HEADER HYDROLASE 03-SEP-18 6AKR TITLE CRYSTAL STRUCTURE OF THE PDE4D CATALYTIC DOMAIN IN COMPLEX WITH TITLE 2 OSTHOLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 4D; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 381-740; COMPND 5 SYNONYM: DPDE3,PDE43; COMPND 6 EC: 3.1.4.53; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE4D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHODIESTERASE 4D, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.WANG,Y.W.HUO,Y.XIE REVDAT 4 22-NOV-23 6AKR 1 REMARK REVDAT 3 23-MAR-22 6AKR 1 REMARK REVDAT 2 02-DEC-20 6AKR 1 JRNL LINK REVDAT 1 12-FEB-20 6AKR 0 JRNL AUTH S.WANG,Y.XIE,Y.W.HUO,Y.LI,P.W.ABEL,H.JIANG,X.ZOU,H.Z.JIAO, JRNL AUTH 2 X.KUANG,D.W.WOLFF,Y.G.HUANG,T.B.CASALE,R.A.PANETTIERI JR., JRNL AUTH 3 T.WEI,Z.CAO,Y.TU JRNL TITL AIRWAY RELAXATION MECHANISMS AND STRUCTURAL BASIS OF OSTHOLE JRNL TITL 2 FOR IMPROVING LUNG FUNCTION IN ASTHMA. JRNL REF SCI.SIGNAL. V. 13 2020 JRNL REFN ESSN 1937-9145 JRNL PMID 33234690 JRNL DOI 10.1126/SCISIGNAL.AAX0273 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 76639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.630 REMARK 3 FREE R VALUE TEST SET COUNT : 2019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6538 - 5.6030 0.60 6185 166 0.1686 0.1840 REMARK 3 2 5.6030 - 4.4482 0.56 5718 152 0.1763 0.1868 REMARK 3 3 4.4482 - 3.8862 0.52 5388 146 0.1637 0.2028 REMARK 3 4 3.8862 - 3.5310 0.52 5352 145 0.1813 0.2082 REMARK 3 5 3.5310 - 3.2780 0.52 5345 146 0.1866 0.2017 REMARK 3 6 3.2780 - 3.0847 0.52 5324 144 0.2013 0.2431 REMARK 3 7 3.0847 - 2.9303 0.52 5307 144 0.1959 0.2157 REMARK 3 8 2.9303 - 2.8027 0.52 5325 144 0.1993 0.2439 REMARK 3 9 2.8027 - 2.6948 0.52 5322 145 0.1956 0.2545 REMARK 3 10 2.6948 - 2.6019 0.52 5298 143 0.2034 0.2749 REMARK 3 11 2.6019 - 2.5205 0.52 5313 144 0.2175 0.2997 REMARK 3 12 2.5205 - 2.4485 0.51 5249 142 0.2245 0.3034 REMARK 3 13 2.4485 - 2.3840 0.51 5207 141 0.2144 0.2544 REMARK 3 14 2.3840 - 2.3258 0.42 4287 117 0.2181 0.2464 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 10838 REMARK 3 ANGLE : 1.040 14724 REMARK 3 CHIRALITY : 0.068 1688 REMARK 3 PLANARITY : 0.004 1894 REMARK 3 DIHEDRAL : 15.540 4021 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AKR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1300008606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76639 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1Q9M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 18% PEG3350, 25% ETHYLENE REMARK 280 GLYCOL, 10% ISOPROPANOL, PH 7.5, EVAPORATION, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.88250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.83450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.71450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.83450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.88250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.71450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 313 REMARK 465 SER A 314 REMARK 465 HIS A 315 REMARK 465 MET A 316 REMARK 465 ILE A 317 REMARK 465 PRO A 318 REMARK 465 ARG A 319 REMARK 465 PHE