HEADER VIRUS 02-AUG-18 6ADS TITLE STRUCTURE OF SENECA VALLEY VIRUS IN ACIDIC CONDITIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: VP3; COMPND 6 CHAIN: C; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: VP2; COMPND 9 CHAIN: B; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: VP4; COMPND 12 CHAIN: D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SENECA VALLEY VIRUS; SOURCE 3 ORGANISM_TAXID: 390157; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: SENECA VALLEY VIRUS; SOURCE 6 ORGANISM_TAXID: 390157; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: SENECA VALLEY VIRUS; SOURCE 9 ORGANISM_TAXID: 390157; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: SENECA VALLEY VIRUS; SOURCE 12 ORGANISM_TAXID: 390157 KEYWDS SENECA VALLEY VIRUS, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR Z.Y.LOU,L.CAO REVDAT 2 27-MAR-24 6ADS 1 REMARK REVDAT 1 06-FEB-19 6ADS 0 JRNL AUTH L.CAO,R.ZHANG,T.LIU,Z.SUN,M.HU,Y.SUN,L.CHENG,Y.GUO,S.FU, JRNL AUTH 2 J.HU,X.LI,C.YU,H.WANG,H.CHEN,X.LI,E.E.FRY,D.I.STUART,P.QIAN, JRNL AUTH 3 Z.LOU,Z.RAO JRNL TITL SENECA VALLEY VIRUS ATTACHMENT AND UNCOATING MEDIATED BY ITS JRNL TITL 2 RECEPTOR ANTHRAX TOXIN RECEPTOR 1 JRNL REF PROC. NATL. ACAD. SCI. V. 115 13087 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30514821 JRNL DOI 10.1073/PNAS.1814309115 REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.840 REMARK 3 NUMBER OF PARTICLES : 13010 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6ADS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1300008594. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SENECA VALLEY VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI ARCTICA REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 163.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.361803 0.587785 0.723607 -199.74263 REMARK 350 BIOMT2 2 -0.262866 0.809017 -0.525731 291.37236 REMARK 350 BIOMT3 2 -0.894427 0.000000 0.447214 430.77543 REMARK 350 BIOMT1 3 -0.670820 0.688191 0.276393 210.96621 REMARK 350 BIOMT2 3 0.162460 0.500000 -0.850651 353.13098 REMARK 350 BIOMT3 3 -0.723607 -0.525731 -0.447214 802.07929 REMARK 350 BIOMT1 4 -0.670820 0.162460 -0.723607 664.54087 REMARK 350 BIOMT2 4 0.688191 0.500000 -0.525731 99.92754 REMARK 350 BIOMT3 4 0.276393 -0.850651 -0.447214 600.78228 REMARK 350 BIOMT1 5 0.361803 -0.262866 -0.894427 534.15658 REMARK 350 BIOMT2 5 0.587785 0.809017 0.000000 -118.31941 REMARK 350 BIOMT3 5 0.723607 -0.525731 0.447214 105.07001 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 596.39978 REMARK 350 BIOMT2 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 593.56500 REMARK 350 BIOMT1 7 -0.361803 -0.587785 -0.723607 796.14242 REMARK 350 BIOMT2 7 -0.262866 0.809017 -0.525731 291.37236 REMARK 350 BIOMT3 7 0.894427 0.000000 -0.447214 