HEADER OXIDOREDUCTASE 17-AUG-18 6AHE TITLE CRYSTAL STRUCTURE OF ENOYL-ACP REDUCTASE FROM ACINETOBACTER BAUMANNII TITLE 2 IN COMPLEX WITH NAD AND AFN-1252 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]; COMPND 3 CHAIN: A, D, C, B; COMPND 4 EC: 1.3.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII ATCC 19606 = CIP 70.34 SOURCE 3 = JCM 6841; SOURCE 4 ORGANISM_COMMON: ACINETOBACTER BAUMANNII ATCC 19606; SOURCE 5 ORGANISM_TAXID: 575584; SOURCE 6 STRAIN: ATCC 19606 / AUCC 669; SOURCE 7 ATCC: ATCC 19606; SOURCE 8 GENE: NC_009085.1; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_CELL: DE3; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET 28A-ABFABI PLASMID KEYWDS FABI, ACINETOBACTER BAUMANNII, NAD, AFN-1252, INHIBITOR COMPLEX, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.T.RANI,V.NATARAJ,A.LAXMINARASIMHAN,A.THOMAS,N.KRISHNAMURTHY REVDAT 3 22-NOV-23 6AHE 1 REMARK REVDAT 2 02-SEP-20 6AHE 1 JRNL REVDAT 1 21-AUG-19 6AHE 0 JRNL AUTH N.K.RAO,V.NATARAJ,M.RAVI,L.PANCHARIYA,K.PALAI,S.R.TALAPATI, JRNL AUTH 2 A.LAKSHMINARASIMHAN,M.RAMACHANDRA,T.ANTONY JRNL TITL TERNARY COMPLEX FORMATION OF AFN-1252 WITH ACINETOBACTER JRNL TITL 2 BAUMANNII FABI AND NADH: CRYSTALLOGRAPHIC AND BIOCHEMICAL JRNL TITL 3 STUDIES. JRNL REF CHEM.BIOL.DRUG DES. V. 96 704 2020 JRNL REFN ESSN 1747-0285 JRNL PMID 32227402 JRNL DOI 10.1111/CBDD.13686 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 49249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2527 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3393 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.3340 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7768 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 288 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.345 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.257 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.247 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.723 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8225 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11177 ; 1.861 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1036 ; 7.073 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 328 ;41.021 ;23.780 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1265 ;17.528 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;20.483 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1248 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6220 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4156 ; 4.359 ; 5.524 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5188 ; 6.201 ; 8.264 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4069 ; 5.396 ; 5.873 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 13132 ;12.098 ;77.726 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 6AHE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1300008780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51845 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 87.