A 320 REMARK 465 GLY A 321 REMARK 465 VAL A 322 REMARK 465 LYS A 323 REMARK 465 THR A 324 REMARK 465 GLU A 325 REMARK 465 SER A 651 REMARK 465 PRO A 652 REMARK 465 SER A 653 REMARK 465 PRO A 654 REMARK 465 ALA A 655 REMARK 465 PRO A 656 REMARK 465 ASP A 657 REMARK 465 ASP A 658 REMARK 465 PRO A 659 REMARK 465 GLU A 660 REMARK 465 GLU A 661 REMARK 465 GLY A 662 REMARK 465 ARG A 663 REMARK 465 GLN A 664 REMARK 465 GLY A 665 REMARK 465 GLN A 666 REMARK 465 THR A 667 REMARK 465 GLU A 668 REMARK 465 LYS A 669 REMARK 465 PHE A 670 REMARK 465 GLN A 671 REMARK 465 PHE A 672 REMARK 465 GLU A 673 REMARK 465 LEU A 674 REMARK 465 THR A 675 REMARK 465 LEU A 676 REMARK 465 GLY B 313 REMARK 465 SER B 314 REMARK 465 HIS B 315 REMARK 465 MET B 316 REMARK 465 ILE B 317 REMARK 465 PRO B 318 REMARK 465 ARG B 319 REMARK 465 PRO B 649 REMARK 465 GLN B 650 REMARK 465 SER B 651 REMARK 465 PRO B 652 REMARK 465 SER B 653 REMARK 465 PRO B 654 REMARK 465 ALA B 655 REMARK 465 PRO B 656 REMARK 465 ASP B 657 REMARK 465 ASP B 658 REMARK 465 PRO B 659 REMARK 465 GLU B 660 REMARK 465 GLU B 661 REMARK 465 GLY B 662 REMARK 465 ARG B 663 REMARK 465 GLN B 664 REMARK 465 GLY B 665 REMARK 465 GLN B 666 REMARK 465 THR B 667 REMARK 465 GLU B 668 REMARK 465 LYS B 669 REMARK 465 PHE B 670 REMARK 465 GLN B 671 REMARK 465 PHE B 672 REMARK 465 GLU B 673 REMARK 465 LEU B 674 REMARK 465 THR B 675 REMARK 465 LEU B 676 REMARK 465 GLY C 313 REMARK 465 SER C 314 REMARK 465 HIS C 315 REMARK 465 MET C 316 REMARK 465 ILE C 317 REMARK 465 PRO C 318 REMARK 465 ARG C 319 REMARK 465 PHE C 320 REMARK 465 GLY C 321 REMARK 465 VAL C 322 REMARK 465 LYS C 323 REMARK 465 THR C 324 REMARK 465 GLN C 650 REMARK 465 SER C 651 REMARK 465 PRO C 652 REMARK 465 SER C 653 REMARK 465 PRO C 654 REMARK 465 ALA C 655 REMARK 465 PRO C 656 REMARK 465 ASP C 657 REMARK 465 ASP C 658 REMARK 465 PRO C 659 REMARK 465 GLU C 660 REMARK 465 GLU C 661 REMARK 465 GLY C 662 REMARK 465 ARG C 663 REMARK 465 GLN C 664 REMARK 465 GLY C 665 REMARK 465 GLN C 666 REMARK 465 THR C 667 REMARK 465 GLU C 668 REMARK 465 LYS C 669 REMARK 465 PHE C 670 REMARK 465 GLN C 671 REMARK 465 PHE C 672 REMARK 465 GLU C 673 REMARK 465 LEU C 674 REMARK 465 THR C 675 REMARK 465 LEU C 676 REMARK 465 GLY D 313 REMARK 465 SER D 314 REMARK 465 HIS D 315 REMARK 465 MET D 316 REMARK 465 ILE D 317 REMARK 465 PRO D 318 REMARK 465 ARG D 319 REMARK 465 PHE D 320 REMARK 465 GLY D 321 REMARK 465 VAL D 322 REMARK 465 LYS D 323 REMARK 465 THR D 324 REMARK 465 GLU D 325 REMARK 465 GLN D 326 REMARK 465 SER D 651 REMARK 465 PRO D 652 REMARK 465 SER D 653 REMARK 465 PRO D 654 REMARK 465 ALA D 655 REMARK 465 PRO D 656 REMARK 465 ASP D 657 REMARK 465 ASP D 658 REMARK 465 PRO D 659 REMARK 465 GLU D 660 REMARK 465 GLU D 661 REMARK 465 GLY D 662 REMARK 465 ARG D 663 REMARK 465 GLN D 664 REMARK 465 GLY D 665 REMARK 465 GLN D 666 REMARK 465 THR D 667 REMARK 465 GLU D 668 REMARK 465 LYS D 669 REMARK 465 PHE D 670 REMARK 465 GLN D 671 REMARK 465 PHE D 672 REMARK 465 GLU D 673 REMARK 465 LEU D 674 REMARK 465 THR D 675 REMARK 465 LEU D 676 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 