162.78958 REMARK 350 BIOMT1 8 0.670820 -0.688191 -0.276393 385.43357 REMARK 350 BIOMT2 8 0.162460 0.500000 -0.850651 353.13098 REMARK 350 BIOMT3 8 0.723607 0.525731 0.447214 -208.51429 REMARK 350 BIOMT1 9 0.670820 -0.162460 0.723607 -68.14108 REMARK 350 BIOMT2 9 0.688191 0.500000 -0.525731 99.92754 REMARK 350 BIOMT3 9 -0.276393 0.850651 0.447214 -7.21727 REMARK 350 BIOMT1 10 -0.361803 0.262866 0.894427 62.24320 REMARK 350 BIOMT2 10 0.587785 0.809017 0.000000 -118.31941 REMARK 350 BIOMT3 10 -0.723607 0.525731 -0.447214 488.49499 REMARK 350 BIOMT1 11 -0.447214 0.000000 -0.894427 697.00929 REMARK 350 BIOMT2 11 0.000000 -1.000000 0.000000 596.47280 REMARK 350 BIOMT3 11 -0.894427 0.000000 0.447214 430.77539 REMARK 350 BIOMT1 12 0.638197 -0.262866 -0.723607 401.03968 REMARK 350 BIOMT2 12 0.262866 -0.809017 0.525731 305.10044 REMARK 350 BIOMT3 12 -0.723607 -0.525731 -0.447214 802.07929 REMARK 350 BIOMT1 13 0.947214 0.162460 0.276393 -114.73919 REMARK 350 BIOMT2 13 -0.162460 -0.500000 0.850651 243.34182 REMARK 350 BIOMT3 13 0.276393 -0.850651 -0.447214 600.78231 REMARK 350 BIOMT1 14 0.052786 0.688191 0.723607 -137.53845 REMARK 350 BIOMT2 14 -0.688191 -0.500000 0.525731 496.54526 REMARK 350 BIOMT3 14 0.723607 -0.525731 0.447214 105.07004 REMARK 350 BIOMT1 15 -0.809017 0.587785 0.000000 364.14969 REMARK 350 BIOMT2 15 -0.587785 -0.809017 0.000000 714.79221 REMARK 350 BIOMT3 15 0.000000 0.000000 1.000000 -0.00001 REMARK 350 BIOMT1 16 0.447214 0.000000 0.894427 -100.60950 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 596.47280 REMARK 350 BIOMT3 16 0.894427 0.000000 -0.447214 162.78961 REMARK 350 BIOMT1 17 -0.638197 0.262866 0.723607 195.36010 REMARK 350 BIOMT2 17 0.262866 -0.809017 0.525731 305.10044 REMARK 350 BIOMT3 17 0.723607 0.525731 0.447214 -208.51428 REMARK 350 BIOMT1 18 -0.947214 -0.162460 -0.276393 711.13897 REMARK 350 BIOMT2 18 -0.162460 -0.500000 0.850651 243.34182 REMARK 350 BIOMT3 18 -0.276393 0.850651 0.447214 -7.21730 REMARK 350 BIOMT1 19 -0.052786 -0.688191 -0.723607 733.93824 REMARK 350 BIOMT2 19 -0.688191 -0.500000 0.525731 496.54526 REMARK 350 BIOMT3 19 -0.723607 0.525731 -0.447214 488.49497 REMARK 350 BIOMT1 20 0.809017 -0.587785 0.000000 232.25009 REMARK 350 BIOMT2 20 -0.587785 -0.809017 0.000000 714.79221 REMARK 350 BIOMT3 20 0.000000 0.000000 -1.000000 593.56502 REMARK 350 BIOMT1 21 0.447214 0.850651 0.276393 -170.88285 REMARK 350 BIOMT2 21 0.525731 0.000000 -0.850651 393.92173 REMARK 350 BIOMT3 21 -0.723607 0.525731 -0.447214 488.49500 REMARK 350 BIOMT1 22 -0.309017 0.951057 0.000000 106.70906 REMARK 350 BIOMT2 22 0.951057 0.309017 0.000000 -77.52866 REMARK 350 BIOMT3 22 0.000000 0.000000 -1.000000 593.56502 REMARK 350 BIOMT1 23 -0.361803 0.587785 -0.723607 445.54450 REMARK 350 BIOMT2 23 0.262866 0.809017 0.525731 -177.45619 REMARK 350 BIOMT3 23 0.894427 0.000000 -0.447214 162.78959 REMARK 350 BIOMT1 24 0.361803 0.262866 -0.894427 377.36441 REMARK 350 BIOMT2 24 -0.587785 0.809017 0.000000 232.23558 REMARK 350 BIOMT3 24 0.723607 0.525731 0.447214 -208.51429 REMARK 350 BIOMT1 25 0.861803 0.425325 -0.276393 -3.60864 REMARK 350 BIOMT2 25 -0.425325 0.309017 -0.850651 585.36655 REMARK 350 BIOMT3 25 -0.276393 0.850651 0.447214 -7.21728 REMARK 350 BIOMT1 26 -0.447214 0.850651 -0.276393 259.89255 REMARK 350 BIOMT2 26 -0.525731 0.000000 0.850651 202.55107 REMARK 350 BIOMT3 26 0.723607 0.525731 0.447214 -208.51429 REMARK 350 BIOMT1 27 -0.138197 0.425325 -0.894427 478.01292 REMARK 350 BIOMT2 27 -0.951057 -0.309017 0.000000 674.00146 REMARK 350 BIOMT3 27 -0.276393 0.850651 0.447214 -7.21730 REMARK 350 BIOMT1 28 0.638197 0.262866 -0.723607 244.24752 REMARK 350 BIOMT2 28 -0.262866 -0.809017 -0.525731 773.92899 REMARK 350 BIOMT3 28 -0.723607 0.525731 -0.447214 488.49498 REMARK 350 BIOMT1 29 0.809017 0.587785 0.000000 -118.34783 REMARK 350 BIOMT2 29 0.587785 -0.809017 0.000000 364.23722 REMARK 350 BIOMT3 29 0.000000 0.000000 -1.000000 593.56503 REMARK 350 BIOMT1 30 0.138197 0.951057 0.276393 -108.67866 REMARK 350 BIOMT2 30 0.425325 -0.309017 0.850651 11.10625 REMARK 350 BIOMT3 30 0.894427 0.000000 -0.447214 162.78961 REMARK 350 BIOMT1 31 -0.447214 -0.850651 -0.276393 767.28263 REMARK 350 BIOMT2 31 0.525731 0.000000 -0.850651 393.92173 REMARK 350 BIOMT3 31 0.723607 -0.525731 0.447214 105.07000 REMARK 350 BIOMT1 32 0.309017 -0.951057 0.000000 489.69072 REMARK 350 BIOMT2 32 0.951057 0.309017 0.000000 -77.52866 REMARK 350 BIOMT3 32 0.000000 0.000000 1.000000 -0.00002 REMARK 350 BIOMT1 33 0.361803 -0.587785 0.723607 150.85528 REMARK 350 BIOMT2 33 0.262866 0.809017 0.525731 -177.45619 REMARK 350 BIOMT3 33 -0.894427 0.000000 0.447214 430.77541 REMARK 350 BIOMT1 34 -0.361803 -0.262866 0.894427 219.03537 REMARK 350 BIOMT2 34 -0.587785 0.809017 0.000000 232.23558 REMARK 350 BIOMT3 34 -0.723607 -0.525731 -0.447214 802.07929 REMARK 350 BIOMT1 35 -0.861803 -0.425325 0.276393 600.00842 REMARK 350 BIOMT2 35 -0.425325 0.309017 -0.850651 585.36655 REMARK 350 BIOMT3 35 0.276393 -0.850651 -0.447214 600.78228 REMARK 350 BIOMT1 36 0.447214 -0.850651 0.276393 336.50724 REMARK 350 BIOMT2 36 -0.525731 0.000000 0.850651 202.55107 REMARK 350 BIOMT3 36 -0.723607 -0.525731 -0.447214 802.07929 REMARK 350 BIOMT1 37 0.138197 -0.425325 0.894427 118.38686 REMARK 350 BIOMT2 37 -0.951057 -0.309017 0.000000 674.00146 REMARK 350 BIOMT3 37 0.276393 -0.850651 -0.447214 600.78230 REMARK 350 BIOMT1 38 -0.638197 -0.262866 0.723607 352.15227 REMARK 350 BIOMT2 38 -0.262866 -0.809017 -0.525731 773.92899 REMARK 350 BIOMT3 38 0.723607 -0.525731 0.447214 105.07002 REMARK 350 BIOMT1 39 -0.809017 -0.587785 0.000000 