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.35700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4ZJU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.5, 100MM NACL, 5% REMARK 280 PEG3350, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.76450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.73650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.78650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.73650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.76450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.78650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 MET A 263 REMARK 465 MET A 264 REMARK 465 ASP A 265 REMARK 465 ASP A 266 REMARK 465 GLU A 267 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 MET D 263 REMARK 465 MET D 264 REMARK 465 ASP D 265 REMARK 465 ASP D 266 REMARK 465 GLU D 267 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 MET C 263 REMARK 465 MET C 264 REMARK 465 ASP C 265 REMARK 465 ASP C 266 REMARK 465 GLU C 267 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 MET B 263 REMARK 465 MET B 264 REMARK 465 ASP B 265 REMARK 465 ASP B 266 REMARK 465 GLU B 267 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 LYS A 204 CG CD CE NZ REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 SER A 262 OG REMARK 470 GLN D 3 CG CD OE1 NE2 REMARK 470 LYS D 204 CG CD CE NZ REMARK 470 LYS D 208 CG CD CE NZ REMARK 470 SER D 262 OG REMARK 470 GLN C 3 CG CD OE1 NE2 REMARK 470 LYS C 208 CG CD CE NZ REMARK 470 SER C 262 OG REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 470 LYS B 204 CG CD CE NZ REMARK 470 LYS B 208 CG CD CE NZ REMARK 470 SER B 262 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 157 N - CA - C ANGL. DEV. = 17.7 DEGREES REMARK 500 ASN C 158 N - CA - CB ANGL. DEV. = -16.3 DEGREES REMARK 500 ARG B 221 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 45 -35.30 -38.72 REMARK 500 PHE A 96 142.47 -170.99 REMARK 500 ALA A 123 -51.59 -123.26 REMARK 500 ASN A 160 -121.20 43.68 REMARK 500 PRO A 218 -38.54 -37.72 REMARK 500 ALA A 252 29.80 49.46 REMARK 500 LEU D 6 41.48 -104.66 REMARK 500 ALA D 17 -42.50 -130.56 REMARK 500 ALA D 123 -60.21 -121.91 REMARK 500 ASN D 160 -125.49 41.26 REMARK 500 ASP D 251 21.22 -149.91 REMARK 500 ALA D 252 19.60 59.37 REMARK 500 SER C 21 154.74 -49.10 REMARK 500 ASN C 160 -123.74 48.65 REMARK 500 ASP C 251 17.86 -145.52 REMARK 500 GLN C 261 131.44 -33.91 REMARK 500 CYS B 65 90.96 -160.12 REMARK 500 SER B 93 67.31 -118.79 REMARK 500 ASN B 158 -13.18 64.00 REMARK 500 ASN B 160 -115.75 43.94 REMARK 500 VAL B 250 78.72 -119.52 REMARK 500 GLN B 261 116.16 -39.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 261 SER A 262 -135.62 REMARK 500 GLN D 261 SER D 262 -142.57 REMARK 500 GLN C 261 SER C 262 -146.