HEADER VIRUS 26-AUG-18 6AJ3 TITLE THE STRUCTURE OF ENTEROVIRUS D68 PROCAPSID COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VIRION PROTEIN 1; COMPND 5 EC: 3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CAPSID PROTEIN VP2; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: VIRION PROTEIN 2; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: CAPSID PROTEIN VP3; COMPND 12 CHAIN: C; COMPND 13 SYNONYM: VIRION PROTEIN 3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROVIRUS D68; SOURCE 3 ORGANISM_TAXID: 42789; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ENTEROVIRUS D68; SOURCE 6 ORGANISM_TAXID: 42789; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ENTEROVIRUS D68; SOURCE 9 ORGANISM_TAXID: 42789 KEYWDS ENTEROVIRUS D68, PROCAPSID, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR Q.B.ZHENG,R.ZHU,L.F.XU,M.Z.HE,X.D.YAN,T.CHENG,S.W.LI REVDAT 4 23-MAR-22 6AJ3 1 REMARK REVDAT 3 26-DEC-18 6AJ3 1 JRNL REVDAT 2 21-NOV-18 6AJ3 1 JRNL REVDAT 1 07-NOV-18 6AJ3 0 JRNL AUTH Q.ZHENG,R.ZHU,L.XU,M.HE,X.YAN,D.LIU,Z.YIN,Y.WU,Y.LI,L.YANG, JRNL AUTH 2 W.HOU,S.LI,Z.LI,Z.CHEN,Z.LI,H.YU,Y.GU,J.ZHANG,T.S.BAKER, JRNL AUTH 3 Z.H.ZHOU,B.S.GRAHAM,T.CHENG,S.LI,N.XIA JRNL TITL ATOMIC STRUCTURES OF ENTEROVIRUS D68 IN COMPLEX WITH TWO JRNL TITL 2 MONOCLONAL ANTIBODIES DEFINE DISTINCT MECHANISMS OF VIRAL JRNL TITL 3 NEUTRALIZATION JRNL REF NAT MICROBIOL V. 4 124 2019 JRNL REFN ESSN 2058-5276 JRNL PMID 30397341 JRNL DOI 10.1038/S41564-018-0275-7 REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.800 REMARK 3 NUMBER OF PARTICLES : 13849 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6AJ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1300008859. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ENTEROVIRUS D REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI F30 REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.809017 -0.309017 410.65703 REMARK 350 BIOMT2 2 0.809017 0.309017 0.500000 -156.85702 REMARK 350 BIOMT3 2 -0.309017 -0.500000 0.809017 253.80003 REMARK 350 BIOMT1 3 -0.309017 -0.500000 -0.809017 664.45701 REMARK 350 BIOMT2 3 0.500000 -0.809017 0.309017 253.80002 REMARK 350 BIOMT3 3 -0.809017 -0.309017 0.500000 410.65710 REMARK 350 BIOMT1 4 -0.309017 0.500000 -0.809017 410.65699 REMARK 350 BIOMT2 4 -0.500000 -0.809017 -0.309017 664.45705 REMARK 350 BIOMT3 4 -0.809017 0.309017 0.500000 253.80008 REMARK 350 BIOMT1 5 0.500000 0.809017 -0.309017 -0.00003 REMARK 350 BIOMT2 5 -0.809017 0.309017 -0.500000 507.60001 REMARK 350 BIOMT3 5 -0.309017 0.500000 0.809017 0.00003 REMARK 350 BIOMT1 6 -0.809017 0.309017 -0.500000 507.59999 REMARK 350 BIOMT2 6 0.309017 -0.500000 -0.809017 507.59996 REMARK 350 BIOMT3 6 -0.500000 -0.809017 0.309017 507.60007 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 -0.00003 REMARK 350 BIOMT2 7 0.000000 0.000000 -1.000000 507.59993 REMARK 350 BIOMT3 7 -1.000000 0.000000 0.000000 507.60003 REMARK 350 BIOMT1 8 0.809017 0.309017 0.500000 -156.85702 REMARK 350 BIOMT2 8 