714.74761 REMARK 350 BIOMT2 39 0.587785 -0.809017 0.000000 364.23722 REMARK 350 BIOMT3 39 0.000000 0.000000 1.000000 -0.00003 REMARK 350 BIOMT1 40 -0.138197 -0.951057 -0.276393 705.07845 REMARK 350 BIOMT2 40 0.425325 -0.309017 0.850651 11.10625 REMARK 350 BIOMT3 40 -0.894427 0.000000 0.447214 430.77539 REMARK 350 BIOMT1 41 0.447214 0.525731 -0.723607 222.80255 REMARK 350 BIOMT2 41 0.850651 0.000000 0.525731 -111.45537 REMARK 350 BIOMT3 41 0.276393 -0.850651 -0.447214 600.78229 REMARK 350 BIOMT1 42 0.670820 0.688191 -0.276393 -25.05360 REMARK 350 BIOMT2 42 -0.162460 0.500000 0.850651 -54.89458 REMARK 350 BIOMT3 42 0.723607 -0.525731 0.447214 105.07003 REMARK 350 BIOMT1 43 0.309017 0.951057 0.000000 -77.58862 REMARK 350 BIOMT2 43 -0.951057 0.309017 0.000000 489.68122 REMARK 350 BIOMT3 43 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 44 -0.138197 0.951057 -0.276393 137.79910 REMARK 350 BIOMT2 44 -0.425325 -0.309017 -0.850651 769.68679 REMARK 350 BIOMT3 44 -0.894427 0.000000 0.447214 430.77541 REMARK 350 BIOMT1 45 -0.052786 0.688191 -0.723607 323.45106 REMARK 350 BIOMT2 45 0.688191 -0.500000 -0.525731 398.16394 REMARK 350 BIOMT3 45 -0.723607 -0.525731 -0.447214 802.07929 REMARK 350 BIOMT1 46 -0.447214 0.525731 0.723607 60.01294 REMARK 350 BIOMT2 46 -0.850651 0.000000 -0.525731 707.92817 REMARK 350 BIOMT3 46 -0.276393 -0.850651 0.447214 500.17279 REMARK 350 BIOMT1 47 -0.947214 0.162460 -0.276393 614.23611 REMARK 350 BIOMT2 47 0.162460 -0.500000 -0.850651 651.36738 REMARK 350 BIOMT3 47 -0.276393 -0.850651 0.447214 500.17277 REMARK 350 BIOMT1 48 -0.138197 -0.425325 -0.894427 731.70798 REMARK 350 BIOMT2 48 0.951057 -0.309017 0.000000 106.79158 REMARK 350 BIOMT3 48 -0.276393 -0.850651 0.447214 500.17276 REMARK 350 BIOMT1 49 0.861803 -0.425325 -0.276393 250.08642 REMARK 350 BIOMT2 49 0.425325 0.309017 0.850651 -173.21399 REMARK 350 BIOMT3 49 -0.276393 -0.850651 0.447214 500.17278 REMARK 350 BIOMT1 50 0.670820 0.162460 0.723607 -165.04395 REMARK 350 BIOMT2 50 -0.688191 0.500000 0.525731 198.30886 REMARK 350 BIOMT3 50 -0.276393 -0.850651 0.447214 500.17280 REMARK 350 BIOMT1 51 0.447214 -0.525731 -0.723607 536.38684 REMARK 350 BIOMT2 51 -0.850651 0.000000 -0.525731 707.92817 REMARK 350 BIOMT3 51 0.276393 0.850651 -0.447214 93.39221 REMARK 350 BIOMT1 52 0.947214 -0.162460 0.276393 -17.83633 REMARK 350 BIOMT2 52 0.162460 -0.500000 -0.850651 651.36738 REMARK 350 BIOMT3 52 0.276393 0.850651 -0.447214 93.39223 REMARK 350 BIOMT1 53 0.138197 0.425325 0.894427 -135.30819 REMARK 350 BIOMT2 53 0.951057 -0.309017 0.000000 106.79158 REMARK 350 BIOMT3 53 0.276393 0.850651 -0.447214 93.39224 REMARK 350 BIOMT1 54 -0.861803 0.425325 0.276393 346.31337 REMARK 350 BIOMT2 54 0.425325 0.309017 0.850651 -173.21399 REMARK 350 BIOMT3 54 0.276393 0.850651 -0.447214 93.39222 REMARK 350 BIOMT1 55 -0.670820 -0.162460 -0.723607 761.44373 REMARK 350 BIOMT2 55 -0.688191 0.500000 0.525731 198.30886 REMARK 350 BIOMT3 55 0.276393 0.850651 -0.447214 93.39220 REMARK 350 BIOMT1 56 -0.447214 -0.525731 0.723607 373.59723 REMARK 350 BIOMT2 56 0.850651 0.000000 0.525731 -111.45537 REMARK 350 BIOMT3 56 -0.276393 0.850651 0.447214 -7.21729 REMARK 350 BIOMT1 57 -0.670820 -0.688191 0.276393 621.45338 REMARK 350 BIOMT2 57 -0.162460 0.500000 0.850651 -54.89458 REMARK 350 BIOMT3 57 -0.723607 0.525731 -0.447214 488.49497 REMARK 350 BIOMT1 58 -0.309017 -0.951057 0.000000 673.98840 REMARK 350 BIOMT2 58 -0.951057 0.309017 0.000000 489.68122 REMARK 350 BIOMT3 58 0.000000 0.000000 -1.000000 593.56500 REMARK 350 BIOMT1 59 0.138197 -0.951057 0.276393 458.60068 REMARK 350 BIOMT2 59 -0.425325 -0.309017 -0.850651 769.68679 REMARK 350 BIOMT3 59 0.894427 0.000000 -0.447214 162.78959 REMARK 350 BIOMT1 60 0.052786 -0.688191 0.723607 272.94872 REMARK 350 BIOMT2 60 0.688191 -0.500000 -0.525731 398.16394 REMARK 350 BIOMT3 60 0.723607 0.525731 0.447214 -208.51429 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 93 REMARK 465 SER A 94 REMARK 465 PRO A 95 REMARK 465 SER A 96 REMARK 465 ASP A 97 REMARK 465 SER A 98 REMARK 465 GLY C 1 REMARK 465 VAL C 66 REMARK 465 ASP C 67 REMARK 465 PRO B 145 REMARK 465 ASP B 146 REMARK 465 GLY B 147 REMARK 465 LYS B 148 REMARK 465 ALA B 149 REMARK 465 LYS B 150 REMARK 465 SER B 151 REMARK 465 LEU B 152 REMARK 465 GLN B 153 REMARK 465 GLU B 154 REMARK 465 LEU B 155 REMARK 465 ASN B 156 REMARK 465 GLU B 157 REMARK 465 GLY D 1 REMARK 465 ASN D 2 REMARK 465 VAL D 3 REMARK 465 GLN D 4 REMARK 465 THR D 5 REMARK 465 THR D 6 REMARK 465 SER D 7 REMARK 465 LYS D 8 REMARK 465 ASN D 9 REMARK 465 ASP D 10 REMARK 465 PHE D 11 REMARK 465 ASP D 12 REMARK 465 SER D 13 REMARK 465 SER D 40 REMARK 465 SER D 41 REMARK 465 ALA D 42 REMARK 465 SER D 43 REMARK 465 GLY D 44 REMARK 465 ALA D 45 REMARK 465 GLY D 46 REMARK 465 PRO D 47 REMARK 465 GLY D 48 REMARK 465 ASN D 49 REMARK 465 SER D 50 REMARK 465 ARG D 51 REMARK 465 GLY D 52 REMARK 465 GLY D 53 REMARK 465 LEU D 54 REMARK 465 ALA D 55 REMARK 465 GLY D 56 REMARK 465 LEU D 57 REMARK 465 LEU D 58 REMARK 465 THR D 59 REMARK 465 ASN D 60 REMARK 465 PHE D 61 REMARK 465 SER D 62 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 36 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 LEU C 196 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 150 -167.68 -161.41 REMARK 500 CYS A 248 82.13 56.50 REMARK 500 ASN C 10 34.72 -98.57 REMARK 500 ASP C 81 51.25 -93.68 REMARK 500 ARG C 128 -169.65 -114.91 REMARK 500 SER C 189 -36.83 -130.49 REMARK 500 SER C 211 74.91 53.48 REMARK 500 LEU C 228 78.86 61.12 REMARK 500 TYR B 36 -13.61 71.73 REMARK 500 GLN B 81 118.61 -160.38 REMARK 500 GLU B 138 63.18 60.98 REMARK 500 GLN B 159 -13.22 71.51 REMARK 500 ASN B 192 39.89 -96.84 REMARK 500 ASP B 255 72.45 54.10 REMARK 500 SER B 266 73.03 50.