HEADER PROTEIN TRANSPORT 20-AUG-18 6AHO TITLE CRYSTAL STRUCTURE OF KAP114P COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMPORTIN SUBUNIT BETA-5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 114 KDA KARYOPHERIN,KARYOPHERIN SUBUNIT BETA-5,KARYOPHERIN- COMPND 5 114; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: KAP114, YGL241W, HRC1004; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KARYOPHERIN, TATA BOX BINDING PROTEIN, TRANSCRIPTION, NUCLEAR KEYWDS 2 TRANSPORT, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR C.C.LIAO,S.SHANKAR,G.R.AHMED,K.C.HSIA REVDAT 6 27-MAR-24 6AHO 1 REMARK REVDAT 5 22-JUL-20 6AHO 1 JRNL REVDAT 4 01-JUL-20 6AHO 1 JRNL REVDAT 3 17-JUN-20 6AHO 1 JRNL REVDAT 2 10-JUN-20 6AHO 1 JRNL REVDAT 1 23-OCT-19 6AHO 0 JRNL AUTH C.C.LIAO,S.SHANKAR,W.C.PI,C.C.CHANG,G.R.AHMED,W.Y.CHEN, JRNL AUTH 2 K.C.HSIA JRNL TITL KARYOPHERIN KAP114P-MEDIATED TRANS-REPRESSION CONTROLS JRNL TITL 2 RIBOSOMAL GENE EXPRESSION UNDER SALINE STRESS. JRNL REF EMBO REP. V. 21 2020 JRNL REFN ESSN 1469-3178 JRNL PMID 32484313 JRNL DOI 10.15252/EMBR.201948324 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 51222 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9746 - 5.9796 0.99 3752 151 0.1589 0.1654 REMARK 3 2 5.9796 - 4.7674 1.00 3622 142 0.1988 0.2881 REMARK 3 3 4.7674 - 4.1710 1.00 3588 141 0.1705 0.2062 REMARK 3 4 4.1710 - 3.7925 1.00 3575 145 0.1966 0.2815 REMARK 3 5 3.7925 - 3.5223 1.00 3556 147 0.2270 0.2885 REMARK 3 6 3.5223 - 3.3156 1.00 3530 144 0.2450 0.2835 REMARK 3 7 3.3156 - 3.1502 1.00 3536 142 0.2490 0.3149 REMARK 3 8 3.1502 - 3.0136 1.00 3529 142 0.2702 0.3492 REMARK 3 9 3.0136 - 2.8979 1.00 3546 142 0.2749 0.3441 REMARK 3 10 2.8979 - 2.7982 1.00 3510 140 0.2708 0.3985 REMARK 3 11 2.7982 - 2.7109 0.99 3476 139 0.2842 0.3645 REMARK 3 12 2.7109 - 2.6336 1.00 3513 144 0.2975 0.3407 REMARK 3 13 2.6336 - 2.5644 0.99 3466 140 0.3176 0.4011 REMARK 3 14 2.5644 - 2.5020 0.87 3037 127 0.3384 0.3964 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7407 REMARK 3 ANGLE : 1.258 10036 REMARK 3 CHIRALITY : 0.065 1218 REMARK 3 PLANARITY : 0.006 1266 REMARK 3 DIHEDRAL : 18.741 4542 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 13.1701 81.8144 63.7939 REMARK 3 T TENSOR REMARK 3 T11: 0.1930 T22: 0.2963 REMARK 3 T33: 0.2897 T12: 0.0766 REMARK 3 T13: 0.0001 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.0881 L22: 0.1450 REMARK 3 L33: 0.5782 L12: 0.1146 REMARK 3 L13: 0.0026 L23: 0.0958 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: 0.0547 S13: 0.0283 REMARK 3 S21: 0.0182 S22: 0.0016 S23: 0.0173 REMARK 3 S31: 0.1092 S32: 0.0293 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1300008766. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51352 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.52300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.43 M CITRIC ACID, 0.057 M BIS TRIS REMARK 280 PROPANE (PH 5.8), 17% PEG3350, 0.01 M ETHYLENEDIAMINETETRAACETIC REMARK 280 ACID DISODIUM SALT DIHYDRATE, AND 3% V/V ETHANOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.00500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 126.01000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 126.01000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.00500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 12 REMARK 465 ALA A 13 REMARK 465 ASP A 14 REMARK 465 TYR A 76 REMARK 465 ARG A 77 REMARK 465 SER A 78 REMARK 465 THR A 79 REMARK 465 SER A 80 REMARK 465 ASN A 208 REMARK 465 GLU A 209 REMARK 465 TYR A 210 REMARK 465 ALA A 293 REMARK 465 ASN A 294 REMARK 465 VAL A 295 REMARK 465 GLU A 296 REMARK 465 THR A 297 REMARK 465 THR A 298 REMARK 465 GLU A 299 REMARK 465 SER A 300 REMARK 465 GLU A 301 REMARK 465 LYS A 565 REMARK 465 GLU A 566 REMARK 465 TYR A 856 REMARK 465 GLU A 857 REMARK 465 GLY A 858 REMARK 465 ASP A 859 REMARK 465 LEU A 860 REMARK 465 ILE A 861 REMARK 465 ILE A 862 REMARK 465 THR A 863 REMARK 465 ARG A 864 REMARK 465 SER A 865 REMARK 465 MET A 866 REMARK 465 ALA A 867 REMARK 465 LYS A 868 REMARK 465 LYS A 869 REMARK 465 MET A 870 REMARK 465 SER A 906 REMARK 465 ASP A 907 REMARK 465 ILE A 908 REMARK 465 LYS A 909 REMARK 465 GLN A 910 REMARK 465 GLU A 911 REMARK 465 VAL A 912 REMARK 465 VAL A 913 REMARK 465 ASN A 914 REMARK 465 ALA A 915 REMARK 465 ASN A 916 REMARK 465 LYS A 917 REMARK 465 ASP A 918 REMARK 465 ASP A 919 REMARK 465 ASP A 920 REMARK 465 ASN A 921 REMARK 465 ASP A 922 REMARK 465 ASP A 923 REMARK 465 TRP A 924 REMARK 465 GLU A 925 REMARK 465 ASP A 926 REMARK 465 VAL A 927 REMARK 465 ASP A 928 REMARK 465 ASP A 929 REMARK 465 VAL A 930 REMARK 465 LEU A 931 REMARK 465 ASP A 932 REMARK 465 TYR A 933 REMARK 465 ASP A 934 REMARK 465 LYS A 935 REMARK 465 LEU A 936 REMARK 465 LYS A 937 REMARK 465 GLU A 938 REMARK 465 TYR A 939 REMARK 