0.309017 0.500000 -0.809017 253.79994 REMARK 350 BIOMT3 8 -0.500000 0.809017 0.309017 96.94296 REMARK 350 BIOMT1 9 0.500000 -0.809017 0.309017 253.80004 REMARK 350 BIOMT2 9 0.809017 0.309017 -0.500000 96.94295 REMARK 350 BIOMT3 9 0.309017 0.500000 0.809017 -156.85703 REMARK 350 BIOMT1 10 -0.500000 -0.809017 -0.309017 664.45706 REMARK 350 BIOMT2 10 0.809017 -0.309017 -0.500000 253.79999 REMARK 350 BIOMT3 10 0.309017 -0.500000 0.809017 96.94302 REMARK 350 BIOMT1 11 -0.500000 -0.809017 -0.309017 664.45704 REMARK 350 BIOMT2 11 -0.809017 0.309017 0.500000 253.80007 REMARK 350 BIOMT3 11 -0.309017 0.500000 -0.809017 410.65702 REMARK 350 BIOMT1 12 -0.809017 0.309017 -0.500000 507.60005 REMARK 350 BIOMT2 12 -0.309017 0.500000 0.809017 0.00008 REMARK 350 BIOMT3 12 0.500000 0.809017 -0.309017 -0.00005 REMARK 350 BIOMT1 13 0.000000 1.000000 0.000000 0.00003 REMARK 350 BIOMT2 13 0.000000 0.000000 1.000000 0.00005 REMARK 350 BIOMT3 13 1.000000 0.000000 0.000000 -0.00008 REMARK 350 BIOMT1 14 0.809017 0.309017 0.500000 -156.85704 REMARK 350 BIOMT2 14 -0.309017 -0.500000 0.809017 253.80002 REMARK 350 BIOMT3 14 0.500000 -0.809017 -0.309017 410.65696 REMARK 350 BIOMT1 15 0.500000 -0.809017 0.309017 253.79997 REMARK 350 BIOMT2 15 -0.809017 -0.309017 0.500000 410.65706 REMARK 350 BIOMT3 15 -0.309017 -0.500000 -0.809017 664.45701 REMARK 350 BIOMT1 16 0.309017 0.500000 0.809017 -156.85699 REMARK 350 BIOMT2 16 0.500000 -0.809017 0.309017 253.79999 REMARK 350 BIOMT3 16 0.809017 0.309017 -0.500000 96.94288 REMARK 350 BIOMT1 17 0.309017 -0.500000 0.809017 96.94298 REMARK 350 BIOMT2 17 -0.500000 -0.809017 -0.309017 664.45704 REMARK 350 BIOMT3 17 0.809017 -0.309017 -0.500000 253.79996 REMARK 350 BIOMT1 18 -0.500000 -0.809017 0.309017 507.60002 REMARK 350 BIOMT2 18 -0.809017 0.309017 -0.500000 507.60001 REMARK 350 BIOMT3 18 0.309017 -0.500000 -0.809017 507.59999 REMARK 350 BIOMT1 19 -1.000000 0.000000 0.000000 507.60005 REMARK 350 BIOMT2 19 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 19 0.000000 0.000000 -1.000000 507.59995 REMARK 350 BIOMT1 20 -0.500000 0.809017 0.309017 96.94303 REMARK 350 BIOMT2 20 0.809017 0.309017 0.500000 -156.85704 REMARK 350 BIOMT3 20 0.309017 0.500000 -0.809017 253.79991 REMARK 350 BIOMT1 21 -0.500000 -0.809017 0.309017 507.60008 REMARK 350 BIOMT2 21 0.809017 -0.309017 0.500000 0.00003 REMARK 350 BIOMT3 21 -0.309017 0.500000 0.809017 0.00004 REMARK 350 BIOMT1 22 -1.000000 0.000000 0.000000 507.60005 REMARK 350 BIOMT2 22 0.000000 -1.000000 0.000000 507.60004 REMARK 350 BIOMT3 22 0.000000 0.000000 1.000000 0.00007 REMARK 350 BIOMT1 23 -0.500000 0.809017 0.309017 96.94299 REMARK 350 BIOMT2 23 -0.809017 -0.309017 -0.500000 664.45704 REMARK 350 BIOMT3 23 -0.309017 -0.500000 0.809017 253.80006 REMARK 350 BIOMT1 24 0.309017 0.500000 0.809017 -156.85701 REMARK 350 BIOMT2 24 -0.500000 0.809017 -0.309017 253.79997 REMARK 350 BIOMT3 24 -0.809017 -0.309017 0.500000 410.65705 REMARK 350 BIOMT1 25 0.309017 -0.500000 0.809017 96.94303 