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-9612 RELATED DB: EMDB REMARK 900 A PICORNAVIRUS AT ACIDIC CONDITION DBREF 6ADS A 1 258 PDB 6ADS 6ADS 1 258 DBREF 6ADS C 1 238 PDB 6ADS 6ADS 1 238 DBREF 6ADS B 12 278 PDB 6ADS 6ADS 12 278 DBREF 6ADS D 1 72 PDB 6ADS 6ADS 1 72 SEQRES 1 A 258 SER THR ASP ASN ALA GLU THR GLY VAL ILE GLU ALA GLY SEQRES 2 A 258 ASN THR ASP THR ASP PHE SER GLY GLU LEU ALA ALA PRO SEQRES 3 A 258 GLY SER ASN HIS THR ASN VAL LYS PHE LEU PHE ASP ARG SEQRES 4 A 258 SER ARG LEU LEU ASN VAL ILE LYS VAL LEU GLU LYS ASP SEQRES 5 A 258 ALA VAL PHE PRO ARG PRO PHE PRO THR ALA THR GLY THR SEQRES 6 A 258 GLN GLN ASP ASP GLY TYR PHE CYS LEU LEU THR PRO ARG SEQRES 7 A 258 PRO THR VAL ALA SER ARG PRO ALA THR ARG PHE GLY LEU SEQRES 8 A 258 TYR VAL SER PRO SER ASP SER GLY VAL LEU ALA ASN THR SEQRES 9 A 258 SER LEU ASP PHE ASN PHE TYR SER LEU ALA CYS PHE THR SEQRES 10 A 258 TYR PHE ARG SER ASP LEU GLU VAL THR VAL VAL SER LEU SEQRES 11 A 258 GLU PRO ASP LEU GLU PHE ALA VAL GLY TRP PHE PRO SER SEQRES 12 A 258 GLY SER GLU TYR GLN ALA SER SER PHE VAL TYR ASP GLN SEQRES 13 A 258 LEU HIS VAL PRO TYR HIS PHE THR GLY ARG THR PRO ARG SEQRES 14 A 258 ALA PHE ALA SER LYS GLY GLY LYS VAL SER PHE VAL LEU SEQRES 15 A 258 PRO TRP ASN SER VAL SER SER VAL LEU PRO VAL ARG TRP SEQRES 16 A 258 GLY GLY ALA SER LYS LEU SER SER ALA THR ARG GLY LEU SEQRES 17 A 258 PRO ALA HIS ALA ASP TRP GLY THR ILE TYR ALA PHE ILE SEQRES 18 A 258 PRO ARG PRO ASN GLU LYS LYS SER THR ALA VAL LYS HIS SEQRES 19 A 258 VAL ALA VAL TYR ILE ARG TYR LYS ASN ALA ARG ALA TRP SEQRES 20 A 258 CYS PRO SER MET LEU PRO PHE ARG SER TYR LYS SEQRES 1 C 231 GLY PRO ILE PRO THR ALA PRO ARG GLU ASN SER LEU MET SEQRES 2 C 231 PHE LEU SER THR THR PRO ASP ASP THR VAL PRO ALA TYR SEQRES 3 C 231 GLY ASN VAL ARG THR PRO PRO VAL ASN TYR LEU PRO GLY SEQRES 4 C 231 GLU ILE THR ASP LEU LEU GLN LEU ALA ARG ILE PRO THR SEQRES 5 C 231 LEU MET ALA PHE GLY ARG VAL ASP ALA TYR VAL PRO TYR SEQRES 6 C 231 VAL ALA VAL PRO THR GLN PHE ASP ASP LYS PRO LEU ILE SEQRES 7 C 231 SER PHE PRO ILE THR LEU SER ASP PRO VAL TYR GLN ASN SEQRES 8 C 231 THR LEU VAL GLY ALA ILE SER SER ASN PHE ALA ASN TYR SEQRES 9 C 231 ARG GLY CYS ILE GLN ILE THR LEU THR PHE CYS GLY PRO SEQRES 10 C 231 MET MET ALA ARG GLY LYS PHE LEU LEU SER TYR SER PRO SEQRES 11 C 231 PRO ASN GLY THR GLN PRO GLN THR LEU SER GLU ALA MET SEQRES 12 C 231 GLN CYS THR TYR SER ILE TRP ASP ILE GLY LEU ASN SER SEQRES 13 C 231 SER TRP THR PHE VAL ILE PRO TYR ILE SER PRO SER ASP SEQRES 14 C 231 TYR ARG GLU THR ARG ALA ILE THR ASN SER VAL TYR SER SEQRES 15 C 231 ALA ASP GLY TRP PHE SER LEU HIS LYS