465 ILE A 940 REMARK 465 ASP A 941 REMARK 465 ASP A 942 REMARK 465 ASP A 943 REMARK 465 VAL A 944 REMARK 465 ASP A 945 REMARK 465 GLU A 946 REMARK 465 GLU A 947 REMARK 465 ALA A 948 REMARK 465 ASP A 949 REMARK 465 ASP A 950 REMARK 465 ASP A 951 REMARK 465 SER A 952 REMARK 465 ASP A 953 REMARK 465 ASP A 954 REMARK 465 ILE A 955 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 62 NE2 GLN A 117 1.79 REMARK 500 OE1 GLU A 719 NH2 ARG A 755 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 29 CB CYS A 29 SG -0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 6 CA - CB - CG ANGL. DEV. = 18.4 DEGREES REMARK 500 LEU A 6 CB - CG - CD2 ANGL. DEV. = -17.6 DEGREES REMARK 500 LEU A 25 CA - CB - CG ANGL. DEV. = -31.0 DEGREES REMARK 500 ARG A 91 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 70 111.67 -166.60 REMARK 500 GLU A 74 62.44 -154.99 REMARK 500 SER A 206 44.68 -77.58 REMARK 500 PHE A 238 -176.76 -61.25 REMARK 500 PHE A 269 86.02 -150.18 REMARK 500 ASN A 371 -168.16 -122.68 REMARK 500 PRO A 384 -179.64 -68.20 REMARK 500 HIS A 401 28.69 -77.34 REMARK 500 SER A 402 18.10 -156.05 REMARK 500 GLU A 429 -71.58 -56.64 REMARK 500 ASN A 430 54.30 -116.44 REMARK 500 GLU A 450 54.36 -114.61 REMARK 500 TYR A 637 28.83 47.86 REMARK 500 ASP A 787 88.59 -163.42 REMARK 500 ASN A 802 -24.94 74.57 REMARK 500 LYS A 896 94.32 -67.17 REMARK 500 LEU A1003 30.69 -92.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 440 THR A 441 147.08 REMARK 500 GLU A 545 GLU A 546 -147.49 REMARK 500 GLN A 897 PRO A 898 -145.11 REMARK 500 REMARK 500 REMARK: NULL DBREF 6AHO A 1 1004 UNP P53067 IMB5_YEAST 1 1004 SEQADV 6AHO GLY A -4 UNP P53067 EXPRESSION TAG SEQADV 6AHO PRO A -3 UNP P53067 EXPRESSION TAG SEQADV 6AHO LEU A -2 UNP P53067 EXPRESSION TAG SEQADV 6AHO GLY A -1 UNP P53067 EXPRESSION TAG SEQADV 6AHO SER A 0 UNP P53067 EXPRESSION TAG SEQRES 1 A 1009 GLY PRO LEU GLY SER MET ASP ILE ASN GLU LEU ILE ILE SEQRES 2 A 1009 GLY ALA GLN SER ALA ASP LYS HIS THR ARG GLU VAL ALA SEQRES 3 A 1009 GLU THR GLN LEU LEU GLN TRP CYS ASP SER ASP ALA SER SEQRES 4 A 1009 GLN VAL PHE LYS ALA LEU ALA ASN VAL ALA LEU GLN HIS SEQRES 5 A 1009 GLU ALA SER LEU GLU SER ARG GLN PHE ALA LEU LEU SER SEQRES 6 A 1009 LEU ARG LYS LEU ILE THR MET TYR TRP SER PRO GLY PHE SEQRES 7 A 1009 GLU SER TYR ARG SER THR SER ASN VAL GLU ILE ASP VAL SEQRES 8 A 1009 LYS ASP PHE ILE ARG GLU VAL LEU LEU LYS LEU CYS LEU