HEADER FLAVOPROTEIN 21-AUG-18 6AI7 TITLE MANDELATE OXIDASE MUTANT-Y128F WITH THE C4A-OH-FMN ADDUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXYMANDELATE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.3.46; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS ORIENTALIS; SOURCE 3 ORGANISM_COMMON: NOCARDIA ORIENTALIS; SOURCE 4 ORGANISM_TAXID: 31958; SOURCE 5 GENE: HMO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FMN-DEPENDENT OXIDASE, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.L.LI,K.H.LIN REVDAT 2 22-NOV-23 6AI7 1 REMARK REVDAT 1 28-AUG-19 6AI7 0 JRNL AUTH T.L.LI,K.H.LIN JRNL TITL THE CRYSTAL STRUCTURE OF MANDELATE OXIDASE MUTANT-Y128F WITH JRNL TITL 2 THE C4A-OH-FMN ADDUCT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 29522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1561 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1642 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2452 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.903 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2634 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2571 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3605 ; 2.116 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5881 ; 1.146 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 356 ; 6.299 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;32.156 ;22.321 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 420 ;16.614 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;18.522 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 417 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3050 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 596 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1361 ; 3.189 ; 3.114 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1360 ; 3.187 ; 3.110 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1711 ; 4.594 ; 4.629 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1712 ; 4.593 ; 4.633 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1272 ; 3.706 ; 3.708 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1271 ; 3.701 ; 3.707 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1886 ; 5.727 ; 5.390 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11339 ; 8.750 ;30.155 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 11309 ; 8.748 ;30.170 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6AI7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1300007968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32246 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3SGZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% TASCIMATE, 0.1M BIS-TRIS PROPANE REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 69.28800 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 69.28800 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 53.94450 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 69.28800 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 69.28800 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 53.94450 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 69.28800 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 69.28800 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 53.94450 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 69.28800 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 69.28800 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 53.94450 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 69.28800 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.28800 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 53.94450 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 69.28800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 69.28800 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 53.94450 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 69.28800 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 69.28800 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 53.94450 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 69.28800 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 69.28800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 53.94450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 TYR A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 ALA A 184 REMARK 465 GLY A 185 REMARK 465 THR A 186 REMARK 465 ALA A 187 REMARK 465 ALA A 188 REMARK 465 HIS A 189 REMARK 465 ARG A 190 REMARK 465 ARG A 191 REMARK 465 THR A 192 REMARK 465 GLN A 193 REMARK 465 GLY A 194 REMARK 465 VAL A 195 REMARK 465 SER A 196 REMARK 465 ALA A 197 REMARK 465 VAL A 198 REMARK 465 ALA A 199 REMARK 465 ASP A 200 REMARK 465 HIS A 201 REMARK 465 THR A 202 REMARK 465 ALA A 203 REMARK 465 ARG A 204 REMARK 465 GLU A 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ARG A 131 CE1 PHE A 206 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 269 CD GLU A 269 OE1 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 142 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 237 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 237 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 237 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 8 -20.97 63.58 REMARK 500 VAL A 16 -28.14 -169.61 REMARK 500 LEU A 108 45.33 -96.38 REMARK 500 ARG A 131 -51.07 -25.93 REMARK 500 ALA A 242 1.54 -69.48 REMARK 500 GLN A 256 -110.25 -111.99 REMARK 500 ALA A 316 34.16 -164.