REMARK 350 BIOMT2 25 0.500000 0.809017 0.309017 -156.85704 REMARK 350 BIOMT3 25 -0.809017 0.309017 0.500000 253.80001 REMARK 350 BIOMT1 26 0.000000 0.000000 1.000000 0.00002 REMARK 350 BIOMT2 26 -1.000000 0.000000 0.000000 507.60001 REMARK 350 BIOMT3 26 0.000000 -1.000000 0.000000 507.60000 REMARK 350 BIOMT1 27 -0.309017 -0.500000 0.809017 253.80004 REMARK 350 BIOMT2 27 -0.500000 0.809017 0.309017 96.94298 REMARK 350 BIOMT3 27 -0.809017 -0.309017 -0.500000 664.45702 REMARK 350 BIOMT1 28 -0.809017 -0.309017 0.500000 410.65711 REMARK 350 BIOMT2 28 0.309017 0.500000 0.809017 -156.85699 REMARK 350 BIOMT3 28 -0.500000 0.809017 -0.309017 253.79998 REMARK 350 BIOMT1 29 -0.809017 0.309017 0.500000 253.80010 REMARK 350 BIOMT2 29 0.309017 -0.500000 0.809017 96.94303 REMARK 350 BIOMT3 29 0.500000 0.809017 0.309017 -156.85706 REMARK 350 BIOMT1 30 -0.309017 0.500000 0.809017 0.00005 REMARK 350 BIOMT2 30 -0.500000 -0.809017 0.309017 507.60005 REMARK 350 BIOMT3 30 0.809017 -0.309017 0.500000 -0.00002 REMARK 350 BIOMT1 31 0.809017 0.309017 -0.500000 96.94290 REMARK 350 BIOMT2 31 -0.309017 -0.500000 -0.809017 664.45700 REMARK 350 BIOMT3 31 -0.500000 0.809017 -0.309017 253.80001 REMARK 350 BIOMT1 32 0.809017 -0.309017 -0.500000 253.79998 REMARK 350 BIOMT2 32 -0.309017 0.500000 -0.809017 410.65703 REMARK 350 BIOMT3 32 0.500000 0.809017 0.309017 -156.85704 REMARK 350 BIOMT1 33 0.309017 -0.500000 -0.809017 507.60000 REMARK 350 BIOMT2 33 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 33 0.809017 -0.309017 0.500000 -0.00002 REMARK 350 BIOMT1 34 0.000000 0.000000 -1.000000 507.59997 REMARK 350 BIOMT2 34 1.000000 0.000000 0.000000 -0.00003 REMARK 350 BIOMT3 34 0.000000 -1.000000 0.000000 507.60000 REMARK 350 BIOMT1 35 0.309017 0.500000 -0.809017 253.79992 REMARK 350 BIOMT2 35 0.500000 -0.809017 -0.309017 410.65698 REMARK 350 BIOMT3 35 -0.809017 -0.309017 -0.500000 664.45704 REMARK 350 BIOMT1 36 -0.309017 0.500000 -0.809017 410.65703 REMARK 350 BIOMT2 36 0.500000 0.809017 0.309017 -156.85702 REMARK 350 BIOMT3 36 0.809017 -0.309017 -0.500000 253.79993 REMARK 350 BIOMT1 37 0.500000 0.809017 -0.309017 -0.00003 REMARK 350 BIOMT2 37 0.809017 -0.309017 0.500000 -0.00003 REMARK 350 BIOMT3 37 0.309017 -0.500000 -0.809017 507.59992 REMARK 350 BIOMT1 38 1.000000 0.000000 0.000000 -0.00006 REMARK 350 BIOMT2 38 0.000000 -1.000000 0.000000 507.59998 REMARK 350 BIOMT3 38 0.000000 0.000000 -1.000000 507.59995 REMARK 350 BIOMT1 39 0.500000 -0.809017 -0.309017 410.65699 REMARK 350 BIOMT2 39 -0.809017 -0.309017 -0.500000 664.45705 REMARK 350 BIOMT3 39 0.309017 0.500000 -0.809017 253.79998 REMARK 350 BIOMT1 40 -0.309017 -0.500000 -0.809017 664.45703 REMARK 350 BIOMT2 40 -0.500000 0.809017 -0.309017 253.80004 REMARK 350 BIOMT3 40 0.809017 0.309017 -0.500000 96.94294 REMARK 350 BIOMT1 41 -0.500000 0.809017 -0.309017 253.80003 REMARK 350 BIOMT2 41 -0.809017 -0.309017 0.500000 410.65711 REMARK 350 BIOMT3 41 0.309017 0.500000 0.809017 -156.85701 REMARK 350 BIOMT1 42 