HEADER MEMBRANE PROTEIN, HYDROLASE 27-AUG-18 6AJH TITLE CRYSTAL STRUCTURE OF MYCOLIC ACID TRANSPORTER MMPL3 FROM MYCOBACTERIUM TITLE 2 SMEGMATIS COMPLEXED WITH AU1235 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DRUG EXPORTERS OF THE RND SUPERFAMILY-LIKE PROTEIN, COMPND 3 ENDOLYSIN; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: MMPL3 TRANSPORTER,LYSIS PROTEIN,LYSOZYME,MURAMIDASE; COMPND 6 EC: 3.2.1.17; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS (STRAIN ATCC 700084 / SOURCE 3 MC(2)155), ENTEROBACTERIA PHAGE T4; SOURCE 4 ORGANISM_COMMON: BACTERIOPHAGE T4; SOURCE 5 ORGANISM_TAXID: 246196, 10665; SOURCE 6 STRAIN: ATCC 700084 / MC(2)155; SOURCE 7 GENE: MMPL3, MSMEI_0243, E, T4TP126; SOURCE 8 EXPRESSION_SYSTEM: MYCOBACTERIUM SMEGMATIS STR. MC2 155; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 246196 KEYWDS MEMBRANE PROTEIN, TRANSPORTER, RND FAMILY, CELL WALL BIOSYNTHESIS, KEYWDS 2 DRUG TARGET, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.ZHANG,J.LI,X.L.YANG,L.J.WU,H.T.YANG,Z.H.RAO REVDAT 3 22-NOV-23 6AJH 1 REMARK REVDAT 2 13-FEB-19 6AJH 1 JRNL REVDAT 1 26-DEC-18 6AJH 0 JRNL AUTH B.ZHANG,J.LI,X.YANG,L.WU,J.ZHANG,Y.YANG,Y.ZHAO,L.ZHANG, JRNL AUTH 2 X.YANG,X.YANG,X.CHENG,Z.LIU,B.JIANG,H.JIANG,L.W.GUDDAT, JRNL AUTH 3 H.YANG,Z.RAO JRNL TITL CRYSTAL STRUCTURES OF MEMBRANE TRANSPORTER MMPL3, AN ANTI-TB JRNL TITL 2 DRUG TARGET. JRNL REF CELL V. 176 636 2019 JRNL REFN ISSN 1097-4172 JRNL PMID 30682372 JRNL DOI 10.1016/J.CELL.2019.01.003 REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 42987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4887 - 6.9422 0.98 2929 138 0.2019 0.1997 REMARK 3 2 6.9422 - 5.5137 1.00 2793 159 0.2203 0.2465 REMARK 3 3 5.5137 - 4.8178 1.00 2772 167 0.1946 0.2138 REMARK 3 4 4.8178 - 4.3777 1.00 2775 141 0.1854 0.2443 REMARK 3 5 4.3777 - 4.0642 1.00 2768 133 0.1956 0.2197 REMARK 3 6 4.0642 - 3.8247 1.00 2756 147 0.2088 0.2211 REMARK 3 7 3.8247 - 3.6333 1.00 2755 142 0.2132 0.2441 REMARK 3 8 3.6333 - 3.4752 1.00 2736 127 0.2311 0.2791 REMARK 3 9 3.4752 - 3.3415 1.00 2753 131 0.2381 0.2693 REMARK 3 10 3.3415 - 3.2262 1.00 2706 159 0.2568 0.3133 REMARK 3 11 3.2262 - 3.1254 1.00 2738 136 0.2688 0.3098 REMARK 3 12 3.1254 - 3.0360 1.00 2746 130 0.2704 0.3371 REMARK 3 13 3.0360 - 2.9561 0.99 2677 139 0.2905 0.3125 REMARK 3 14 2.9561 - 2.8840 1.00 2733 123 0.2948 0.3563 REMARK 3 15 2.8840 - 2.8185 0.84 2233 145 0.3228 0.3797 