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD D 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD C 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 300 DBREF1 6AHE A 1 267 UNP A0A2J1CZK4_ACIB2 DBREF2 6AHE A A0A2J1CZK4 1 267 DBREF1 6AHE D 1 267 UNP A0A2J1CZK4_ACIB2 DBREF2 6AHE D A0A2J1CZK4 1 267 DBREF1 6AHE C 1 267 UNP A0A2J1CZK4_ACIB2 DBREF2 6AHE C A0A2J1CZK4 1 267 DBREF1 6AHE B 1 267 UNP A0A2J1CZK4_ACIB2 DBREF2 6AHE B A0A2J1CZK4 1 267 SEQRES 1 A 267 MET THR GLN GLY LEU LEU ALA GLY LYS ARG PHE LEU ILE SEQRES 2 A 267 ALA GLY VAL ALA SER LYS LEU SER ILE ALA TYR GLY ILE SEQRES 3 A 267 ALA GLN ALA LEU HIS ARG GLU GLY ALA GLU LEU ALA PHE SEQRES 4 A 267 THR TYR PRO ASN GLU LYS LEU LYS LYS ARG VAL ASP GLU SEQRES 5 A 267 PHE ALA GLU GLN PHE GLY SER LYS LEU VAL PHE PRO CYS SEQRES 6 A 267 ASP VAL ALA VAL ASP ALA GLU ILE ASP ASN ALA PHE ALA SEQRES 7 A 267 GLU LEU ALA LYS HIS TRP ASP GLY VAL ASP GLY VAL VAL SEQRES 8 A 267 HIS SER ILE GLY PHE ALA PRO ALA HIS THR LEU ASP GLY SEQRES 9 A 267 ASP PHE THR ASP VAL THR ASP ARG ASP GLY PHE LYS ILE SEQRES 10 A 267 ALA HIS ASP ILE SER ALA TYR SER PHE VAL ALA MET ALA SEQRES 11 A 267 ARG ALA ALA LYS PRO LEU LEU GLN ALA ARG GLN GLY CYS SEQRES 12 A 267 LEU LEU THR LEU THR TYR GLN GLY SER GLU ARG VAL MET SEQRES 13 A 267 PRO ASN TYR ASN VAL MET GLY MET ALA LYS ALA SER LEU SEQRES 14 A 267 GLU ALA GLY VAL ARG TYR LEU ALA SER SER LEU GLY VAL SEQRES 15 A 267 ASP GLY ILE ARG VAL ASN ALA ILE SER ALA GLY PRO ILE SEQRES 16 A 267 ARG THR LEU ALA ALA SER GLY ILE LYS SER PHE ARG LYS SEQRES 17 A 267 MET LEU ASP ALA ASN GLU LYS VAL ALA PRO LEU LYS ARG SEQRES 18 A 267 ASN VAL THR ILE GLU GLU VAL GLY ASN ALA ALA LEU PHE SEQRES 19 A 267 LEU CYS SER PRO TRP ALA SER GLY ILE THR GLY GLU ILE SEQRES 20 A 267 LEU TYR VAL ASP ALA GLY PHE ASN THR VAL GLY MET SER SEQRES 21 A 267 GLN SER MET MET ASP ASP GLU SEQRES 1 D 267 MET THR GLN GLY LEU LEU ALA GLY LYS ARG PHE LEU ILE SEQRES 2 D 267 ALA GLY VAL ALA SER LYS LEU SER ILE ALA TYR GLY ILE SEQRES 3 D 267 ALA GLN ALA LEU HIS ARG GLU GLY ALA GLU LEU ALA PHE SEQRES 4 D 267 THR TYR PRO ASN GLU LYS LEU LYS LYS ARG VAL ASP GLU SEQRES 5 D 267 PHE ALA GLU GLN PHE GLY SER LYS LEU VAL PHE PRO CYS SEQRES 6 D 267 ASP VAL ALA VAL ASP ALA GLU ILE ASP ASN ALA PHE ALA SEQRES 7 D 267 GLU LEU ALA LYS HIS TRP ASP GLY VAL ASP GLY VAL VAL SEQRES 8 D 267 HIS SER ILE GLY PHE ALA PRO ALA HIS THR LEU ASP GLY SEQRES 9 D 267 ASP PHE THR ASP VAL THR ASP ARG ASP GLY PHE LYS ILE SEQRES 10 D 267 ALA HIS ASP ILE SER ALA TYR SER PHE VAL ALA MET ALA SEQRES 11 D 267 ARG ALA ALA LYS PRO LEU LEU GLN ALA ARG GLN GLY CYS SEQRES 12 D 267 LEU LEU THR LEU THR TYR GLN GLY SER GLU ARG VAL MET SEQRES 13 D 267 PRO ASN TYR ASN VAL MET GLY MET ALA LYS ALA SER LEU SEQRES 14 D 267 GLU ALA GLY VAL ARG TYR LEU ALA SER SER LEU GLY VAL SEQRES 15 D 267 ASP GLY ILE ARG VAL ASN ALA ILE SER ALA GLY PRO ILE SEQRES 16 D 267 ARG THR LEU ALA ALA SER GLY ILE LYS SER PHE ARG LYS SEQRES 17 D 