0.500000 0.809017 0.309017 -156.85702 REMARK 350 BIOMT2 42 -0.809017 0.309017 0.500000 253.80004 REMARK 350 BIOMT3 42 0.309017 -0.500000 0.809017 96.94296 REMARK 350 BIOMT1 43 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 43 -0.309017 0.500000 0.809017 0.00002 REMARK 350 BIOMT3 43 -0.500000 -0.809017 0.309017 507.60000 REMARK 350 BIOMT1 44 0.000000 -1.000000 0.000000 507.60001 REMARK 350 BIOMT2 44 0.000000 0.000000 1.000000 0.00005 REMARK 350 BIOMT3 44 -1.000000 0.000000 0.000000 507.60004 REMARK 350 BIOMT1 45 -0.809017 -0.309017 -0.500000 664.45706 REMARK 350 BIOMT2 45 -0.309017 -0.500000 0.809017 253.80009 REMARK 350 BIOMT3 45 -0.500000 0.809017 0.309017 96.94302 REMARK 350 BIOMT1 46 0.809017 -0.309017 -0.500000 253.79994 REMARK 350 BIOMT2 46 0.309017 -0.500000 0.809017 96.94298 REMARK 350 BIOMT3 46 -0.500000 -0.809017 -0.309017 664.45702 REMARK 350 BIOMT1 47 0.309017 -0.500000 -0.809017 507.59994 REMARK 350 BIOMT2 47 -0.500000 -0.809017 0.309017 507.60004 REMARK 350 BIOMT3 47 -0.809017 0.309017 -0.500000 507.60004 REMARK 350 BIOMT1 48 0.000000 0.000000 -1.000000 507.59997 REMARK 350 BIOMT2 48 -1.000000 0.000000 0.000000 507.60008 REMARK 350 BIOMT3 48 0.000000 1.000000 0.000000 0.00002 REMARK 350 BIOMT1 49 0.309017 0.500000 -0.809017 253.79999 REMARK 350 BIOMT2 49 -0.500000 0.809017 0.309017 96.94303 REMARK 350 BIOMT3 49 0.809017 0.309017 0.500000 -156.85706 REMARK 350 BIOMT1 50 0.809017 0.309017 -0.500000 96.94295 REMARK 350 BIOMT2 50 0.309017 0.500000 0.809017 -156.85701 REMARK 350 BIOMT3 50 0.500000 -0.809017 0.309017 253.79996 REMARK 350 BIOMT1 51 -0.309017 0.500000 0.809017 0.00005 REMARK 350 BIOMT2 51 0.500000 0.809017 -0.309017 -0.00006 REMARK 350 BIOMT3 51 -0.809017 0.309017 -0.500000 507.59997 REMARK 350 BIOMT1 52 0.000000 0.000000 1.000000 0.00008 REMARK 350 BIOMT2 52 1.000000 0.000000 0.000000 -0.00003 REMARK 350 BIOMT3 52 0.000000 1.000000 0.000000 -0.00005 REMARK 350 BIOMT1 53 -0.309017 -0.500000 0.809017 253.80008 REMARK 350 BIOMT2 53 0.500000 -0.809017 -0.309017 410.65703 REMARK 350 BIOMT3 53 0.809017 0.309017 0.500000 -156.85704 REMARK 350 BIOMT1 54 -0.809017 -0.309017 0.500000 410.65707 REMARK 350 BIOMT2 54 -0.309017 -0.500000 -0.809017 664.45702 REMARK 350 BIOMT3 54 0.500000 -0.809017 0.309017 253.80003 REMARK 350 BIOMT1 55 -0.809017 0.309017 0.500000 253.80002 REMARK 350 BIOMT2 55 -0.309017 0.500000 -0.809017 410.65698 REMARK 350 BIOMT3 55 -0.500000 -0.809017 -0.309017 664.45704 REMARK 350 BIOMT1 56 0.000000 -1.000000 0.000000 507.60002 REMARK 350 BIOMT2 56 0.000000 0.000000 -1.000000 507.59999 REMARK 350 BIOMT3 56 1.000000 0.000000 0.000000 -0.00001 REMARK 350 BIOMT1 57 -0.809017 -0.309017 -0.500000 664.45704 REMARK 350 BIOMT2 57 0.309017 0.500000 -0.809017 253.79997 REMARK 350 BIOMT3 57 0.500000 -0.809017 -0.309017 410.65702 REMARK 350 BIOMT1 58 -0.500000 0.809017 -0.309017 253.79999 REMARK 350 BIOMT2 58 0.809017 0.309017 -0.500000 96.94290 REMARK 350 BIOMT3 58 -0.309017 -0.500000 -0.809017 664.45699 