SEQRES 9 A 1009 ASN ASP ASN GLU ASN THR LYS ILE LYS ASN GLY ALA SER SEQRES 10 A 1009 TYR CYS ILE VAL GLN ILE SER ALA VAL ASP PHE PRO ASP SEQRES 11 A 1009 GLN TRP PRO GLN LEU LEU THR VAL ILE TYR ASP ALA ILE SEQRES 12 A 1009 SER HIS GLN HIS SER LEU ASN ALA MET SER LEU LEU ASN SEQRES 13 A 1009 GLU ILE TYR ASP ASP VAL VAL SER GLU GLU MET PHE PHE SEQRES 14 A 1009 GLU GLY GLY ILE GLY LEU ALA THR MET GLU ILE VAL PHE SEQRES 15 A 1009 LYS VAL LEU ASN THR GLU THR SER THR LEU ILE ALA LYS SEQRES 16 A 1009 ILE ALA ALA LEU LYS LEU LEU LYS ALA CYS LEU LEU GLN SEQRES 17 A 1009 MET SER SER HIS ASN GLU TYR ASP GLU ALA SER ARG LYS SEQRES 18 A 1009 SER PHE VAL SER GLN CYS LEU ALA THR SER LEU GLN ILE SEQRES 19 A 1009 LEU GLY GLN LEU LEU THR LEU ASN PHE GLY ASN VAL ASP SEQRES 20 A 1009 VAL ILE SER GLN LEU LYS PHE LYS SER ILE ILE TYR GLU SEQRES 21 A 1009 ASN LEU VAL PHE ILE LYS ASN ASP PHE SER ARG LYS HIS SEQRES 22 A 1009 PHE SER SER GLU LEU GLN LYS GLN PHE LYS ILE MET ALA SEQRES 23 A 1009 ILE GLN ASP LEU GLU ASN VAL THR HIS ILE ASN ALA ASN SEQRES 24 A 1009 VAL GLU THR THR GLU SER GLU PRO LEU LEU GLU THR VAL SEQRES 25 A 1009 HIS ASP CYS SER ILE TYR ILE VAL GLU PHE LEU THR SER SEQRES 26 A 1009 VAL CYS THR LEU GLN PHE SER VAL GLU GLU MET ASN LYS SEQRES 27 A 1009 ILE ILE THR SER LEU THR ILE LEU CYS GLN LEU SER SER SEQRES 28 A 1009 GLU THR ARG GLU ILE TRP THR SER ASP PHE ASN THR PHE SEQRES 29 A 1009 VAL SER LYS GLU THR GLY LEU ALA ALA SER TYR ASN VAL SEQRES 30 A 1009 ARG ASP GLN ALA ASN GLU PHE PHE THR SER LEU PRO ASN SEQRES 31 A 1009 PRO GLN LEU SER LEU ILE PHE LYS VAL VAL SER ASN ASP SEQRES 32 A 1009 ILE GLU HIS SER THR CYS ASN TYR SER THR LEU GLU SER SEQRES 33 A 1009 LEU LEU TYR LEU LEU GLN CYS ILE LEU LEU ASN ASP ASP SEQRES 34 A 1009 GLU ILE THR GLY GLU ASN ILE ASP GLN SER LEU GLN ILE SEQRES 35 A 1009 LEU ILE LYS THR LEU GLU ASN ILE LEU VAL SER GLN GLU SEQRES 36 A 1009 ILE PRO GLU LEU ILE LEU ALA ARG ALA ILE LEU THR ILE SEQRES 37 A 1009 PRO ARG VAL LEU ASP LYS PHE ILE ASP ALA LEU PRO ASP SEQRES 38 A 1009 ILE LYS PRO LEU THR SER ALA PHE LEU ALA LYS SER LEU SEQRES 39 A 1009 ASN LEU ALA LEU LYS SER ASP LYS GLU LEU ILE LYS SER SEQRES 40 A 1009 ALA THR LEU ILE ALA PHE THR TYR TYR CYS TYR PHE ALA SEQRES 41 A 1009 GLU LEU ASP SER VAL LEU GLY PRO GLU VAL CYS SER GLU SEQRES 42 A 1009 THR GLN GLU LYS VAL ILE ARG ILE ILE ASN GLN VAL SER SEQRES 43 A 1009 SER ASP ALA GLU GLU ASP THR ASN GLY