HEADER LIGASE 24-AUG-18 6AIK TITLE CAB2 MUTANT H337A COMPLEX WITH PHOSPHOPANTOTHENOYL-CMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOPANTOTHENATE--CYSTEINE LIGASE CAB2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: COENZYME A BIOSYNTHESIS PROTEIN 2, COMPND 5 PHOSPHOPANTOTHENOYLCYSTEINE SYNTHETASE,PPC SYNTHETASE; COMPND 6 EC: 6.3.2.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 ATCC: 204508; SOURCE 7 GENE: CAB2, YIL083C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHOPANTOTHENATE--CYSTEINE LIGASE, COMPLEX, PHOSPHOPANTOTHENOYL- KEYWDS 2 CMP, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR P.ZHENG,Z.ZHU REVDAT 2 22-NOV-23 6AIK 1 REMARK REVDAT 1 20-MAR-19 6AIK 0 JRNL AUTH P.ZHENG,M.ZHANG,M.H.KHAN,H.LIU,Y.JIN,J.YUE,Y.GAO,M.TENG, JRNL AUTH 2 Z.ZHU,L.NIU JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF THE CATALYTIC MECHANISM OF JRNL TITL 2 PHOSPHOPANTOTHENOYLCYSTEINE SYNTHETASE FROM SACCHAROMYCES JRNL TITL 3 CEREVISIAE. JRNL REF J. MOL. BIOL. V. 431 764 2019 JRNL REFN ESSN 1089-8638 JRNL PMID 30653991 JRNL DOI 10.1016/J.JMB.2019.01.012 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 52252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2669 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3427 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 179 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5042 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 511 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.81000 REMARK 3 B22 (A**2) : -1.66000 REMARK 3 B33 (A**2) : 0.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5234 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5030 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7092 ; 1.500 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11589 ; 3.452 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 614 ; 6.189 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;38.459 ;24.321 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 941 ;14.260 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.379 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 793 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5766 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1210 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6AIK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1300008820. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54950 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 56.