REMARK 350 BIOMT1 59 0.500000 0.809017 0.309017 -156.85704 REMARK 350 BIOMT2 59 0.809017 -0.309017 -0.500000 253.79992 REMARK 350 BIOMT3 59 -0.309017 0.500000 -0.809017 410.65697 REMARK 350 BIOMT1 60 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 60 0.309017 -0.500000 -0.809017 507.59996 REMARK 350 BIOMT3 60 0.500000 0.809017 -0.309017 -0.00005 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 GLU A 2 REMARK 465 SER A 3 REMARK 465 ILE A 4 REMARK 465 ILE A 5 REMARK 465 LYS A 6 REMARK 465 THR A 7 REMARK 465 ALA A 8 REMARK 465 THR A 9 REMARK 465 ASP A 10 REMARK 465 THR A 11 REMARK 465 VAL A 12 REMARK 465 LYS A 13 REMARK 465 SER A 14 REMARK 465 GLU A 15 REMARK 465 ILE A 16 REMARK 465 ASN A 17 REMARK 465 ALA A 18 REMARK 465 GLU A 19 REMARK 465 LEU A 20 REMARK 465 GLY A 21 REMARK 465 VAL A 22 REMARK 465 VAL A 23 REMARK 465 PRO A 24 REMARK 465 SER A 25 REMARK 465 LEU A 26 REMARK 465 ASN A 27 REMARK 465 ALA A 28 REMARK 465 VAL A 29 REMARK 465 GLU A 30 REMARK 465 THR A 31 REMARK 465 GLY A 32 REMARK 465 ALA A 33 REMARK 465 THR A 34 REMARK 465 SER A 35 REMARK 465 ASN A 36 REMARK 465 THR A 37 REMARK 465 GLU A 38 REMARK 465 PRO A 39 REMARK 465 GLU A 40 REMARK 465 GLU A 41 REMARK 465 ALA A 42 REMARK 465 ILE A 43 REMARK 465 GLN A 44 REMARK 465 THR A 45 REMARK 465 ARG A 46 REMARK 465 THR A 47 REMARK 465 VAL A 48 REMARK 465 ILE A 49 REMARK 465 ASN A 50 REMARK 465 GLN A 51 REMARK 465 HIS A 52 REMARK 465 GLY A 53 REMARK 465 LYS A 77 REMARK 465 ASP A 78 REMARK 465 HIS A 79 REMARK 465 THR A 80 REMARK 465 SER A 81 REMARK 465 SER A 82 REMARK 465 ALA A 83 REMARK 465 ALA A 84 REMARK 465 GLN A 85 REMARK 465 ALA A 86 REMARK 465 ASP A 87 REMARK 465 VAL A 127 REMARK 465 ASN A 128 REMARK 465 GLY A 129 REMARK 465 SER A 130 REMARK 465 GLY A 131 REMARK 465 ASN A 132 REMARK 465 ASN A 133 REMARK 465 THR A 134 REMARK 465 TYR A 135 REMARK 465 VAL A 136 REMARK 465 GLY A 137 REMARK 465 LEU A 138 REMARK 465 GLU A 204 REMARK 465 LYS A 205 REMARK 465 ASN A 206 REMARK 465 GLY A 207 REMARK 465 LYS A 268 REMARK 465 GLY A 269 REMARK 465 LYS A 270 REMARK 465 GLU A 271 REMARK 465 ARG A 272 REMARK 465 ALA A 273 REMARK 465 PRO A 274 REMARK 465 ASN A 275 REMARK 465 ALA A 276 REMARK 465 LEU A 277 REMARK 465 ASN A 278 REMARK 465 ALA A 279 REMARK 465 ILE A 280 REMARK 465 ILE A 281 REMARK 465 GLY A 282 REMARK 465 ASN A 283 REMARK 465 ARG A 284 REMARK 465 ASP A 285 REMARK 465 SER A 286 REMARK 465 VAL A 287 REMARK 465 LYS A 288 REMARK 465 THR A 289 REMARK 465 MET A 290 REMARK 465 PRO A 291 REMARK 465 HIS A 292 REMARK 465 ASN A 293 REMARK 465 ILE A 294 REMARK 465 VAL A 295 REMARK 465 SER B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 ALA B 4 REMARK 465 GLU B 5 REMARK 465 ALA B 6 REMARK 465 CYS B 7 REMARK 465 GLY B 8 REMARK 465 TYR B 9 REMARK 465 SER B 10 REMARK 465 ASP B 11 REMARK 465 ARG B 12 REMARK 465 VAL B 13 REMARK 465 LEU B 14 REMARK 465 GLN B 15 REMARK 465 LEU B 16 REMARK 465 LYS B 17 REMARK 465 LEU B 18 REMARK 465 GLY B 19 REMARK 465 ASN B 20 REMARK 465 