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7339 REMARK 3 ANGLE : 1.039 9961 REMARK 3 CHIRALITY : 0.032 1134 REMARK 3 PLANARITY : 0.006 1233 REMARK 3 DIHEDRAL : 22.805 2900 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.6379 -5.7075 -31.3711 REMARK 3 T TENSOR REMARK 3 T11: 0.5597 T22: 0.4444 REMARK 3 T33: 0.4401 T12: 0.0455 REMARK 3 T13: -0.0348 T23: 0.0849 REMARK 3 L TENSOR REMARK 3 L11: 1.8922 L22: 0.1136 REMARK 3 L33: 3.1751 L12: -0.0928 REMARK 3 L13: 0.1099 L23: -0.4490 REMARK 3 S TENSOR REMARK 3 S11: 0.3124 S12: 0.5143 S13: -0.0409 REMARK 3 S21: 0.1099 S22: -0.5028 S23: -0.3409 REMARK 3 S31: 0.2675 S32: 0.7698 S33: -0.0040 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.7459 -18.1231 -5.0419 REMARK 3 T TENSOR REMARK 3 T11: 0.3441 T22: 0.3464 REMARK 3 T33: 0.3539 T12: -0.0380 REMARK 3 T13: -0.0076 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.7704 L22: 1.3973 REMARK 3 L33: 2.2906 L12: 0.3163 REMARK 3 L13: -0.6908 L23: -1.1179 REMARK 3 S TENSOR REMARK 3 S11: -0.0834 S12: -0.1413 S13: 0.0090 REMARK 3 S21: -0.1184 S22: -0.0151 S23: 0.0449 REMARK 3 S31: 0.3306 S32: 0.0522 S33: 0.1046 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 436 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2827 3.2455 -16.8777 REMARK 3 T TENSOR REMARK 3 T11: 0.6248 T22: 0.5296 REMARK 3 T33: 0.7930 T12: 0.1649 REMARK 3 T13: 0.0069 T23: 0.1070 REMARK 3 L TENSOR REMARK 3 L11: 0.9961 L22: 1.3115 REMARK 3 L33: 0.7593 L12: 0.3747 REMARK 3 L13: -0.4216 L23: -0.9944 REMARK 3 S TENSOR REMARK 3 S11: 0.1705 S12: 0.2947 S13: 0.4487 REMARK 3 S21: 0.1281 S22: 0.2904 S23: 0.6191 REMARK 3 S31: -0.5179 S32: -0.6164 S33: -0.2067 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 437 THROUGH 716 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3473 -2.5044 4.6770 REMARK 3 T TENSOR REMARK 3 T11: 0.4442 T22: 0.3499 REMARK 3 T33: 0.4019 T12: -0.0268 REMARK 3 T13: 0.0794 T23: -0.0686 REMARK 3 L TENSOR REMARK 3 L11: 1.2921 L22: 1.2019 REMARK 3 L33: 2.2266 L12: -0.1816 REMARK 3 L13: 0.1174 L23: -0.7089 REMARK 3 S TENSOR REMARK 3 S11: 0.0356 S12: -0.2833 S13: 0.2411 REMARK 3 S21: 0.3475 S22: 0.1519 S23: 0.1184 REMARK 3 S31: -0.5472 S32: 0.0796 S33: -0.1515 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 717 THROUGH 760 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9725 22.9200 -29.6287 REMARK 3 T TENSOR REMARK 3 T11: 0.6267 T22: 0.7342 REMARK 3 T33: 0.6811 T12: 0.3557 REMARK 3 T13: -0.0482 