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.92600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1P9O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM POTASSIUM SODIUM TARTRATE 20% REMARK 280 PEG3350 2MM MNCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.25650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 PRO A 3 REMARK 465 LEU A 4 REMARK 465 PRO A 5 REMARK 465 VAL A 6 REMARK 465 LEU A 7 REMARK 465 ASN A 8 REMARK 465 ARG A 9 REMARK 465 PRO A 10 REMARK 465 GLN A 11 REMARK 465 ILE A 12 REMARK 465 HIS A 13 REMARK 465 THR A 14 REMARK 465 SER A 15 REMARK 465 VAL A 16 REMARK 465 THR A 17 REMARK 465 GLU A 18 REMARK 465 ILE A 19 REMARK 465 SER A 20 REMARK 465 HIS A 21 REMARK 465 ALA A 22 REMARK 465 ILE A 23 REMARK 465 ASP A 24 REMARK 465 ARG A 25 REMARK 465 THR A 26 REMARK 465 ILE A 27 REMARK 465 LYS A 28 REMARK 465 GLU A 29 REMARK 465 GLU A 30 REMARK 465 LEU A 31 REMARK 465 PHE A 32 REMARK 465 PRO A 33 REMARK 465 VAL A 34 REMARK 465 ALA A 35 REMARK 465 TYR A 36 REMARK 465 THR A 37 REMARK 465 SER A 229 REMARK 465 GLY A 230 REMARK 465 ASP A 231 REMARK 465 ASN A 232 REMARK 465 GLY A 233 REMARK 465 LYS A 234 REMARK 465 MET A 235 REMARK 465 GLY A 236 REMARK 465 ALA A 237 REMARK 465 ASN A 238 REMARK 465 ASN A 239 REMARK 465 ASP A 240 REMARK 465 THR A 241 REMARK 465 LYS A 361 REMARK 465 LEU A 362 REMARK 465 ALA A 363 REMARK 465 THR A 364 REMARK 465 LYS A 365 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 PRO B 3 REMARK 465 LEU B 4 REMARK 465 PRO B 5 REMARK 465 VAL B 6 REMARK 465 LEU B 7 REMARK 465 ASN B 8 REMARK 465 ARG B 9 REMARK 465 PRO B 10 REMARK 465 GLN B 11 REMARK 465 ILE B 12 REMARK 465 HIS B 13 REMARK 465 THR B 14 REMARK 465 SER B 15 REMARK 465 VAL B 16 REMARK 465 THR B 17 REMARK 465 GLU B 18 REMARK 465 ILE B 19 REMARK 465 SER B 20 REMARK 465 HIS B 21 REMARK 465 ALA B 22 REMARK 465 ILE B 23 REMARK 465 ASP B 24 REMARK 465 ARG B 25 REMARK 465 THR B 26 REMARK 465 ILE B 27 REMARK 465 LYS B 28 REMARK 465 GLU B 29 REMARK 465 GLU B 30 REMARK 465 LEU B 31 REMARK 465 PHE B 32 REMARK 465 PRO B 33 REMARK 465 VAL B 34 REMARK 465 ALA B 35 REMARK 465 TYR B 36 REMARK 465 THR B 37 REMARK 465 THR B 38 REMARK 465 SER B 229 REMARK 465 GLY B 230 REMARK 465 ASP B 231 REMARK 465 ASN B 232 REMARK 465 GLY B 233 REMARK 465 LYS B 234 REMARK 465 MET B 235 REMARK 465 GLY B 236 REMARK 465 ALA B 237 REMARK 465 ASN B 238 REMARK 465 ASN B 239 REMARK 465 ASP B 240 REMARK 465 THR B 241 REMARK 465 GLU B 242 REMARK 465 LYS B 361 REMARK 465 LEU B 362 REMARK 465 ALA B 363 REMARK 465 THR B 364 REMARK 465 LYS B 365 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 249 C - N - CD ANGL. DEV. = -13.7 DEGREES REMARK 500 LYS B 281 CD - CE - NZ ANGL. DEV. = -22.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 39 -88.43 -129.44 REMARK 500 SER A 99 125.21 -171.32 REMARK 500 TYR A 130 -34.61 78.87 REMARK 500 THR A 183 -56.96 -125.49 REMARK 500 SER A 270 -60.10 -137.60 REMARK 500 ALA A 272 56.87 -143.94 REMARK 500 SER B 99 114.70 -171.34 REMARK 500 TYR B 130 -36.80 79.81 REMARK 500 THR B 183 -57.33 -127.75 REMARK 500 LYS B 226 117.30 -34.02 REMARK 500 SER B 270 -58.94 -139.33 REMARK 500 ASN B 324 75.80 -152.15 REMARK 500 ASP B 333 -162.57 -105.