LEU THR LYS ILE SEQRES 16 C 231 THR LEU PRO PRO ASP CYS PRO GLN SER PRO CYS ILE LEU SEQRES 17 C 231 PHE PHE ALA SER ALA GLY GLU ASP TYR THR LEU ARG LEU SEQRES 18 C 231 PRO VAL ASP CYS ASN PRO SER TYR VAL PHE SEQRES 1 B 267 ASP ARG VAL THR THR GLN THR ALA GLY ASN THR ALA ILE SEQRES 2 B 267 ASN THR GLN SER SER LEU GLY VAL LEU CYS ALA TYR VAL SEQRES 3 B 267 GLU ASP PRO THR LYS SER ASP PRO PRO SER SER SER THR SEQRES 4 B 267 ASP GLN PRO THR THR THR PHE THR ALA ILE ASP ARG TRP SEQRES 5 B 267 TYR THR GLY ARG LEU ASN SER TRP THR LYS ALA VAL LYS SEQRES 6 B 267 THR PHE SER PHE GLN ALA VAL PRO LEU PRO GLY ALA PHE SEQRES 7 B 267 LEU SER ARG GLN GLY GLY LEU ASN GLY GLY ALA PHE THR SEQRES 8 B 267 ALA THR LEU HIS ARG HIS PHE LEU MET LYS CYS GLY TRP SEQRES 9 B 267 GLN VAL GLN VAL GLN CYS ASN LEU THR GLN PHE HIS GLN SEQRES 10 B 267 GLY ALA LEU LEU VAL ALA MET VAL PRO GLU THR THR LEU SEQRES 11 B 267 ASP VAL LYS PRO ASP GLY LYS ALA LYS SER LEU GLN GLU SEQRES 12 B 267 LEU ASN GLU GLU GLN TRP VAL GLU MET SER ASP ASP TYR SEQRES 13 B 267 ARG THR GLY LYS ASN MET PRO PHE GLN SER LEU GLY THR SEQRES 14 B 267 TYR TYR ARG PRO PRO ASN TRP THR TRP GLY PRO ASN PHE SEQRES 15 B 267 ILE ASN PRO TYR GLN VAL THR VAL PHE PRO HIS GLN ILE SEQRES 16 B 267 LEU ASN ALA ARG THR SER THR SER VAL ASP ILE ASN VAL SEQRES 17 B 267 PRO TYR ILE GLY GLU THR PRO THR GLN SER SER GLU THR SEQRES 18 B 267 GLN ASN SER TRP THR LEU LEU VAL MET VAL LEU VAL PRO SEQRES 19 B 267 LEU ASP TYR LYS GLU GLY ALA THR THR ASP PRO GLU ILE SEQRES 20 B 267 THR PHE SER VAL ARG PRO THR SER PRO TYR PHE ASN GLY SEQRES 21 B 267 LEU ARG ASN ARG TYR THR THR SEQRES 1 D 71 GLY ASN VAL GLN THR THR SER LYS ASN ASP PHE ASP SER SEQRES 2 D 71 ARG GLY ASN ASN GLY ASN MET THR PHE ASN TYR TYR ALA SEQRES 3 D 71 ASN THR TYR GLN ASN SER VAL ASP PHE SER THR SER SER SEQRES 4 D 71 SER ALA SER GLY ALA GLY PRO GLY ASN SER ARG GLY GLY SEQRES 5 D 71 LEU ALA GLY LEU LEU THR ASN PHE SER GLY ILE LEU ASN SEQRES 6 D 71 PRO LEU GLY TYR LEU LYS HELIX 1 AA1 ASN A 4 GLY A 8 5 5 HELIX 2 AA2 ASN A 32 PHE A 37 1 6 HELIX 3 AA3 ASP A 107 SER A 112 1 6 HELIX 4 AA4 HIS A 162 THR A 164 5 3 HELIX 5 AA5 PRO A 224 LYS A 228 5 5 HELIX 6 AA6 LEU C 44 ARG C 49 1 6 HELIX 7 AA7 THR C 99 SER C 105 1 7 HELIX 8 AA8 SER C 106 PHE C 108 5 3 HELIX 9 AA9 THR C 145 GLN C 151 1 7 HELIX 10 AB1 ASN C 233 PHE C 238 5 6 HELIX 11 AB2 PRO B 86 SER B 91 1 6 HELIX 12 AB3 GLY B 99 HIS B 106 1 8 HELIX 13 AB4 SER B 164 GLY B 170 1 7 HELIX 14 AB5 GLN B 198 PHE B 202 5 5 HELIX 15 AB6 ALA D 26 ASN D 31 1 6 SHEET 1 AA1 5 THR A 2 ASP A 3 0 SHEET 2 AA1 5 SER C 164 VAL C 168 -1 O SER C 164 N ASP A 3 SHEET 3 AA1 5 ILE C 115 PHE C 121 -1 N ILE C 117 O PHE C 167 SHEET 4 AA1 5 CYS C 213 ALA C 220 -1 O SER C 219 N GLN C 116 SHEET 5 AA1 5 THR C 52 LEU C 53 -1 N THR C 52 O ALA C 218 SHEET 1 