T23: 0.3511 REMARK 3 L TENSOR REMARK 3 L11: 0.1409 L22: 0.4263 REMARK 3 L33: 3.4784 L12: 0.0587 REMARK 3 L13: -0.5303 L23: 0.7120 REMARK 3 S TENSOR REMARK 3 S11: 0.2410 S12: -0.2145 S13: -0.3036 REMARK 3 S21: 0.1198 S22: 0.4697 S23: 0.0690 REMARK 3 S31: -0.8543 S32: 0.6080 S33: 0.3057 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 761 THROUGH 929 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.5177 22.5795 -60.2442 REMARK 3 T TENSOR REMARK 3 T11: 0.2501 T22: 0.2973 REMARK 3 T33: 0.3766 T12: 0.0152 REMARK 3 T13: -0.0018 T23: 0.0454 REMARK 3 L TENSOR REMARK 3 L11: 3.4630 L22: 1.7773 REMARK 3 L33: 1.6269 L12: 0.6092 REMARK 3 L13: -0.2498 L23: -0.1283 REMARK 3 S TENSOR REMARK 3 S11: 0.1364 S12: 0.0015 S13: -0.0389 REMARK 3 S21: -0.1105 S22: 0.0259 S23: -0.0952 REMARK 3 S31: -0.0182 S32: -0.0612 S33: -0.1242 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AJH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1300008846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43073 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.95600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6AJF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10%-20% (V/V) POLYETHYLENE GLYCOL REMARK 280 MONOMETHYL ETHER 350 (PEGMME 350), 50 MM ADA (N-(2-ACETAMIDO) REMARK 280 IMINODIACETIC ACID) (PH 6.0-7.0), 7.5%-17.5% (V/V) POLYETHYLENE REMARK 280 GLYCOL 2000 (PEG 2000), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.48350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.10700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.58350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.10700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.48350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 70.58350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 PRO A -11 REMARK 465 GLU A -10 REMARK 465 VAL A -9 REMARK 465 VAL A -8 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 TYR A -5 REMARK 465 LYS A 355 REMARK 465 ILE A 356 REMARK 465 PRO A 357 REMARK 465 PHE A 358 REMARK 465 LEU A 359 REMARK 465 ALA A 360 REMARK 465 ASN A 361 REMARK 465 TRP A 362 REMARK 465 GLN A 363 REMARK 465 PHE A 364 REMARK 465 SER A 365 REMARK 465 ARG A 366 REMARK 465 ARG A 367 REMARK 465 ILE A 368 REMARK 465 ILE A 369 REMARK 465 ASP A 370 REMARK 465 TRP A 371 REMARK 465 PHE A 372 REMARK 465 ALA A 373 REMARK 465 GLU A 374 REMARK 465 LYS A 375 REMARK 465 THR A 376 REMARK 465 GLN A 377 REMARK 465 LYS