 1 12 HELIX 20 AC2 ASN H 136 LYS H 153 1 18 HELIX 21 AC3 GLU H 154 ALA H 156 5 3 HELIX 22 AC4 THR H 157 CYS H 168 1 12 HELIX 23 AC5 MET H 170 GLN H 182 1 13 SHEET 1 AA1 2 SER A 28 PHE A 29 0 SHEET 2 AA1 2 LYS A 32 GLU A 33 -1 O LYS A 32 N PHE A 29 SHEET 1 AA2 2 LEU A 36 ILE A 39 0 SHEET 2 AA2 2 LEU A 233 PRO A 236 -1 O LEU A 233 N ILE A 39 SHEET 1 AA3 6 ILE A 114 TYR A 118 0 SHEET 2 AA3 6 ILE A 88 ASP A 93 1 N VAL A 90 O ILE A 117 SHEET 3 AA3 6 ILE A 45 PHE A 50 1 N ILE A 45 O GLY A 89 SHEET 4 AA3 6 CYS A 217 LEU A 220 1 O ILE A 218 N LEU A 46 SHEET 5 AA3 6 ILE A 249 VAL A 259 -1 O ILE A 257 N TYR A 219 SHEET 6 AA3 6 ILE A 239 ASN A 246 -1 N HIS A 242 O GLU A 253 SHEET 1 AA4 2 ILE A 225 ILE A 226 0 SHEET 2 AA4 2 ILE A 317 ILE A 318 -1 O ILE A 318 N ILE A 225 LINK OD2 ASP A 223 MN MN A 402 1555 1555 2.20 LINK OD1 ASN A 320 MN MN A 402 1555 1555 2.06 LINK OG SER A 322 MN MN A 402 1555 1555 2.28 LINK O1A UDP A 401 MN MN A 402 1555 1555 2.13 LINK O1B UDP A 401 MN MN A 402 1555 1555 2.16 LINK MN MN A 402 O HOH A 543 1555 1555 2.13 SITE 1 AC1 23 GLN A 48 TRP A 49 PHE A 50 TYR A 72 SITE 2 AC1 23 PHE A 185 ARG A 189 TYR A 219 ASP A 221 SITE 3 AC1 23 ALA A 222 ASP A 223 ASN A 320 SER A 322 SITE 4 AC1 23 SER A 327 SER A 328 TRP A 329 MN A 402 SITE 5 AC1 23 HOH A 521 HOH A 543 HOH A 548 HOH A 579 SITE 6 AC1 23 HOH A 608 HOH A 633 HOH A 662 SITE 1 AC2 5 ASP A 223 ASN A 320 SER A 322 UDP A 401 SITE 2 AC2 5 HOH A 543 CRYST1 84.590 84.590 145.881 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011822 0.006825 0.000000 0.00000 SCALE2 0.000000 0.013651 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006855 0.00000