ALA LEU MET GLU SEQRES 44 A 1009 VAL LEU SER GLN VAL ILE SER TYR ASN PRO LYS GLU PRO SEQRES 45 A 1009 HIS SER ARG LYS GLU ILE LEU GLN ALA GLU PHE HIS LEU SEQRES 46 A 1009 VAL PHE THR ILE SER SER GLU ASP PRO ALA ASN VAL GLN SEQRES 47 A 1009 VAL VAL VAL GLN SER GLN GLU CYS LEU GLU LYS LEU LEU SEQRES 48 A 1009 ASP ASN ILE ASN MET ASP ASN TYR LYS ASN TYR ILE GLU SEQRES 49 A 1009 LEU CYS LEU PRO SER PHE ILE ASN VAL LEU ASP SER ASN SEQRES 50 A 1009 ASN ALA ASN ASN TYR ARG TYR SER PRO LEU LEU SER LEU SEQRES 51 A 1009 VAL LEU GLU PHE ILE THR VAL PHE LEU LYS LYS LYS PRO SEQRES 52 A 1009 ASN ASP GLY PHE LEU PRO ASP GLU ILE ASN GLN TYR LEU SEQRES 53 A 1009 PHE GLU PRO LEU ALA LYS VAL LEU ALA PHE SER THR GLU SEQRES 54 A 1009 ASP GLU THR LEU GLN LEU ALA THR GLU ALA PHE SER TYR SEQRES 55 A 1009 LEU ILE PHE ASN THR ASP THR ARG ALA MET GLU PRO ARG SEQRES 56 A 1009 LEU MET ASP ILE MET LYS VAL LEU GLU ARG LEU LEU SER SEQRES 57 A 1009 LEU GLU VAL SER ASP SER ALA ALA MET ASN VAL GLY PRO SEQRES 58 A 1009 LEU VAL VAL ALA ILE PHE THR ARG PHE SER LYS GLU ILE SEQRES 59 A 1009 GLN PRO LEU ILE GLY ARG ILE LEU GLU ALA VAL VAL VAL SEQRES 60 A 1009 ARG LEU ILE LYS THR GLN ASN ILE SER THR GLU GLN ASN SEQRES 61 A 1009 LEU LEU SER VAL LEU CYS PHE LEU THR CYS ASN ASP PRO SEQRES 62 A 1009 LYS GLN THR VAL ASP PHE LEU SER SER PHE GLN ILE ASP SEQRES 63 A 1009 ASN THR ASP ALA LEU THR LEU VAL MET ARG LYS TRP ILE SEQRES 64 A 1009 GLU ALA PHE GLU VAL ILE ARG GLY GLU LYS ARG ILE LYS SEQRES 65 A 1009 GLU ASN ILE VAL ALA LEU SER ASN LEU PHE PHE LEU ASN SEQRES 66 A 1009 ASP LYS ARG LEU GLN LYS VAL VAL VAL ASN GLY ASN LEU SEQRES 67 A 1009 ILE PRO TYR GLU GLY ASP LEU ILE ILE THR ARG SER MET SEQRES 68 A 1009 ALA LYS LYS MET PRO ASP ARG TYR VAL GLN VAL PRO LEU SEQRES 69 A 1009 TYR THR LYS ILE ILE LYS LEU PHE VAL SER GLU LEU SER SEQRES 70 A 1009 PHE GLN SER LYS GLN PRO ASN PRO GLU GLN LEU ILE THR SEQRES 71 A 1009 SER ASP ILE LYS GLN GLU VAL VAL ASN ALA ASN LYS ASP SEQRES 72 A 1009 ASP ASP ASN ASP ASP TRP GLU ASP VAL ASP ASP VAL LEU SEQRES 73 A 1009 ASP TYR ASP LYS LEU LYS GLU TYR ILE ASP ASP ASP VAL SEQRES 74 A 1009 ASP GLU GLU ALA ASP ASP ASP SER ASP ASP ILE THR GLY SEQRES 75 A 1009 LEU MET ASP VAL LYS GLU SER VAL VAL GLN LEU LEU VAL SEQRES 76 A 1009 ARG PHE PHE LYS GLU VAL ALA SER LYS ASP VAL SER GLY SEQRES 77 A 1009 PHE HIS CYS ILE TYR GLU THR LEU SER ASP SER GLU ARG SEQRES 78 A 1009 LYS VAL LEU SER GLU