A 378 REMARK 465 THR A 379 REMARK 465 LYS A 380 REMARK 465 THR A 381 REMARK 465 ARG A 382 REMARK 465 GLU A 383 REMARK 465 GLU A 384 REMARK 465 VAL A 385 REMARK 465 GLU A 386 REMARK 465 ARG A 387 REMARK 465 GLY A 388 REMARK 465 HIS A 930 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 L6T A 1005 O5 MHA A 1009 1.99 REMARK 500 CB ALA A 738 CD LYS A 743 2.03 REMARK 500 NH2 ARG A 653 OAQ L6T A 1004 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 916 N - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 101 52.28 -141.04 REMARK 500 THR A 285 -77.52 -112.91 REMARK 500 THR A 332 -76.12 -124.50 REMARK 500 PRO A 401 -71.19 -48.64 REMARK 500 PRO A 407 7.17 -69.48 REMARK 500 ASP A 491 33.29 -97.30 REMARK 500 THR A 717 -76.06 -129.49 REMARK 500 ARG A 740 -128.62 53.78 REMARK 500 PHE A 863 51.90 -90.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9ZF A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L6T A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L6T A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L6T A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L6T A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L6T A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MHA A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MHA A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MHA A 1009 DBREF 6AJH A 1 748 UNP I7G2R2 I7G2R2_MYCS2 1 748 DBREF 6AJH A 751 910 UNP D9IEF7 D9IEF7_BPT4 2 161 SEQADV 6AJH MET A -12 UNP I7G2R2 EXPRESSION TAG SEQADV 6AJH PRO A -11 UNP I7G2R2 EXPRESSION TAG SEQADV 6AJH GLU A -10 UNP I7G2R2 EXPRESSION TAG SEQADV 6AJH VAL A -9 UNP I7G2R2 EXPRESSION TAG SEQADV 6AJH VAL A -8 UNP I7G2R2 EXPRESSION TAG SEQADV 6AJH GLY A -7 UNP I7G2R2 EXPRESSION TAG SEQADV 6AJH SER A -6 UNP I7G2R2 EXPRESSION TAG SEQADV 6AJH TYR A -5 UNP I7G2R2 EXPRESSION TAG SEQADV 6AJH PHE A -4 UNP I7G2R2 EXPRESSION TAG SEQADV 6AJH GLN A -3 UNP I7G2R2 EXPRESSION TAG SEQADV 6AJH SER A -2 UNP I7G2R2 EXPRESSION TAG SEQADV 6AJH ASN A -1 UNP I7G2R2 EXPRESSION TAG SEQADV 6AJH ALA A 0 UNP I7G2R2 EXPRESSION TAG SEQADV 6AJH GLU A 749 UNP I7G2R2 LINKER SEQADV 6AJH PHE A 750 UNP I7G2R2 LINKER SEQADV 6AJH THR A 803 UNP D9IEF7 CYS 54 ENGINEERED MUTATION SEQADV 6AJH ALA A 846 UNP D9IEF7 CYS 97 ENGINEERED MUTATION SEQADV 6AJH GLU A 911 UNP D9IEF7 EXPRESSION TAG SEQADV 6AJH PHE A 912 UNP D9IEF7 EXPRESSION TAG SEQADV 6AJH HIS A 913 UNP D9IEF7 EXPRESSION TAG SEQADV 6AJH LEU A 914 UNP D9IEF7 