267 MET LEU ASP ALA ASN GLU LYS VAL ALA PRO LEU LYS ARG SEQRES 18 D 267 ASN VAL THR ILE GLU GLU VAL GLY ASN ALA ALA LEU PHE SEQRES 19 D 267 LEU CYS SER PRO TRP ALA SER GLY ILE THR GLY GLU ILE SEQRES 20 D 267 LEU TYR VAL ASP ALA GLY PHE ASN THR VAL GLY MET SER SEQRES 21 D 267 GLN SER MET MET ASP ASP GLU SEQRES 1 C 267 MET THR GLN GLY LEU LEU ALA GLY LYS ARG PHE LEU ILE SEQRES 2 C 267 ALA GLY VAL ALA SER LYS LEU SER ILE ALA TYR GLY ILE SEQRES 3 C 267 ALA GLN ALA LEU HIS ARG GLU GLY ALA GLU LEU ALA PHE SEQRES 4 C 267 THR TYR PRO ASN GLU LYS LEU LYS LYS ARG VAL ASP GLU SEQRES 5 C 267 PHE ALA GLU GLN PHE GLY SER LYS LEU VAL PHE PRO CYS SEQRES 6 C 267 ASP VAL ALA VAL ASP ALA GLU ILE ASP ASN ALA PHE ALA SEQRES 7 C 267 GLU LEU ALA LYS HIS TRP ASP GLY VAL ASP GLY VAL VAL SEQRES 8 C 267 HIS SER ILE GLY PHE ALA PRO ALA HIS THR LEU ASP GLY SEQRES 9 C 267 ASP PHE THR ASP VAL THR ASP ARG ASP GLY PHE LYS ILE SEQRES 10 C 267 ALA HIS ASP ILE SER ALA TYR SER PHE VAL ALA MET ALA SEQRES 11 C 267 ARG ALA ALA LYS PRO LEU LEU GLN ALA ARG GLN GLY CYS SEQRES 12 C 267 LEU LEU THR LEU THR TYR GLN GLY SER GLU ARG VAL MET SEQRES 13 C 267 PRO ASN TYR ASN VAL MET GLY MET ALA LYS ALA SER LEU SEQRES 14 C 267 GLU ALA GLY VAL ARG TYR LEU ALA SER SER LEU GLY VAL SEQRES 15 C 267 ASP GLY ILE ARG VAL ASN ALA ILE SER ALA GLY PRO ILE SEQRES 16 C 267 ARG THR LEU ALA ALA SER GLY ILE LYS SER PHE ARG LYS SEQRES 17 C 267 MET LEU ASP ALA ASN GLU LYS VAL ALA PRO LEU LYS ARG SEQRES 18 C 267 ASN VAL THR ILE GLU GLU VAL GLY ASN ALA ALA LEU PHE SEQRES 19 C 267 LEU CYS SER PRO TRP ALA SER GLY ILE THR GLY GLU ILE SEQRES 20 C 267 LEU TYR VAL ASP ALA GLY PHE ASN THR VAL GLY MET SER SEQRES 21 C 267 GLN SER MET MET ASP ASP GLU SEQRES 1 B 267 MET THR GLN GLY LEU LEU ALA GLY LYS ARG PHE LEU ILE SEQRES 2 B 267 ALA GLY VAL ALA SER LYS LEU SER ILE ALA TYR GLY ILE SEQRES 3 B 267 ALA GLN ALA LEU HIS ARG GLU GLY ALA GLU LEU ALA PHE SEQRES 4 B 267 THR TYR PRO ASN GLU LYS LEU LYS LYS ARG VAL ASP GLU SEQRES 5 B 267 PHE ALA GLU GLN PHE GLY SER LYS LEU VAL PHE PRO CYS SEQRES 6 B 267 ASP VAL ALA VAL ASP ALA GLU ILE ASP ASN ALA PHE ALA SEQRES 7 B 267 GLU LEU ALA LYS HIS TRP ASP GLY VAL ASP GLY VAL VAL SEQRES 8 B 267 HIS SER ILE GLY PHE ALA PRO ALA HIS THR LEU ASP GLY SEQRES 9 B 267 ASP PHE THR ASP VAL THR ASP ARG ASP GLY PHE LYS ILE SEQRES 10 B 267 ALA HIS ASP ILE SER ALA TYR SER PHE VAL ALA MET ALA SEQRES 11 B 267 ARG ALA ALA LYS PRO LEU LEU GLN ALA ARG GLN GLY CYS SEQRES 12 B 267 LEU LEU THR LEU THR TYR GLN GLY SER GLU ARG VAL MET SEQRES 13 B 267 PRO ASN TYR ASN VAL MET GLY MET ALA LYS ALA SER LEU SEQRES 14 B 267 GLU ALA GLY VAL ARG TYR LEU ALA SER SER LEU GLY VAL SEQRES 15 B 267 ASP GLY ILE ARG VAL ASN ALA ILE SER ALA GLY PRO ILE SEQRES 16 B 267 ARG THR LEU ALA ALA SER GLY ILE LYS SER PHE ARG LYS SEQRES 17 B 267 MET LEU ASP ALA ASN GLU LYS VAL ALA PRO LEU LYS ARG SEQRES 18 B 267 ASN VAL THR ILE GLU GLU VAL GLY ASN ALA