AA2 5 THR A 2 ASP A 3 0 SHEET 2 AA2 5 SER C 164 VAL C 168 -1 O SER C 164 N ASP A 3 SHEET 3 AA2 5 ILE C 115 PHE C 121 -1 N ILE C 117 O PHE C 167 SHEET 4 AA2 5 CYS C 213 ALA C 220 -1 O SER C 219 N GLN C 116 SHEET 5 AA2 5 TYR C 72 ALA C 74 -1 N VAL C 73 O ILE C 214 SHEET 1 AA3 6 PHE A 72 LEU A 74 0 SHEET 2 AA3 6 THR A 216 PHE A 220 -1 O ILE A 217 N CYS A 73 SHEET 3 AA3 6 ARG A 41 LEU A 49 1 N LEU A 49 O ALA A 219 SHEET 4 AA3 6 HIS A 234 PRO A 249 -1 O VAL A 237 N LEU A 43 SHEET 5 AA3 6 PHE A 116 SER A 129 -1 N THR A 126 O TYR A 238 SHEET 6 AA3 6 LEU A 191 PRO A 192 -1 O LEU A 191 N PHE A 119 SHEET 1 AA4 4 ARG A 169 PHE A 171 0 SHEET 2 AA4 4 ALA A 137 PHE A 141 -1 N VAL A 138 O ALA A 170 SHEET 3 AA4 4 THR A 216 PHE A 220 -1 O PHE A 220 N ALA A 137 SHEET 4 AA4 4 PHE A 72 LEU A 74 -1 N CYS A 73 O ILE A 217 SHEET 1 AA5 4 VAL A 178 LEU A 182 0 SHEET 2 AA5 4 PHE A 116 SER A 129 -1 N LEU A 123 O LEU A 182 SHEET 3 AA5 4 HIS A 234 PRO A 249 -1 O TYR A 238 N THR A 126 SHEET 4 AA5 4 GLU C 40 ILE C 41 -1 O ILE C 41 N ALA A 246 SHEET 1 AA6 3 ARG A 84 PRO A 85 0 SHEET 2 AA6 3 THR A 80 VAL A 81 -1 N VAL A 81 O ARG A 84 SHEET 3 AA6 3 THR A 104 SER A 105 -1 O SER A 105 N THR A 80 SHEET 1 AA7 2 PHE A 89 LEU A 91 0 SHEET 2 AA7 2 ASN B 186 TRP B 189 -1 O TRP B 189 N PHE A 89 SHEET 1 AA8 2 SER A 151 VAL A 153 0 SHEET 2 AA8 2 HIS A 158 PRO A 160 -1 O VAL A 159 N PHE A 152 SHEET 1 AA9 4 ILE C 85 PRO C 88 0 SHEET 2 AA9 4 TRP C 193 THR C 200 -1 O LEU C 196 N ILE C 85 SHEET 3 AA9 4 LYS C 130 SER C 136 -1 N SER C 136 O TRP C 193 SHEET 4 AA9 4 THR C 153 ASP C 158 -1 O SER C 155 N LEU C 133 SHEET 1 AB1 3 ARG C 178 GLU C 179 0 SHEET 2 AB1 3 ASN C 110 ARG C 112 -1 N TYR C 111 O ARG C 178 SHEET 3 AB1 3 THR C 225 ARG C 227 -1 O THR C 225 N ARG C 112 SHEET 1 AB2 2 THR B 15 ALA B 19 0 SHEET 2 AB2 2 THR B 22 THR B 26 -1 O THR B 22 N ALA B 19 SHEET 1 AB3 6 TYR B 64 ARG B 67 0 SHEET 2 AB3 6 THR B 259 THR B 265 -1 O VAL B 262 N TYR B 64 SHEET 3 AB3 6 GLY B 114 GLN B 120 -1 N GLN B 118 O SER B 261 SHEET 4 AB3 6 SER B 214 VAL B 219 -1 O ILE B 217 N VAL B 117 SHEET 5 AB3 6 VAL B 32 ALA B 35 1 N ALA B 35 O ASN B 218 SHEET 6 AB3 6 GLY D 69 LYS D 72 -1 O LYS D 72 N VAL B 32 SHEET 1 AB4 4 PHE B 80 LEU B 85 0 SHEET 2 AB4 4 TRP B 236 ASP B 247 -1 O LEU B 238 N VAL B 83 SHEET 3 AB4 4 GLN B 128 VAL B 136 -1 N ALA B 134 O LEU B 239 SHEET 4 AB4 4 HIS B 204 ASN B 208 -1 O LEU B 207 N LEU B 131 SHEET 1 AB5 3 GLN B 228 SER B 229 0 SHEET 2 AB5 3 HIS B 108 MET B 111 -1 N MET B 111 O GLN B 228 SHEET 3 AB5 3 ASN B 270 LEU B 272 -1 O ASN B 270 N LEU B 110 CISPEP 1 PHE A 59 PRO A 60 0 -3.51 CISPEP 2 LEU B 85 PRO B 86 0 2.45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.001955 0.000000 0.000000 0.00000 SCALE2 0.000000 0.001955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001955 0.00000