HEADER SUGAR BINDING PROTEIN 21-AUG-18 6AHZ TITLE THE NMR STRUCTURE OF THE POLYSIALYLTRANSEFERASE DOMAIN (PSTD) IN TITLE 2 POLYSIALYLTRANSFERASE ST8SIAIV COMPND MOL_ID: 1; COMPND 2 MOLECULE: CMP-N-ACETYLNEURAMINATE-POLY-ALPHA-2,8-SIALYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-2,8-SIALYLTRANSFERASE 8D,POLYSIALYLTRANSFERASE-1, COMPND 5 SIALYLTRANSFERASE 8D,SIAT8-D,SIALYLTRANSFERASE ST8SIA IV,ST8SIAIV; COMPND 6 EC: 2.4.99.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS POLYSIALYLTRANSFERASE, POLYSIALYLTRANSFERASE DOMAIN, POLYSIALIC ACID, KEYWDS 2 SUGAR BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.H.LIU,B.LU,L.X.PENG,S.M.LIAO,F.ZHOU,D.CHEN,Z.L.LU,G.P.ZHOU, AUTHOR 2 R.B.HUANG REVDAT 3 14-JUN-23 6AHZ 1 REMARK REVDAT 2 06-MAY-20 6AHZ 1 JRNL REMARK REVDAT 1 24-OCT-18 6AHZ 0 JRNL AUTH L.X.PENG,X.H.LIU,B.LU,S.M.LIAO,F.ZHOU,J.M.HUANG,D.CHEN, JRNL AUTH 2 F.A.TROY II,G.P.ZHOU,R.B.HUANG JRNL TITL THE INHIBITION OF POLYSIALYLTRANSEFERASE ST8SIAIV THROUGH JRNL TITL 2 HEPARIN BINDING TO POLYSIALYLTRANSFERASE DOMAIN (PSTD). JRNL REF MED CHEM V. 15 486 2019 JRNL REFN ISSN 1875-6638 JRNL PMID 30569872 JRNL DOI 10.2174/1573406415666181218101623 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AHZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1300008692. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 25 % V/V DETURATED EXPECT REMARK 210 HYDROXYL GROUP TRIFLUOROETHANOL, REMARK 210 1 MM PSTD_35AA, 65 % V/V H2O, 20 REMARK 210 MM PBS, 10 % V/V D2O, 25% TFE/65% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-13C HSQC; 2D 1H-15N HSQC; REMARK 210 2D 1H-13C HSQCTOXY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : DD2 800MHZ REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR, NMRPIPE, VNMRJ 3.2, ARIA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 27 -71.01 -108.33 REMARK 500 1 ILE A 31 -100.41 56.73 REMARK 500 2 TYR A 11 -164.45 -101.23 REMARK 500 2 PRO A 12 -18.39 -39.00 REMARK 500 2 ASN A 27 -71.16 -102.22 REMARK 500 2 ILE A 31 -71.93 -94.54 REMARK 500 3 TYR A 11 -164.09 -104.08 REMARK 500 3 PRO A 12 -26.41 -39.34 REMARK 500 3 ASN A 27 -70.58 -110.46 REMARK 500 3 ILE A 31 -153.73 -90.33 REMARK 500 4 LYS A 2 77.01 56.11 REMARK 500 4 TYR A 11 178.50 -59.97 REMARK 500 4 ASN A 27 -71.58 -110.96 REMARK 500 4 ILE A 31 -153.50 -108.63 REMARK 500 5 LYS A 2 24.80 -146.29 REMARK 500 5 TYR A 11 -166.40 -100.63 REMARK 500 5 PRO A 12 -18.85 -47.69 REMARK 500 5 SER A 13 -70.38 -41.78 REMARK 500 5 ASN A 27 -73.57 -105.96 REMARK 500 5 ILE A 31 -138.00 -111.29 REMARK 500 6 LYS A 2 76.00 59.62 REMARK 500 6 TYR A 11 -162.41 -102.87 REMARK 500 6 PRO A 12 -24.39 -38.87 REMARK 500 6 ASN A 27 -70.34 -110.12 REMARK 500 6 ILE A 31 -157.44 -81.43 REMARK 500 7 TYR A 11 -168.78 -101.31 REMARK 500 7 ASN A 27 -70.41 -112.34 REMARK 500 7 ILE A 31 -64.08 -123.51 REMARK 500 8 LYS A 2 56.63 -99.33 REMARK 500 8 TYR A 11 -164.26 -101.83 REMARK 500 8 ASN A 27 -71.47 -106.06 REMARK 500 8 ILE A 31 -139.71 -86.83 REMARK 500 9 TYR A 11 -164.67 -102.32 REMARK 500 9 PRO A 12 -18.20 -42.56 REMARK 500 9 ASN A 27 -70.95 -110.60 REMARK 500 9 ILE A 31 -137.05 -88.12 REMARK 500 10 LYS A 2 -118.13 47.63 REMARK 500 10 TYR A 11 -162.40 -102.13 REMARK 500 10 PRO A 12 -30.67 -38.14 REMARK 500 10 ASN A 27 -72.08 -111.83 REMARK 500 10 ILE A 31 170.34 66.85 REMARK 500 11 LYS A 2 -56.83 70.31 REMARK 500 11 TYR A 11 -169.52 -100.99 REMARK 500 11 ASN A 27 -71.73 -104.79 REMARK 500 11 ILE A 31 -129.10 -101.30 REMARK 500 12 TYR A 11 -167.52 -101.18 REMARK 500 12 ASN A 27 -73.84 -97.31 REMARK 500 12 ILE A 31 -156.01 -80.01 REMARK 500 13 ASN A 27 -71.67 -107.74 REMARK 500 13 ILE A 31 -129.56 -99.95 REMARK 500 REMARK 500 THIS ENTRY HAS 80 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36207 RELATED DB: BMRB REMARK 900 THE NMR STRUCTURE OF THE POLYSIALYLTRANSEFERASE DOMAIN (PSTD) IN REMARK 900 POLYSIALYLTRANSFERASE ST8SIAIV DBREF 6AHZ A 1 35 UNP Q92187 SIA8D_HUMAN 245 279 SEQRES 1 A 35 LEU LYS ASN LYS LEU LYS VAL ARG THR ALA TYR PRO SER SEQRES 2 A 35 LEU ARG LEU ILE HIS ALA VAL ARG GLY TYR TRP LEU THR SEQRES 3 A 35 ASN LYS VAL PRO ILE LYS ARG PRO SER HELIX 1 AA1 LYS A 2 ALA A 10 1 9 HELIX 2 AA2 TYR A 11 THR A 26 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1