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 325 0.23 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PMT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PMT B 401 DBREF 6AIK A 1 365 UNP P40506 PPCS_YEAST 1 365 DBREF 6AIK B 1 365 UNP P40506 PPCS_YEAST 1 365 SEQADV 6AIK HIS A -5 UNP P40506 EXPRESSION TAG SEQADV 6AIK HIS A -4 UNP P40506 EXPRESSION TAG SEQADV 6AIK HIS A -3 UNP P40506 EXPRESSION TAG SEQADV 6AIK HIS A -2 UNP P40506 EXPRESSION TAG SEQADV 6AIK HIS A -1 UNP P40506 EXPRESSION TAG SEQADV 6AIK HIS A 0 UNP P40506 EXPRESSION TAG SEQADV 6AIK ALA A 337 UNP P40506 HIS 337 ENGINEERED MUTATION SEQADV 6AIK HIS B -5 UNP P40506 EXPRESSION TAG SEQADV 6AIK HIS B -4 UNP P40506 EXPRESSION TAG SEQADV 6AIK HIS B -3 UNP P40506 EXPRESSION TAG SEQADV 6AIK HIS B -2 UNP P40506 EXPRESSION TAG SEQADV 6AIK HIS B -1 UNP P40506 EXPRESSION TAG SEQADV 6AIK HIS B 0 UNP P40506 EXPRESSION TAG SEQADV 6AIK ALA B 337 UNP P40506 HIS 337 ENGINEERED MUTATION SEQRES 1 A 371 HIS HIS HIS HIS HIS HIS MET PRO PRO LEU PRO VAL LEU SEQRES 2 A 371 ASN ARG PRO GLN ILE HIS THR SER VAL THR GLU ILE SER SEQRES 3 A 371 HIS ALA ILE ASP ARG THR ILE LYS GLU GLU LEU PHE PRO SEQRES 4 A 371 VAL ALA TYR THR THR GLU GLU GLU GLN TYR PHE LYS THR SEQRES 5 A 371 ASN PRO LYS PRO ALA TYR ILE ASP GLU LEU ILE LYS ASP SEQRES 6 A 371 ALA LYS GLU PHE ILE ASP LEU GLN TYR SER LEU LYS ARG SEQRES 7 A 371 ASN LYS ILE VAL LEU ILE THR SER GLY GLY THR THR VAL SEQRES 8 A 371 PRO LEU GLU ASN ASN THR VAL ARG PHE ILE ASP ASN PHE SEQRES 9 A 371 SER ALA GLY THR ARG GLY ALA SER SER ALA GLU GLN PHE SEQRES 10 A 371 LEU ALA ASN GLY TYR SER VAL ILE PHE LEU HIS ARG GLU SEQRES 11 A 371 PHE SER LEU THR PRO TYR ASN ARG SER PHE SER HIS SER SEQRES 12 A 371 ILE ASN THR LEU PHE LEU ASP TYR ILE ASP SER GLU GLY SEQRES 13 A 371 LYS ILE LYS PRO GLU PHE ALA GLU ASN VAL LEU LYS ASN SEQRES 14 A 371 LYS LYS LEU TYR ASP LYS TYR MET GLU LYS GLU GLU LYS SEQRES 15 A 371 LEU LEU LEU LEU PRO PHE THR THR VAL ASN GLN TYR LEU SEQRES 16 A 371 TRP SER LEU LYS SER ILE ALA LYS LEU LEU ASN ASN SER SEQRES 17 A 371 GLY CYS LEU PHE TYR LEU ALA ALA ALA VAL SER ASP PHE SEQRES 18 A 371 PHE VAL PRO TYR SER ARG LEU PRO GLN HIS LYS ILE GLN SEQRES 19 A 371 SER GLY ASP ASN GLY LYS MET GLY ALA ASN ASN ASP THR SEQRES 20 A 371 GLU GLY THR THR ARG THR THR PRO ASP GLY LYS LEU ILE SEQRES 21 A 371 VAL ASN LEU ASP PRO VAL PRO LYS PHE LEU ARG ARG LEU SEQRES 22 A 371 VAL GLU SER TRP ALA THR GLN ALA MET ILE VAL SER PHE SEQRES 23 A 371 LYS LEU GLU THR ASP GLU SER MET LEU LEU TYR LYS CYS SEQRES 24 A 371 THR GLN ALA LEU ASP ARG TYR ASN HIS GLN LEU VAL ILE SEQRES 25 A 371 GLY ASN LEU LEU GLN THR ARG ASN LYS GLN VAL ILE PHE SEQRES 26 A 371 VAL SER PRO GLU ASN ARG LYS GLY ASP TRP VAL ARG LEU SEQRES 27 A 371 ASP GLU LYS HIS ALA SER ILE GLU GLU MET ILE ILE PRO SEQRES 28 A 371 GLU VAL ILE ALA ARG HIS ASP LYS TRP VAL ALA HIS SER SEQRES 