ALA LEU PHE SEQRES 19 B 267 LEU CYS SER PRO TRP ALA SER GLY ILE THR GLY GLU ILE SEQRES 20 B 267 LEU TYR VAL ASP ALA GLY PHE ASN THR VAL GLY MET SER SEQRES 21 B 267 GLN SER MET MET ASP ASP GLU MODRES 6AHE 0WE A 301 LIG 5 MODRES 6AHE 0WE D 301 LIG 6 MODRES 6AHE 0WE C 301 LIG 7 MODRES 6AHE 0WE B 301 LIG 8 HET NAD A 300 44 HET 0WE A 301 28 HET NAD D 300 44 HET 0WE D 301 28 HET NAD C 300 44 HET 0WE C 301 28 HET NAD B 300 44 HET 0WE B 301 28 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 0WE N-METHYL-N-[(3-METHYL-1-BENZOFURAN-2-YL)METHYL]-3-(7- HETNAM 2 0WE OXO-5,6,7,8-TETRAHYDRO-1,8-NAPHTHYRIDIN-3-YL) HETNAM 3 0WE PROPANAMIDE FORMUL 5 NAD 4(C21 H27 N7 O14 P2) FORMUL 6 0WE 4(C22 H23 N3 O3) FORMUL 13 HOH *155(H2 O) HELIX 1 AA1 SER A 21 GLU A 33 1 13 HELIX 2 AA2 ASN A 43 GLN A 56 1 14 HELIX 3 AA3 VAL A 69 TRP A 84 1 16 HELIX 4 AA4 PRO A 98 ASP A 103 5 6 HELIX 5 AA5 ASP A 105 THR A 110 1 6 HELIX 6 AA6 ASP A 111 ALA A 123 1 13 HELIX 7 AA7 ALA A 123 GLN A 141 1 19 HELIX 8 AA8 TYR A 149 GLU A 153 5 5 HELIX 9 AA9 ASN A 160 GLY A 181 1 22 HELIX 10 AB1 SER A 205 ALA A 217 1 13 HELIX 11 AB2 THR A 224 CYS A 236 1 13 HELIX 12 AB3 SER A 237 SER A 241 5 5 HELIX 13 AB4 GLY A 253 VAL A 257 5 5 HELIX 14 AB5 SER D 21 GLU D 33 1 13 HELIX 15 AB6 ASN D 43 PHE D 57 1 15 HELIX 16 AB7 VAL D 69 TRP D 84 1 16 HELIX 17 AB8 ASP D 105 THR D 110 1 6 HELIX 18 AB9 ASP D 111 ALA D 123 1 13 HELIX 19 AC1 ALA D 123 GLN D 141 1 19 HELIX 20 AC2 TYR D 149 GLU D 153 5 5 HELIX 21 AC3 TYR D 159 GLY D 181 1 23 HELIX 22 AC4 VAL D 182 GLY D 184 5 3 HELIX 23 AC5 THR D 197 SER D 201 5 5 HELIX 24 AC6 SER D 205 ALA D 217 1 13 HELIX 25 AC7 THR D 224 CYS D 236 1 13 HELIX 26 AC8 SER D 237 SER D 241 5 5 HELIX 27 AC9 GLY D 253 VAL D 257 5 5 HELIX 28 AD1 SER C 21 GLU C 33 1 13 HELIX 29 AD2 ASN C 43 LYS C 45 5 3 HELIX 30 AD3 LEU C 46 PHE C 57 1 12 HELIX 31 AD4 VAL C 69 LYS C 82 1 14 HELIX 32 AD5 PRO C 98 ASP C 103 5 6 HELIX 33 AD6 ASP C 105 THR C 110 1 6 HELIX 34 AD7 ASP C 111 ALA C 123 1 13 HELIX 35 AD8 ALA C 123 ALA C 139 1 17 HELIX 36 AD9 TYR C 149 GLU C 153 5 5 HELIX 37 AE1 ASN C 160 GLY C 181 1 22 HELIX 38 AE2 THR C 197 SER C 201 5 5 HELIX 39 AE3 SER C 205 ALA C 217 1 13 HELIX 40 AE4 THR C 224 CYS C 236 1 13 HELIX 41 AE5 SER C 237 SER C 241 5 5 HELIX 42 AE6 GLY C 253 VAL C 257 5 5 HELIX 43 AE7 SER B 21 GLU B 33 1 13 HELIX 44 AE8 ASN B 43 PHE B 57 1 15 HELIX 45 AE9 VAL B 69 TRP B 84 1 16 HELIX 46 AF1 PRO B 98 ASP B 103 5 6 HELIX 47 AF2 ASP B 105 THR B 110 1 6 HELIX 48 AF3 ASP B 111 ALA B 123 1 13 HELIX 49 AF4 ALA B 123 GLN B 141 1 19 HELIX 50 AF5 TYR B 149 GLU B 153 5 5 HELIX 51 AF6 ASN B 160 GLY B 181 1 22 HELIX 52 AF7 VAL B 182 GLY B 184 5 3 HELIX 53 AF8 THR B 197 SER B 201 5 5 HELIX 54 AF9 SER B 205 ALA B 217 1 13 HELIX 55 AG1 THR B 224 CYS B 236 1 13 HELIX 56 AG2 SER B 237 SER B 241 5 5 HELIX 57 AG3 GLY B 253 VAL B 257 5 5 SHEET 1 AA1 7 VAL A 62 PRO A 64 0 SHEET 2 AA1 7 GLU A 36 TYR A 41 1 N