EXPRESSION TAG SEQADV 6AJH GLY A 915 UNP D9IEF7 EXPRESSION TAG SEQADV 6AJH GLY A 916 UNP D9IEF7 EXPRESSION TAG SEQADV 6AJH ILE A 917 UNP D9IEF7 EXPRESSION TAG SEQADV 6AJH LYS A 918 UNP D9IEF7 EXPRESSION TAG SEQADV 6AJH ALA A 919 UNP D9IEF7 EXPRESSION TAG SEQADV 6AJH PHE A 920 UNP D9IEF7 EXPRESSION TAG SEQADV 6AJH HIS A 921 UNP D9IEF7 EXPRESSION TAG SEQADV 6AJH HIS A 922 UNP D9IEF7 EXPRESSION TAG SEQADV 6AJH HIS A 923 UNP D9IEF7 EXPRESSION TAG SEQADV 6AJH HIS A 924 UNP D9IEF7 EXPRESSION TAG SEQADV 6AJH HIS A 925 UNP D9IEF7 EXPRESSION TAG SEQADV 6AJH HIS A 926 UNP D9IEF7 EXPRESSION TAG SEQADV 6AJH HIS A 927 UNP D9IEF7 EXPRESSION TAG SEQADV 6AJH HIS A 928 UNP D9IEF7 EXPRESSION TAG SEQADV 6AJH HIS A 929 UNP D9IEF7 EXPRESSION TAG SEQADV 6AJH HIS A 930 UNP D9IEF7 EXPRESSION TAG SEQRES 1 A 943 MET PRO GLU VAL VAL GLY SER TYR PHE GLN SER ASN ALA SEQRES 2 A 943 MET PHE ALA TRP TRP GLY ARG THR VAL TYR GLN PHE ARG SEQRES 3 A 943 TYR ILE VAL ILE GLY VAL MET VAL ALA LEU CYS LEU GLY SEQRES 4 A 943 GLY GLY VAL TYR GLY ILE SER LEU GLY ASN HIS VAL THR SEQRES 5 A 943 GLN SER GLY PHE TYR ASP GLU GLY SER GLN SER VAL ALA SEQRES 6 A 943 ALA SER LEU ILE GLY ASP GLU VAL TYR GLY ARG ASP ARG SEQRES 7 A 943 THR SER HIS VAL VAL ALA ILE LEU THR PRO PRO ASP ASP SEQRES 8 A 943 LYS LYS VAL THR ASP LYS ALA TRP GLN LYS LYS VAL THR SEQRES 9 A 943 GLU GLU LEU ASP GLN VAL VAL LYS ASP HIS GLU ASP GLN SEQRES 10 A 943 ILE VAL GLY TRP VAL GLY TRP LEU LYS ALA PRO ASP THR SEQRES 11 A 943 THR ASP PRO THR VAL SER ALA MET LYS THR GLN ASP LEU SEQRES 12 A 943 ARG HIS THR PHE ILE SER ILE PRO LEU GLN GLY ASP ASP SEQRES 13 A 943 ASP ASP GLU ILE LEU LYS ASN TYR GLN VAL VAL GLU PRO SEQRES 14 A 943 GLU LEU GLN GLN VAL ASN GLY GLY ASP ILE ARG LEU ALA SEQRES 15 A 943 GLY LEU ASN PRO LEU ALA SER GLU LEU THR GLY THR ILE SEQRES 16 A 943 GLY GLU ASP GLN LYS ARG ALA GLU VAL ALA ALA ILE PRO SEQRES 17 A 943 LEU VAL ALA VAL VAL LEU PHE PHE VAL PHE GLY THR VAL SEQRES 18 A 943 ILE ALA ALA ALA LEU PRO ALA ILE ILE GLY GLY LEU ALA SEQRES 19 A 943 ILE ALA GLY ALA LEU GLY ILE MET ARG LEU VAL ALA GLU SEQRES 20 A 943 PHE THR PRO VAL HIS PHE PHE ALA GLN PRO VAL VAL THR SEQRES 21 A 943 LEU ILE GLY LEU GLY ILE ALA ILE ASP TYR GLY LEU PHE SEQRES 22 A 943 ILE VAL SER ARG PHE ARG GLU GLU ILE ALA GLU GLY TYR SEQRES 23 A 943 ASP THR GLU ALA ALA VAL ARG ARG THR VAL MET THR SER SEQRES 24 A 943 GLY ARG THR VAL VAL PHE SER ALA VAL ILE ILE VAL ALA SEQRES 25 A 943 SER SER VAL