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9Q6 A 401 DBREF 6AI7 A 1 357 UNP O52792 HMO_AMYOR 1 357 SEQADV 6AI7 GLY A -2 UNP O52792 EXPRESSION TAG SEQADV 6AI7 SER A -1 UNP O52792 EXPRESSION TAG SEQADV 6AI7 HIS A 0 UNP O52792 EXPRESSION TAG SEQADV 6AI7 PHE A 128 UNP O52792 TYR 128 ENGINEERED MUTATION SEQRES 1 A 360 GLY SER HIS MET THR TYR VAL SER LEU ALA ASP LEU GLU SEQRES 2 A 360 ARG ALA ALA ARG ASP VAL LEU PRO GLY GLU ILE PHE ASP SEQRES 3 A 360 PHE LEU ALA GLY GLY SER GLY THR GLU ALA SER LEU VAL SEQRES 4 A 360 ALA ASN ARG THR ALA LEU GLU ARG VAL PHE VAL ILE PRO SEQRES 5 A 360 ARG MET LEU ARG ASP LEU THR ASP VAL THR THR GLU ILE SEQRES 6 A 360 ASP ILE PHE GLY ARG ARG ALA ALA LEU PRO MET ALA VAL SEQRES 7 A 360 ALA PRO VAL ALA TYR GLN ARG LEU PHE HIS PRO GLU GLY SEQRES 8 A 360 GLU LEU ALA VAL ALA ARG ALA ALA ARG ASP ALA GLY VAL SEQRES 9 A 360 PRO TYR THR ILE CYS THR LEU SER SER VAL SER LEU GLU SEQRES 10 A 360 GLU ILE ALA ALA VAL GLY GLY ARG PRO TRP PHE GLN LEU SEQRES 11 A 360 PHE TRP LEU ARG ASP GLU LYS ARG SER LEU ASP LEU VAL SEQRES 12 A 360 ARG ARG ALA GLU ASP ALA GLY CYS GLU ALA ILE VAL PHE SEQRES 13 A 360 THR VAL ASP VAL PRO TRP MET GLY ARG ARG LEU ARG ASP SEQRES 14 A 360 MET ARG ASN GLY PHE ALA LEU PRO GLU TRP VAL THR ALA SEQRES 15 A 360 ALA ASN PHE ASP ALA GLY THR ALA ALA HIS ARG ARG THR SEQRES 16 A 360 GLN GLY VAL SER ALA VAL ALA ASP HIS THR ALA ARG GLU SEQRES 17 A 360 PHE ALA PRO ALA THR TRP GLU SER VAL GLU ALA VAL ARG SEQRES 18 A 360 ALA HIS THR ASP LEU PRO VAL VAL LEU LYS GLY ILE LEU SEQRES 19 A 360 ALA VAL GLU ASP ALA ARG ARG ALA VAL ASP ALA GLY ALA SEQRES 20 A 360 GLY GLY ILE VAL VAL SER ASN HIS GLY GLY ARG GLN LEU SEQRES 21 A 360 ASP GLY ALA VAL PRO GLY ILE GLU MET LEU GLY GLU ILE SEQRES 22 A 360 VAL ALA ALA VAL SER GLY GLY CYS GLU VAL LEU VAL ASP SEQRES 23 A 360 GLY GLY ILE ARG SER GLY GLY ASP VAL LEU LYS ALA THR SEQRES 24 A 360 ALA LEU GLY ALA SER ALA VAL LEU VAL GLY ARG PRO VAL SEQRES 25 A 360 MET TRP ALA LEU ALA ALA ALA GLY GLN ASP GLY VAL ARG SEQRES 26 A 360 GLN LEU LEU GLU LEU LEU ALA GLU GLU VAL ARG ASP ALA SEQRES 27 A 360 MET GLY LEU ALA GLY CYS GLU SER VAL GLY ALA ALA ARG SEQRES 28 A 360 ARG LEU ASN THR LYS LEU GLY VAL VAL HET 9Q6 A 401 32 HETNAM 9Q6 1-DEOXY-1-[(4AS)-4A-HYDROXY-7,8-DIMETHYL-2,4-DIOXO-3,4, HETNAM 2 9Q6 4A,5-TETRAHYDROBENZO[G]PTERIDIN-10(2H)-YL]-5-O- HETNAM 3 9Q6 PHOSPHONO-D-RIBITOL FORMUL 2 9Q6 C17 H23 N4 O10 P FORMUL 3 HOH *74(H2 O) HELIX 1 AA1 ASP A 8 ASP A 15 1 8 HELIX 2 AA2 PRO A 18 GLY A 27 1 10 HELIX 3 AA3 GLU A 32 ARG A 44 1 13 HELIX 4 AA4 TYR A 80 PHE A 84 5 5 HELIX 5 AA5 GLU A 87 GLY A 100 1 14 HELIX 6 AA6 SER A 112 VAL A 119 1 8 HELIX 7 AA7 ASP A 132 ALA A 146 1 15 HELIX 8 AA8 ARG A 163 GLY A 170 1 8 HELIX 9 AA9 THR A 210 THR A 221 1 12 HELIX 10 AB1 ALA A 232 ALA A 242 1 11 HELIX 11 AB2 ASN A 251 ARG A 255 5 5 HELIX 12 AB3 PRO A 262 SER A 275 1 14 HELIX 13 AB4 SER A 288 LEU A 298 1 11 HELIX 14 AB5 GLY A 306 ALA A 339 1 34 HELIX 15 AB6 SER A 343 ARG A 349 1 7 SHEET 1 AA1 2 VAL A 45 VAL A 47 0 SHEET 2 AA1 2 THR A 352 LEU A 354 -1 O LYS A 353 N PHE A 46 SHEET 1 AA2 2 ILE A 62 ILE A 64 0 SHEET 2 AA2 2 ARG A 67 ALA A 69 -1 O ARG A 67 N ILE A 64 SHEET 1 AA3 9 MET A 73 VAL A 75 0 SHEET 2 AA3 9 TYR A 103 CYS A 106 1 O THR A 104 N VAL A 75 SHEET 3 AA3 9 PRO A 123 LEU A 127 1 O TRP A 124 N ILE A 105 SHEET 4 AA3 9 ILE A 151 THR A 154 1 O VAL A 152 N PHE A 125 SHEET 5 AA3 9 VAL A 225 ILE A 230 1 O LYS A 228 N PHE A 153 SHEET 6 AA3 9 GLY A 246 VAL A 249 1 O VAL A 248 N LEU A 227 SHEET 7 AA3 9 GLU A 279 VAL A 282 1 O LEU A 281 N VAL A 249 SHEET 8 AA3 9 ALA A 302 VAL A 305 1 O LEU A 304 N VAL A 282 SHEET 9 AA3 9 MET A 73 VAL A 75 1 N ALA A 74 O VAL A 305 SITE 1 AC1 19 PHE A 24 LEU A 25 PRO A 77 CYS A 106 SITE 2 AC1 19 PHE A 128 THR A 154 LYS A 228 SER A 250 SITE 3 AC1 19 HIS A 252 ARG A 255 ASP A 283 GLY A 284 SITE 4 AC1 19 GLY A 285 ARG A 287 GLY A 306 ARG A 307 SITE 5 AC1 19 HOH A 505 HOH A 506 HOH A 548 CRYST1 138.576 138.576 107.889 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007216 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009269 0.00000