SER B 21 REMARK 465 ALA B 22 REMARK 465 ILE B 23 REMARK 465 VAL B 24 REMARK 465 THR B 25 REMARK 465 GLN B 26 REMARK 465 GLU B 27 REMARK 465 ALA B 28 REMARK 465 ALA B 29 REMARK 465 ASN B 30 REMARK 465 TYR B 31 REMARK 465 CYS B 32 REMARK 465 CYS B 33 REMARK 465 ALA B 34 REMARK 465 TYR B 35 REMARK 465 GLY B 36 REMARK 465 GLU B 37 REMARK 465 TRP B 38 REMARK 465 PRO B 39 REMARK 465 ASN B 40 REMARK 465 TYR B 41 REMARK 465 LEU B 42 REMARK 465 PRO B 43 REMARK 465 ASP B 44 REMARK 465 HIS B 45 REMARK 465 GLU B 46 REMARK 465 ALA B 47 REMARK 465 VAL B 48 REMARK 465 ALA B 49 REMARK 465 ILE B 50 REMARK 465 ASP B 51 REMARK 465 LYS B 52 REMARK 465 PRO B 53 REMARK 465 THR B 54 REMARK 465 GLN B 55 REMARK 465 PRO B 56 REMARK 465 GLU B 57 REMARK 465 THR B 58 REMARK 465 ALA B 59 REMARK 465 THR B 60 REMARK 465 ASP B 61 REMARK 465 ARG B 62 REMARK 465 GLY B 93 REMARK 465 GLN B 94 REMARK 465 ASN B 95 REMARK 465 VAL B 96 REMARK 465 GLN B 97 REMARK 465 HIS B 98 REMARK 465 HIS B 99 REMARK 465 TYR B 100 REMARK 465 LEU B 101 REMARK 465 TYR B 102 REMARK 465 PHE B 239 REMARK 465 ASN B 240 REMARK 465 GLY B 241 REMARK 465 LEU B 242 REMARK 465 ARG B 243 REMARK 465 HIS B 244 REMARK 465 ALA B 245 REMARK 465 ILE B 246 REMARK 465 THR B 247 REMARK 465 GLN B 248 REMARK 465 TYR C 175 REMARK 465 ARG C 176 REMARK 465 MET C 177 REMARK 465 PHE C 178 REMARK 465 ASN C 179 REMARK 465 ASN C 180 REMARK 465 ASP C 181 REMARK 465 ALA C 182 REMARK 465 LYS C 183 REMARK 465 SER C 184 REMARK 465 THR C 185 REMARK 465 ASN C 186 REMARK 465 ALA C 187 REMARK 465 ASN C 188 REMARK 465 GLN C 235 REMARK 465 LEU C 236 REMARK 465 ASP C 237 REMARK 465 HIS C 238 REMARK 465 LEU C 239 REMARK 465 HIS C 240 REMARK 465 ALA C 241 REMARK 465 ALA C 242 REMARK 465 GLU C 243 REMARK 465 ALA C 244 REMARK 465 ALA C 245 REMARK 465 TYR C 246 REMARK 465 GLN C 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 91 N - CA - C ANGL. DEV. = 20.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 64 41.17 -104.17 REMARK 500 ALA A 250 79.83 54.79 REMARK 500 GLU B 72 -169.47 -124.09 REMARK 500 GLU B 150 -11.39 72.12 REMARK 500 ASP B 162 16.20 59.84 REMARK 500 ASP B 163 -2.19 -140.94 REMARK 500 ASN B 184 45.69 -141.05 REMARK 500 VAL B 226 71.72 35.54 REMARK 500 ASN C 96 56.81 -98.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-9632 RELATED DB: EMDB REMARK 900 THE STRUCTURE OF ENTEROVIRUS D68 PROCAPSID DBREF1 6AJ3 A 1 295 UNP A0A097F8Q2_9ENTO DBREF2 6AJ3 A A0A097F8Q2 565 859 DBREF1 6AJ3 B 1 248 UNP A0A0A7X639_9ENTO DBREF2 6AJ3 B A0A0A7X639 70 317 DBREF 6AJ3 C 1 247 PDB 6AJ3 6AJ3 1 247 SEQRES 1 A 295 ILE GLU SER ILE ILE LYS THR ALA THR ASP THR VAL LYS SEQRES 2 A 295 SER GLU ILE ASN ALA GLU LEU GLY VAL VAL PRO SER LEU SEQRES 3 A 295 ASN ALA VAL GLU THR GLY ALA THR SER ASN THR GLU PRO SEQRES 4 A 295 GLU GLU ALA ILE GLN THR ARG THR VAL ILE ASN GLN HIS SEQRES 5 A 295 GLY VAL SER GLU THR LEU VAL GLU ASN PHE LEU SER ARG SEQRES 6 A 295 ALA ALA LEU VAL SER LYS ARG SER PHE GLU TYR LYS ASP SEQRES 7 A 295 HIS THR SER SER