PRO LEU LEU LEU PHE PRO GLN GLY PHE LEU SEQRES 26 A 943 LYS SER ILE THR TYR ALA ILE ILE ALA SER VAL MET LEU SEQRES 27 A 943 ALA ALA ILE LEU SER ILE THR VAL LEU ALA ALA ALA LEU SEQRES 28 A 943 ALA ILE LEU GLY PRO ARG VAL ASP ALA LEU GLY VAL THR SEQRES 29 A 943 THR LEU LEU LYS ILE PRO PHE LEU ALA ASN TRP GLN PHE SEQRES 30 A 943 SER ARG ARG ILE ILE ASP TRP PHE ALA GLU LYS THR GLN SEQRES 31 A 943 LYS THR LYS THR ARG GLU GLU VAL GLU ARG GLY PHE TRP SEQRES 32 A 943 GLY ARG LEU VAL ASN VAL VAL MET LYS ARG PRO ILE ALA SEQRES 33 A 943 PHE ALA ALA PRO ILE LEU VAL VAL MET VAL LEU LEU ILE SEQRES 34 A 943 ILE PRO LEU GLY GLN LEU SER LEU GLY GLY ILE SER GLU SEQRES 35 A 943 LYS TYR LEU PRO PRO ASP ASN ALA VAL ARG GLN SER GLN SEQRES 36 A 943 GLU GLN PHE ASP LYS LEU PHE PRO GLY PHE ARG THR GLU SEQRES 37 A 943 PRO LEU THR LEU VAL MET LYS ARG GLU ASP GLY GLU PRO SEQRES 38 A 943 ILE THR ASP ALA GLN ILE ALA ASP MET ARG ALA LYS ALA SEQRES 39 A 943 LEU THR VAL SER GLY PHE THR ASP PRO ASP ASN ASP PRO SEQRES 40 A 943 GLU LYS MET TRP LYS GLU ARG PRO ALA ASN ASP SER GLY SEQRES 41 A 943 SER LYS ASP PRO SER VAL ARG VAL ILE GLN ASN GLY LEU SEQRES 42 A 943 GLU ASN ARG ASN ASP ALA ALA LYS LYS ILE ASP GLU LEU SEQRES 43 A 943 ARG ALA LEU GLN PRO PRO HIS GLY ILE GLU VAL PHE VAL SEQRES 44 A 943 GLY GLY THR PRO ALA LEU GLU GLN ASP SER ILE HIS SER SEQRES 45 A 943 LEU PHE ASP LYS LEU PRO LEU MET ALA LEU ILE LEU ILE SEQRES 46 A 943 VAL THR THR THR VAL LEU MET PHE LEU ALA PHE GLY SER SEQRES 47 A 943 VAL VAL LEU PRO ILE LYS ALA ALA LEU MET SER ALA LEU SEQRES 48 A 943 THR LEU GLY SER THR MET GLY ILE LEU THR TRP MET PHE SEQRES 49 A 943 VAL ASP GLY HIS GLY SER GLY LEU MET ASN TYR THR PRO SEQRES 50 A 943 GLN PRO LEU MET ALA PRO MET ILE GLY LEU ILE ILE ALA SEQRES 51 A 943 VAL ILE TRP GLY LEU SER THR ASP TYR GLU VAL PHE LEU SEQRES 52 A 943 VAL SER ARG MET VAL GLU ALA ARG GLU ARG GLY MET SER SEQRES 53 A 943 THR ALA GLU ALA ILE ARG ILE GLY THR ALA THR THR GLY SEQRES 54 A 943 ARG LEU ILE THR GLY ALA ALA LEU ILE LEU ALA VAL VAL SEQRES 55 A 943 ALA GLY ALA PHE VAL PHE SER ASP LEU VAL MET MET LYS SEQRES 56 A 943 TYR LEU ALA PHE GLY LEU LEU ILE ALA LEU LEU LEU ASP SEQRES 57 A 943 ALA THR ILE ILE ARG MET PHE LEU VAL PRO ALA VAL MET SEQRES 58 A 943 LYS LEU LEU GLY ASP ASP CYS TRP TRP ALA PRO ARG TRP SEQRES 59 A 943 MET LYS ARG VAL GLN GLU LYS GLU PHE ASN ILE PHE GLU SEQRES 60 A 943 MET LEU ARG ILE ASP GLU GLY LEU ARG LEU LYS ILE TYR SEQRES 61 A 