ALA LEU LEU HELIX 1 AA1 ASP A 2 GLY A 9 1 8 HELIX 2 AA2 HIS A 16 ASP A 32 1 17 HELIX 3 AA3 ALA A 33 GLN A 46 1 14 HELIX 4 AA4 SER A 50 TRP A 69 1 20 HELIX 5 AA5 GLU A 83 LEU A 99 1 17 HELIX 6 AA6 ASN A 104 TRP A 127 1 24 HELIX 7 AA7 GLN A 129 GLN A 141 1 13 HELIX 8 AA8 SER A 143 VAL A 158 1 16 HELIX 9 AA9 SER A 159 GLU A 165 1 7 HELIX 10 AB1 GLY A 167 ASN A 181 1 15 HELIX 11 AB2 THR A 186 SER A 206 1 21 HELIX 12 AB3 GLU A 212 SER A 214 5 3 HELIX 13 AB4 ARG A 215 LEU A 234 1 20 HELIX 14 AB5 ASP A 242 PHE A 264 1 23 HELIX 15 AB6 SER A 265 PHE A 269 5 5 HELIX 16 AB7 SER A 270 HIS A 290 1 21 HELIX 17 AB8 LEU A 303 VAL A 321 1 19 HELIX 18 AB9 SER A 327 CYS A 342 1 16 HELIX 19 AC1 SER A 345 ASP A 355 1 11 HELIX 20 AC2 ASP A 355 THR A 364 1 10 HELIX 21 AC3 ASN A 371 THR A 381 1 11 HELIX 22 AC4 PRO A 384 HIS A 401 1 18 HELIX 23 AC5 THR A 408 LEU A 421 1 14 HELIX 24 AC6 ASN A 430 SER A 448 1 19 HELIX 25 AC7 PRO A 452 PHE A 470 1 19 HELIX 26 AC8 ILE A 471 LEU A 474 5 4 HELIX 27 AC9 ASP A 476 SER A 495 1 20 HELIX 28 AD1 LYS A 497 ALA A 515 1 19 HELIX 29 AD2 GLU A 516 LEU A 521 1 6 HELIX 30 AD3 GLY A 522 SER A 542 1 21 HELIX 31 AD4 GLU A 545 TYR A 562 1 18 HELIX 32 AD5 ARG A 570 ASP A 588 1 19 HELIX 33 AD6 ASN A 591 LEU A 606 1 16 HELIX 34 AD7 ASN A 610 ASN A 635 1 26 HELIX 35 AD8 SER A 640 LYS A 655 1 16 HELIX 36 AD9 PRO A 664 SER A 682 1 19 HELIX 37 AE1 GLU A 684 ASN A 701 1 18 HELIX 38 AE2 ASP A 703 GLU A 708 1 6 HELIX 39 AE3 ARG A 710 SER A 723 1 14 HELIX 40 AE4 SER A 727 MET A 732 1 6 HELIX 41 AE5 VAL A 734 PHE A 745 1 12 HELIX 42 AE6 PHE A 745 GLN A 750 1 6 HELIX 43 AE7 LEU A 752 THR A 767 1 16 HELIX 44 AE8 ASN A 769 ASP A 787 1 19 HELIX 45 AE9 ASP A 787 SER A 796 1 10 HELIX 46 AF1 ALA A 805 GLU A 818 1 14 HELIX 47 AF2 GLY A 822 PHE A 838 1 17 HELIX 48 AF3 ASP A 841 VAL A 847 1 7 HELIX 49 AF4 LEU A 879 LYS A 896 1 18 HELIX 50 AF5 SER A 964 ASP A 980 1 17 HELIX 51 AF6 GLY A 983 LEU A 991 1 9 HELIX 52 AF7 SER A 992 LEU A 1003 1 12 SHEET 1 AA1 2 GLN A 799 ILE A 800 0 SHEET 2 AA1 2 THR A 803 ASP A 804 -1 O THR A 803 N ILE A 800 SHEET 1 AA2 2 VAL A 848 ILE A 854 0 SHEET 2 AA2 2 ARG A 873 PRO A 878 -1 O VAL A 877 N VAL A 849 CISPEP 1 PRO A 71 GLY A 72 0 11.50 CRYST1 116.623 116.623 189.015 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008575 0.004951 0.000000 0.00000 SCALE2 0.000000 0.009901 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005291 0.00000