ALA ALA GLN ALA ASP LYS ASN PHE PHE SEQRES 8 A 295 LYS TRP THR ILE ASN THR ARG SER PHE VAL GLN LEU ARG SEQRES 9 A 295 ARG LYS LEU GLU LEU PHE THR TYR LEU ARG PHE ASP ALA SEQRES 10 A 295 GLU ILE THR ILE LEU THR THR VAL ALA VAL ASN GLY SER SEQRES 11 A 295 GLY ASN ASN THR TYR VAL GLY LEU PRO ASP LEU THR LEU SEQRES 12 A 295 GLN ALA MET PHE VAL PRO THR GLY ALA LEU THR PRO GLU SEQRES 13 A 295 LYS GLN ASP SER PHE HIS TRP GLN SER GLY SER ASN ALA SEQRES 14 A 295 SER VAL PHE PHE LYS ILE SER ASP PRO PRO ALA ARG ILE SEQRES 15 A 295 THR ILE PRO PHE MET CYS ILE ASN SER ALA TYR SER VAL SEQRES 16 A 295 PHE TYR ASP GLY PHE ALA GLY PHE GLU LYS ASN GLY LEU SEQRES 17 A 295 TYR GLY ILE ASN PRO ALA ASP THR ILE GLY ASN LEU CYS SEQRES 18 A 295 VAL ARG ILE VAL ASN GLU HIS GLN PRO VAL GLY PHE THR SEQRES 19 A 295 VAL THR VAL ARG VAL TYR MET LYS PRO LYS HIS ILE LYS SEQRES 20 A 295 ALA TRP ALA PRO ARG PRO PRO ARG THR LEU PRO TYR MET SEQRES 21 A 295 SER ILE ALA ASN ALA ASN TYR LYS GLY LYS GLU ARG ALA SEQRES 22 A 295 PRO ASN ALA LEU ASN ALA ILE ILE GLY ASN ARG ASP SER SEQRES 23 A 295 VAL LYS THR MET PRO HIS ASN ILE VAL SEQRES 1 B 248 SER PRO SER ALA GLU ALA CYS GLY TYR SER ASP ARG VAL SEQRES 2 B 248 LEU GLN LEU LYS LEU GLY ASN SER ALA ILE VAL THR GLN SEQRES 3 B 248 GLU ALA ALA ASN TYR CYS CYS ALA TYR GLY GLU TRP PRO SEQRES 4 B 248 ASN TYR LEU PRO ASP HIS GLU ALA VAL ALA ILE ASP LYS SEQRES 5 B 248 PRO THR GLN PRO GLU THR ALA THR ASP ARG PHE TYR THR SEQRES 6 B 248 LEU LYS SER VAL LYS TRP GLU THR GLY SER THR GLY TRP SEQRES 7 B 248 TRP TRP LYS LEU PRO ASP ALA LEU ASN ASN ILE GLY MET SEQRES 8 B 248 PHE GLY GLN ASN VAL GLN HIS HIS TYR LEU TYR ARG SER SEQRES 9 B 248 GLY PHE LEU ILE HIS VAL GLN CYS ASN ALA THR LYS PHE SEQRES 10 B 248 HIS GLN GLY ALA LEU LEU VAL VAL ALA ILE PRO GLU HIS SEQRES 11 B 248 GLN ARG GLY ALA HIS ASN THR ASN THR SER PRO GLY PHE SEQRES 12 B 248 ASP ASP ILE MET LYS GLY GLU GLU GLY GLY THR PHE ASN SEQRES 13 B 248 HIS PRO TYR VAL LEU ASP ASP GLY THR SER LEU ALA CYS SEQRES 14 B 248 ALA THR ILE PHE PRO HIS GLN TRP ILE ASN LEU ARG THR SEQRES 15 B 248 ASN ASN SER ALA THR ILE VAL LEU PRO TRP MET ASN ALA SEQRES 16 B 248 ALA PRO MET ASP PHE PRO LEU ARG HIS ASN GLN TRP THR SEQRES 17 B 248 LEU ALA ILE ILE PRO VAL VAL PRO LEU GLY THR ARG THR SEQRES 18 B 248 THR SER SER MET VAL PRO ILE THR VAL SER ILE ALA PRO SEQRES 19 B 248 MET CYS CYS GLU PHE ASN GLY LEU ARG HIS ALA ILE THR SEQRES 20 B 248 GLN SEQRES 1 C 247 GLY VAL PRO THR TYR LEU LEU PRO GLY SER GLY GLN PHE SEQRES 2 C 247 LEU THR THR ASP ASP HIS SER SER ALA PRO ALA LEU PRO SEQRES 3 C 247 CYS PHE ASN PRO THR PRO GLU MET HIS ILE PRO GLY GLN SEQRES 4 C 247 VAL ARG ASN MET LEU GLU VAL VAL GLN VAL GLU SER MET SEQRES 5 C 247 MET GLU ILE ASN ASN THR GLU SER ALA VAL GLY MET GLU SEQRES 6 C 247 ARG LEU LYS VAL ASP ILE SER ALA LEU THR ASP VAL ASP SEQRES 7 C 247 GLN LEU LEU PHE ASN ILE PRO LEU ASP ILE GLN LEU ASP SEQRES 8 C 247 GLY PRO LEU ARG ASN THR LEU VAL GLY ASN ILE SER ARG SEQRES 9 C 247 TYR TYR THR HIS TRP