943 LYS ASP THR GLU GLY TYR TYR THR ILE GLY ILE GLY HIS SEQRES 62 A 943 LEU LEU THR LYS SER PRO SER LEU ASN ALA ALA LYS SER SEQRES 63 A 943 GLU LEU ASP LYS ALA ILE GLY ARG ASN THR ASN GLY VAL SEQRES 64 A 943 ILE THR LYS ASP GLU ALA GLU LYS LEU PHE ASN GLN ASP SEQRES 65 A 943 VAL ASP ALA ALA VAL ARG GLY ILE LEU ARG ASN ALA LYS SEQRES 66 A 943 LEU LYS PRO VAL TYR ASP SER LEU ASP ALA VAL ARG ARG SEQRES 67 A 943 ALA ALA LEU ILE ASN MET VAL PHE GLN MET GLY GLU THR SEQRES 68 A 943 GLY VAL ALA GLY PHE THR ASN SER LEU ARG MET LEU GLN SEQRES 69 A 943 GLN LYS ARG TRP ASP GLU ALA ALA VAL ASN LEU ALA LYS SEQRES 70 A 943 SER ARG TRP TYR ASN GLN THR PRO ASN ARG ALA LYS ARG SEQRES 71 A 943 VAL ILE THR THR PHE ARG THR GLY THR TRP ASP ALA TYR SEQRES 72 A 943 GLU PHE HIS LEU GLY GLY ILE LYS ALA PHE HIS HIS HIS SEQRES 73 A 943 HIS HIS HIS HIS HIS HIS HIS HET 9ZF A1001 23 HET L6T A1002 35 HET L6T A1003 35 HET L6T A1004 35 HET L6T A1005 35 HET L6T A1006 35 HET MHA A1007 13 HET MHA A1008 13 HET MHA A1009 13 HETNAM 9ZF 1-(2-ADAMANTYL)-3-[2,3,4-TRIS(FLUORANYL)PHENYL]UREA HETNAM L6T ALPHA-D-GLUCOPYRANOSYL 6-O-DODECYL-ALPHA-D- HETNAM 2 L6T GLUCOPYRANOSIDE HETNAM MHA (CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETIC ACID HETSYN MHA N-(2-ACETAMIDO)IMINODIACETIC ACID FORMUL 2 9ZF C17 H19 F3 N2 O FORMUL 3 L6T 5(C24 H46 O11) FORMUL 8 MHA 3(C6 H10 N2 O5) HELIX 1 AA1 ASN A -1 PHE A 12 1 14 HELIX 2 AA2 PHE A 12 GLY A 31 1 20 HELIX 3 AA3 ILE A 32 ASN A 36 5 5 HELIX 4 AA4 SER A 48 GLY A 62 1 15 HELIX 5 AA5 ASP A 83 ASP A 100 1 18 HELIX 6 AA6 THR A 121 MET A 125 5 5 HELIX 7 AA7 ASP A 143 GLN A 159 1 17 HELIX 8 AA8 GLN A 160 GLY A 164 5 5 HELIX 9 AA9 GLY A 170 PHE A 205 1 36 HELIX 10 AB1 THR A 207 ALA A 233 1 27 HELIX 11 AB2 PHE A 241 ILE A 249 1 9 HELIX 12 AB3 ILE A 249 GLU A 271 1 23 HELIX 13 AB4 ASP A 274 VAL A 302 1 29 HELIX 14 AB5 PRO A 303 PHE A 307 5 5 HELIX 15 AB6 GLN A 309 ILE A 331 1 23 HELIX 16 AB7 THR A 332 GLY A 342 1 11 HELIX 17 AB8 PRO A 343 ALA A 347 5 5 HELIX 18 AB9 GLY A 349 LEU A 354 1 6 HELIX 19 AC1 TRP A 390 VAL A 397 1 8 HELIX 20 AC2 ARG A 400 GLN A 421 1 22 HELIX 21 AC3 SER A 428 LEU A 432 5 5 HELIX 22 AC4 ASN A 436 PHE A 449 1 14 HELIX 23 AC5 THR A 470 LEU A 482 1 13 HELIX 24 AC6 ASN A 522 ASN A 524 5 3 HELIX 25 AC7 ASP A 525 LEU A 536 1 12 HELIX 26 AC8 GLY A 548 GLY A 584 1 37 HELIX 27 AC9 VAL A 586 VAL A 612 1 27 HELIX 28 AD1 GLY A 616 ASN A 621 1 6 HELIX 29 AD2 ALA A 629 GLY A 661 1 33 HELIX 