29 A 371 LYS THR LYS LEU ALA THR LYS SEQRES 1 B 371 HIS HIS HIS HIS HIS HIS MET PRO PRO LEU PRO VAL LEU SEQRES 2 B 371 ASN ARG PRO GLN ILE HIS THR SER VAL THR GLU ILE SER SEQRES 3 B 371 HIS ALA ILE ASP ARG THR ILE LYS GLU GLU LEU PHE PRO SEQRES 4 B 371 VAL ALA TYR THR THR GLU GLU GLU GLN TYR PHE LYS THR SEQRES 5 B 371 ASN PRO LYS PRO ALA TYR ILE ASP GLU LEU ILE LYS ASP SEQRES 6 B 371 ALA LYS GLU PHE ILE ASP LEU GLN TYR SER LEU LYS ARG SEQRES 7 B 371 ASN LYS ILE VAL LEU ILE THR SER GLY GLY THR THR VAL SEQRES 8 B 371 PRO LEU GLU ASN ASN THR VAL ARG PHE ILE ASP ASN PHE SEQRES 9 B 371 SER ALA GLY THR ARG GLY ALA SER SER ALA GLU GLN PHE SEQRES 10 B 371 LEU ALA ASN GLY TYR SER VAL ILE PHE LEU HIS ARG GLU SEQRES 11 B 371 PHE SER LEU THR PRO TYR ASN ARG SER PHE SER HIS SER SEQRES 12 B 371 ILE ASN THR LEU PHE LEU ASP TYR ILE ASP SER GLU GLY SEQRES 13 B 371 LYS ILE LYS PRO GLU PHE ALA GLU ASN VAL LEU LYS ASN SEQRES 14 B 371 LYS LYS LEU TYR ASP LYS TYR MET GLU LYS GLU GLU LYS SEQRES 15 B 371 LEU LEU LEU LEU PRO PHE THR THR VAL ASN GLN TYR LEU SEQRES 16 B 371 TRP SER LEU LYS SER ILE ALA LYS LEU LEU ASN ASN SER SEQRES 17 B 371 GLY CYS LEU PHE TYR LEU ALA ALA ALA VAL SER ASP PHE SEQRES 18 B 371 PHE VAL PRO TYR SER ARG LEU PRO GLN HIS LYS ILE GLN SEQRES 19 B 371 SER GLY ASP ASN GLY LYS MET GLY ALA ASN ASN ASP THR SEQRES 20 B 371 GLU GLY THR THR ARG THR THR PRO ASP GLY LYS LEU ILE SEQRES 21 B 371 VAL ASN LEU ASP PRO VAL PRO LYS PHE LEU ARG ARG LEU SEQRES 22 B 371 VAL GLU SER TRP ALA THR GLN ALA MET ILE VAL SER PHE SEQRES 23 B 371 LYS LEU GLU THR ASP GLU SER MET LEU LEU TYR LYS CYS SEQRES 24 B 371 THR GLN ALA LEU ASP ARG TYR ASN HIS GLN LEU VAL ILE SEQRES 25 B 371 GLY ASN LEU LEU GLN THR ARG ASN LYS GLN VAL ILE PHE SEQRES 26 B 371 VAL SER PRO GLU ASN ARG LYS GLY ASP TRP VAL ARG LEU SEQRES 27 B 371 ASP GLU LYS HIS ALA SER ILE GLU GLU MET ILE ILE PRO SEQRES 28 B 371 GLU VAL ILE ALA ARG HIS ASP LYS TRP VAL ALA HIS SER SEQRES 29 B 371 LYS THR LYS LEU ALA THR LYS HET PMT A 401 39 HET PMT B 401 39 HETNAM PMT PHOSPHORIC ACID MONO-[3-(3-{[5-(4-AMINO-2-OXO-2H- HETNAM 2 PMT PYRIMIDIN-1-YL)-3,4- DIHYDROXY-TETRAHYDRO-FURAN-2- HETNAM 3 PMT YLMETHOXY]-HYDROXY-PHOSPHORYLOXY}-3-OXO- HETNAM 4 PMT PROPYLCARBAMOYL)-3-HYDROXY-2,2- DIMETHYL-PROPYL] ESTER HETSYN PMT 4'-PHOSPHOPANTOTHENOYL- CYTIDINE-5'-MONOPHOSPHATE FORMUL 3 PMT 2(C18 H30 N4 O15 P2) FORMUL 5 HOH *511(H2 O) HELIX 1 AA1 GLU A 41 ASN A 47 1 7 HELIX 2 AA2 TYR A 52 LEU A 70 1 19 HELIX 3 AA3 GLY A 101 ASN A 114 1 14 HELIX 4 AA4 ASN A 131 HIS A 136 1 6 HELIX 5 AA5 LEU A 141 ILE A 146 5 6 HELIX 6 AA6 LYS A 153 GLU A 172 1 20 HELIX 7 AA7 THR A 184 LYS A 197 1 14 HELIX 8 AA8 LEU A 198 ASN A 200 5 3 HELIX 9 AA9 PRO A 218 LEU A 222 5 5 HELIX 10 AB1 LYS A 262 SER A 270 1 9 HELIX 11 AB2 ASP A 285 ASN A 301 1 17 HELIX 12 AB3 GLN A 311 ARG A 313 5 3 HELIX 13 AB4 ILE A 339 THR A 