SER GLY SER LEU GLU MET THR PHE SEQRES 10 C 247 MET PHE CYS GLY SER PHE MET ALA THR GLY LYS LEU ILE SEQRES 11 C 247 LEU CYS TYR THR PRO PRO GLY GLY SER CYS PRO THR THR SEQRES 12 C 247 ARG GLU THR ALA MET LEU GLY THR HIS ILE VAL TRP ASP SEQRES 13 C 247 PHE GLY LEU GLN SER SER VAL THR LEU ILE ILE PRO TRP SEQRES 14 C 247 ILE SER GLY SER HIS TYR ARG MET PHE ASN ASN ASP ALA SEQRES 15 C 247 LYS SER THR ASN ALA ASN VAL GLY TYR VAL THR CYS PHE SEQRES 16 C 247 MET GLN THR ASN LEU ILE VAL PRO SER GLU SER SER ASP SEQRES 17 C 247 THR CYS SER LEU ILE GLY PHE ILE ALA ALA LYS ASP ASP SEQRES 18 C 247 PHE SER LEU ARG LEU MET ARG ASP SER PRO ASP ILE GLY SEQRES 19 C 247 GLN LEU ASP HIS LEU HIS ALA ALA GLU ALA ALA TYR GLN HELIX 1 AA1 LEU A 58 LEU A 63 1 6 HELIX 2 AA2 PHE A 100 GLU A 108 1 9 HELIX 3 AA3 LEU B 82 LEU B 86 1 5 HELIX 4 AA4 GLY B 142 MET B 147 1 6 HELIX 5 AA5 HIS B 157 LEU B 161 5 5 HELIX 6 AA6 CYS B 169 PHE B 173 5 5 HELIX 7 AA7 MET C 43 GLN C 48 1 6 HELIX 8 AA8 THR C 97 SER C 103 1 7 HELIX 9 AA9 THR C 143 MET C 148 1 6 SHEET 1 AA1 4 ALA A 67 LYS A 71 0 SHEET 2 AA1 4 VAL A 235 MET A 241 -1 O VAL A 239 N VAL A 69 SHEET 3 AA1 4 ILE A 119 VAL A 125 -1 N LEU A 122 O ARG A 238 SHEET 4 AA1 4 ALA A 180 ILE A 182 -1 O ILE A 182 N ILE A 119 SHEET 1 AA2 4 PHE A 91 THR A 94 0 SHEET 2 AA2 4 GLY A 218 ILE A 224 -1 O VAL A 222 N PHE A 91 SHEET 3 AA2 4 THR A 142 PRO A 149 -1 N MET A 146 O CYS A 221 SHEET 4 AA2 4 SER A 170 LYS A 174 -1 O PHE A 173 N LEU A 143 SHEET 1 AA3 4 TYR A 193 SER A 194 0 SHEET 2 AA3 4 PHE A 110 ASP A 116 -1 N LEU A 113 O TYR A 193 SHEET 3 AA3 4 LYS A 244 PRO A 251 -1 O TRP A 249 N THR A 111 SHEET 4 AA3 4 GLN C 39 VAL C 40 -1 O VAL C 40 N ALA A 248 SHEET 1 AA4 4 TYR B 64 THR B 65 0 SHEET 2 AA4 4 ILE B 228 ALA B 233 -1 O ILE B 232 N TYR B 64 SHEET 3 AA4 4 PHE B 106 CYS B 112 -1 N HIS B 109 O SER B 231 SHEET 4 AA4 4 SER B 185 LEU B 190 -1 O LEU B 190 N PHE B 106 SHEET 1 AA5 4 TRP B 78 LYS B 81 0 SHEET 2 AA5 4 TRP B 207 ILE B 211 -1 O LEU B 209 N TRP B 80 SHEET 3 AA5 4 VAL B 124 PRO B 128 -1 N VAL B 125 O ALA B 210 SHEET 4 AA5 4 HIS B 175 GLN B 176 -1 O GLN B 176 N VAL B 124 SHEET 1 AA6 3 SER C 51 MET C 52 0 SHEET 2 AA6 3 CYS C 210 ALA C 218 -1 O ILE C 216 N SER C 51 SHEET 3 AA6 3 VAL C 69 ILE C 71 -1 N ILE C 71 O CYS C 210 SHEET 1 AA7 4 SER C 51 MET C 52 0 SHEET 2 AA7 4 CYS C 210 ALA C 218 -1 O ILE C 216 N SER C 51 SHEET 3 AA7 4 LEU C 113 PHE C 119 -1 N THR C 116 O PHE C 215 SHEET 4 AA7 4 SER C 162 ILE C 166 -1 O LEU C 165 N MET C 115 SHEET 1 AA8 4 ASN C 83 PRO C 85 0 SHEET 2 AA8 4 TYR C 191 MET C 196 -1 O VAL C 192 N ILE C 84 SHEET 3 AA8 4 GLY C 127 THR C 134 -1 N CYS C 132 O THR C 193 SHEET 4 AA8 4 THR C 151 PHE C 157 -1 O TRP C 155 N LEU C 129 SHEET 1 AA9 2 TRP C 109 SER C 110 0 SHEET 2 AA9 2 SER C 223 LEU C 224 -1 O SER C 223 N SER C 110 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004818 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004433 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005541 0.00000