30 AD3 SER A 663 VAL A 694 1 32 HELIX 31 AD4 LEU A 698 THR A 717 1 20 HELIX 32 AD5 THR A 717 PHE A 722 1 6 HELIX 33 AD6 PHE A 722 LEU A 731 1 10 HELIX 34 AD7 PRO A 739 LYS A 743 5 5 HELIX 35 AD8 ASN A 751 GLU A 760 1 10 HELIX 36 AD9 SER A 787 GLY A 800 1 14 HELIX 37 AE1 THR A 808 LEU A 828 1 21 HELIX 38 AE2 LEU A 833 LEU A 840 1 8 HELIX 39 AE3 ASP A 841 ALA A 861 1 21 HELIX 40 AE4 PHE A 863 GLN A 872 1 10 HELIX 41 AE5 ARG A 874 ALA A 883 1 10 HELIX 42 AE6 SER A 885 THR A 891 1 7 HELIX 43 AE7 THR A 891 GLY A 905 1 15 HELIX 44 AE8 TRP A 907 PHE A 912 1 6 SHEET 1 AA1 2 VAL A 38 THR A 39 0 SHEET 2 AA1 2 VAL A 238 HIS A 239 1 O VAL A 238 N THR A 39 SHEET 1 AA2 4 VAL A 109 GLY A 110 0 SHEET 2 AA2 4 THR A 133 SER A 136 -1 O SER A 136 N VAL A 109 SHEET 3 AA2 4 VAL A 70 LEU A 73 -1 N LEU A 73 O THR A 133 SHEET 4 AA2 4 ILE A 166 ALA A 169 -1 O ALA A 169 N VAL A 70 SHEET 1 AA3 2 LEU A 424 GLY A 425 0 SHEET 2 AA3 2 LEU A 627 MET A 628 1 O LEU A 627 N GLY A 425 SHEET 1 AA4 4 LYS A 499 GLU A 500 0 SHEET 2 AA4 4 VAL A 513 ASN A 518 -1 O GLN A 517 N LYS A 499 SHEET 3 AA4 4 LEU A 457 ARG A 463 -1 N LEU A 459 O ILE A 516 SHEET 4 AA4 4 ILE A 542 GLY A 547 -1 O GLU A 543 N LYS A 462 SHEET 1 AA5 3 ARG A 763 LYS A 768 0 SHEET 2 AA5 3 TYR A 774 GLY A 777 -1 O THR A 775 N TYR A 767 SHEET 3 AA5 3 HIS A 780 THR A 783 -1 O LEU A 782 N TYR A 774 SITE 1 AC1 9 ILE A 249 ILE A 253 SER A 293 ILE A 297 SITE 2 AC1 9 VAL A 638 GLY A 641 LEU A 642 ASP A 645 SITE 3 AC1 9 TYR A 646 SITE 1 AC2 11 GLN A 40 SER A 54 LEU A 55 ASP A 58 SITE 2 AC2 11 ARG A 63 ASP A 64 ASP A 144 LEU A 171 SITE 3 AC2 11 LEU A 178 PHE A 240 ILE A 427 SITE 1 AC3 6 SER A 67 ASP A 119 THR A 121 MET A 125 SITE 2 AC3 6 GLY A 170 ARG A 453 SITE 1 AC4 5 GLN A -3 ARG A 288 THR A 289 PHE A 292 SITE 2 AC4 5 ARG A 653 SITE 1 AC5 4 HIS A 615 LEU A 619 MET A 620 MHA A1009 SITE 1 AC6 5 ALA A 192 ASN A 621 GLY A 691 PHE A 695 SITE 2 AC6 5 ASP A 697 SITE 1 AC7 8 ASP A 759 THR A 891 PRO A 892 ASN A 893 SITE 2 AC7 8 ARG A 894 ILE A 917 LYS A 918 ALA A 919 SITE 1 AC8 7 GLY A 862 PHE A 863 THR A 864 ASN A 865 SITE 2 AC8 7 SER A 866 ASN A 881 MHA A1009 SITE 1 AC9 8 GLY A 614 GLY A 616 SER A 617 GLY A 618 SITE 2 AC9 8 ASN A 881 LYS A 884 L6T A1005 MHA A1008 CRYST1 86.967 141.167 144.214 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011499 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007084 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006934 0.00000