PHE A 39 O PHE A 63 SHEET 3 AA1 7 ARG A 10 ALA A 14 1 N ILE A 13 O ALA A 38 SHEET 4 AA1 7 GLY A 89 HIS A 92 1 O VAL A 91 N ALA A 14 SHEET 5 AA1 7 CYS A 143 THR A 148 1 O LEU A 145 N HIS A 92 SHEET 6 AA1 7 ARG A 186 ALA A 192 1 O ILE A 190 N THR A 148 SHEET 7 AA1 7 ILE A 247 VAL A 250 1 O LEU A 248 N ALA A 189 SHEET 1 AA2 7 VAL D 62 PRO D 64 0 SHEET 2 AA2 7 GLU D 36 TYR D 41 1 N PHE D 39 O PHE D 63 SHEET 3 AA2 7 ARG D 10 ALA D 14 1 N PHE D 11 O GLU D 36 SHEET 4 AA2 7 GLY D 89 HIS D 92 1 O VAL D 91 N LEU D 12 SHEET 5 AA2 7 CYS D 143 THR D 148 1 O LEU D 145 N HIS D 92 SHEET 6 AA2 7 VAL D 187 ALA D 192 1 O ILE D 190 N THR D 148 SHEET 7 AA2 7 ILE D 247 VAL D 250 1 O LEU D 248 N SER D 191 SHEET 1 AA3 7 VAL C 62 PRO C 64 0 SHEET 2 AA3 7 GLU C 36 TYR C 41 1 N PHE C 39 O PHE C 63 SHEET 3 AA3 7 ARG C 10 ALA C 14 1 N ILE C 13 O ALA C 38 SHEET 4 AA3 7 GLY C 89 HIS C 92 1 O VAL C 91 N ALA C 14 SHEET 5 AA3 7 CYS C 143 THR C 148 1 O LEU C 145 N HIS C 92 SHEET 6 AA3 7 VAL C 187 ALA C 192 1 O ILE C 190 N THR C 148 SHEET 7 AA3 7 ILE C 247 VAL C 250 1 O LEU C 248 N SER C 191 SHEET 1 AA4 7 VAL B 62 PRO B 64 0 SHEET 2 AA4 7 GLU B 36 TYR B 41 1 N PHE B 39 O PHE B 63 SHEET 3 AA4 7 ARG B 10 ALA B 14 1 N ILE B 13 O ALA B 38 SHEET 4 AA4 7 GLY B 89 HIS B 92 1 O VAL B 91 N ALA B 14 SHEET 5 AA4 7 CYS B 143 THR B 148 1 O LEU B 145 N HIS B 92 SHEET 6 AA4 7 VAL B 187 ALA B 192 1 O ILE B 190 N THR B 148 SHEET 7 AA4 7 ILE B 247 VAL B 250 1 O VAL B 250 N SER B 191 SITE 1 AC1 23 GLY A 15 ALA A 17 SER A 21 ILE A 22 SITE 2 AC1 23 PRO A 42 CYS A 65 ASP A 66 VAL A 67 SITE 3 AC1 23 SER A 93 ILE A 94 GLY A 95 ILE A 121 SITE 4 AC1 23 LEU A 147 THR A 148 LYS A 166 ALA A 192 SITE 5 AC1 23 GLY A 193 PRO A 194 ILE A 195 THR A 197 SITE 6 AC1 23 ALA A 199 0WE A 301 HOH A 407 SITE 1 AC2 24 GLY D 15 VAL D 16 ALA D 17 SER D 21 SITE 2 AC2 24 ILE D 22 PRO D 42 CYS D 65 ASP D 66 SITE 3 AC2 24 VAL D 67 SER D 93 ILE D 94 GLY D 95 SITE 4 AC2 24 LEU D 147 THR D 148 LYS D 166 ALA D 192 SITE 5 AC2 24 GLY D 193 PRO D 194 ILE D 195 THR D 197 SITE 6 AC2 24 LEU D 198 ALA D 199 0WE D 301 HOH D 406 SITE 1 AC3 24 GLY C 15 ALA C 17 SER C 21 ILE C 22 SITE 2 AC3 24 PRO C 42 CYS C 65 ASP C 66 VAL C 67 SITE 3 AC3 24 SER C 93 ILE C 94 GLY C 95 ILE C 121 SITE 4 AC3 24 LEU C 147 THR C 148 LYS C 166 ALA C 192 SITE 5 AC3 24 GLY C 193 PRO C 194 ILE C 195 THR C 197 SITE 6 AC3 24 LEU C 198 ALA C 199 0WE C 301 HOH C 402 SITE 1 AC4 23 GLY B 15 VAL B 16 ALA B 17 SER B 21 SITE 2 AC4 23 ILE B 22 PRO B 42 CYS B 65 ASP B 66 SITE 3 AC4 23 VAL B 67 SER B 93 ILE B 94 GLY B 95 SITE 4 AC4 23 ILE B 121 LEU B 147 THR B 148 LYS B 166 SITE 5 AC4 23 ALA B 192 GLY B 193 PRO B 194 ILE B 195 SITE 6 AC4 23 THR B 197 ALA B 199 0WE B 301 CRYST1 79.529 89.573 159.473 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012574 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011164 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006271 0.00000