360 1 22 HELIX 14 AB5 GLU B 41 ASN B 47 1 7 HELIX 15 AB6 TYR B 52 LEU B 70 1 19 HELIX 16 AB7 GLY B 101 ASN B 114 1 14 HELIX 17 AB8 ASN B 131 HIS B 136 1 6 HELIX 18 AB9 LEU B 141 ILE B 146 5 6 HELIX 19 AC1 LYS B 153 GLU B 172 1 20 HELIX 20 AC2 THR B 184 LYS B 197 1 14 HELIX 21 AC3 PRO B 218 LEU B 222 5 5 HELIX 22 AC4 LYS B 262 SER B 270 1 9 HELIX 23 AC5 ASP B 285 SER B 287 5 3 HELIX 24 AC6 MET B 288 ASN B 301 1 14 HELIX 25 AC7 GLN B 311 ARG B 313 5 3 HELIX 26 AC8 SER B 338 LYS B 359 1 22 SHEET 1 AA1 8 LEU A 177 PHE A 182 0 SHEET 2 AA1 8 SER A 117 ARG A 123 1 N PHE A 120 O LEU A 178 SHEET 3 AA1 8 ILE A 75 SER A 80 1 N ILE A 78 O ILE A 119 SHEET 4 AA1 8 CYS A 204 LEU A 208 1 O TYR A 207 N LEU A 77 SHEET 5 AA1 8 MET A 276 GLU A 283 1 O VAL A 278 N PHE A 206 SHEET 6 AA1 8 LEU A 304 LEU A 309 1 O ILE A 306 N SER A 279 SHEET 7 AA1 8 GLN A 316 SER A 321 -1 O ILE A 318 N GLY A 307 SHEET 8 AA1 8 ASN A 324 ARG A 331 -1 O VAL A 330 N VAL A 317 SHEET 1 AA2 4 THR A 84 PRO A 86 0 SHEET 2 AA2 4 ARG A 93 ASN A 97 -1 O ILE A 95 N VAL A 85 SHEET 3 AA2 4 ARG B 93 ASN B 97 -1 O ASP B 96 N PHE A 94 SHEET 4 AA2 4 THR B 84 PRO B 86 -1 N VAL B 85 O ILE B 95 SHEET 1 AA3 4 PHE A 215 PHE A 216 0 SHEET 2 AA3 4 LEU A 253 PRO A 259 -1 O ASP A 258 N PHE A 216 SHEET 3 AA3 4 LEU B 253 PRO B 259 -1 O VAL B 255 N VAL A 255 SHEET 4 AA3 4 PHE B 215 PHE B 216 -1 N PHE B 216 O ASP B 258 SHEET 1 AA4 4 ARG A 246 THR A 247 0 SHEET 2 AA4 4 LEU A 253 PRO A 259 -1 O ILE A 254 N ARG A 246 SHEET 3 AA4 4 LEU B 253 PRO B 259 -1 O VAL B 255 N VAL A 255 SHEET 4 AA4 4 ARG B 246 THR B 247 -1 N ARG B 246 O ILE B 254 SHEET 1 AA5 8 LEU B 177 PHE B 182 0 SHEET 2 AA5 8 SER B 117 ARG B 123 1 N PHE B 120 O LEU B 178 SHEET 3 AA5 8 ILE B 75 SER B 80 1 N ILE B 78 O ILE B 119 SHEET 4 AA5 8 CYS B 204 LEU B 208 1 O LEU B 205 N LEU B 77 SHEET 5 AA5 8 MET B 276 GLU B 283 1 O VAL B 278 N PHE B 206 SHEET 6 AA5 8 LEU B 304 LEU B 309 1 O ILE B 306 N SER B 279 SHEET 7 AA5 8 GLN B 316 SER B 321 -1 O VAL B 320 N VAL B 305 SHEET 8 AA5 8 ASN B 324 ARG B 331 -1 O VAL B 330 N VAL B 317 SITE 1 AC1 19 SER A 99 ALA A 100 GLY A 101 THR A 102 SITE 2 AC1 19 ARG A 103 ALA A 209 ALA A 210 ASP A 214 SITE 3 AC1 19 PHE A 280 LYS A 281 LEU A 282 TYR A 300 SITE 4 AC1 19 ASN A 308 ARG A 313 HOH A 508 HOH A 534 SITE 5 AC1 19 HOH A 537 HOH A 627 HOH A 656 SITE 1 AC2 24 SER B 99 ALA B 100 GLY B 101 THR B 102 SITE 2 AC2 24 ARG B 103 ALA B 209 ALA B 210 VAL B 212 SITE 3 AC2 24 ASP B 214 PHE B 280 LYS B 281 LEU B 282 SITE 4 AC2 24 LYS B 292 GLN B 295 ARG B 299 TYR B 300 SITE 5 AC2 24 ASN B 308 ARG B 313 HOH B 504 HOH B 528 SITE 6 AC2 24 HOH B 585 HOH B 586 HOH B 608 HOH B 612 CRYST1 51.758 112.513 55.831 90.00 91.56 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019321 0.000000 0.000526 0.00000 SCALE2 0.000000 0.008888 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017918 0.00000