650 O HOH A 801 2.05 REMARK 500 O HOH A 829 O HOH A 922 2.08 REMARK 500 O HOH C 833 O HOH C 853 2.12 REMARK 500 O HOH D 879 O HOH D 884 2.12 REMARK 500 OD2 ASP B 635 O HOH B 801 2.14 REMARK 500 O HIS C 438 O HOH C 801 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU C 482 NZ LYS D 492 3444 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 397 -61.04 -104.73 REMARK 500 ILE A 614 -59.45 -123.23 REMARK 500 SER B 465 51.10 33.45 REMARK 500 SER B 512 -8.70 -59.93 REMARK 500 LYS B 528 150.14 -46.47 REMARK 500 SER B 532 -72.14 31.39 REMARK 500 LEU B 536 156.75 -48.72 REMARK 500 LEU B 557 46.92 -109.75 REMARK 500 ASN B 600 64.22 -151.21 REMARK 500 ILE B 614 -65.36 -122.11 REMARK 500 ASN C 399 -163.81 -129.40 REMARK 500 ASP C 539 -71.63 -61.32 REMARK 500 LEU C 557 44.16 -100.01 REMARK 500 ILE C 614 -55.94 -130.49 REMARK 500 SER C 646 -1.29 -59.28 REMARK 500 VAL D 337 -18.64 -49.72 REMARK 500 LEU D 342 142.70 -37.07 REMARK 500 TYR D 397 -60.51 -108.06 REMARK 500 ASN D 399 -167.88 -129.00 REMARK 500 SER D 465 46.45 39.40 REMARK 500 ASP D 539 -75.09 -71.65 REMARK 500 LEU D 557 36.04 -98.06 REMARK 500 ASN D 600 49.37 -165.18 REMARK 500 ILE D 614 -56.50 -127.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 402 NE2 REMARK 620 2 HIS A 438 NE2 93.7 REMARK 620 3 ASP A 439 OD2 86.0 84.0 REMARK 620 4 ASP A 556 OD1 85.9 93.3 171.3 REMARK 620 5 HOH A 860 O 89.8 175.5 99.0 84.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 439 OD1 REMARK 620 2 HOH A 823 O 85.6 REMARK 620 3 HOH A 826 O 91.1 169.3 REMARK 620 4 HOH A 830 O 161.3 85.9 94.2 REMARK 620 5 HOH A 880 O 83.0 86.6 82.9 79.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 402 NE2 REMARK 620 2 HIS B 438 NE2 90.2 REMARK 620 3 ASP B 439 OD2 85.9 85.5 REMARK 620 4 ASP B 556 OD1 84.4 85.1 166.5 REMARK 620 5 HOH B 880 O 99.3 170.5 94.7 96.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 439 OD1 REMARK 620 2 HOH B 808 O 83.0 REMARK 620 3 HOH B 827 O 158.4 82.5 REMARK 620 4 HOH B 836 O 74.7 86.5 88.4 REMARK 620 5 HOH B 870 O 98.8 171.0 93.2 85.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 402 NE2 REMARK 620 2 HIS C 438 NE2 91.4 REMARK 620 3 ASP C 439 OD2 88.7 81.1 REMARK 620 4 ASP C 556 OD1 84.3 88.9 167.7 REMARK 620 5 HOH C 860 O 99.7 168.8 100.8 90.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 439 OD1 REMARK 620 2 HOH C 801 O 72.6 REMARK 620 3 HOH C 814 O 156.2 94.3 REMARK 620 4 HOH C 836 O 90.6 154.7 94.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 402 NE2 REMARK 620 2 HIS D 438 NE2 93.4 REMARK 620 3 ASP D 439 OD2 83.9 94.4 REMARK 620 4 ASP D 556 OD1 90.1 82.9 173.2 REMARK 620 5 HOH D 878 O 94.8 164.8 99.2 84.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 439 OD1 REMARK 620 2 HOH D 819 O 73.3 REMARK 620 3 HOH D 831 O 152.7 82.2 REMARK 620 4 HOH D 874 O 116.7 164.9 85.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A0O A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A0O B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A0O C 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A0O D 703 DBREF 6AKR A 317 676 UNP Q08499 PDE4D_HUMAN 381 740 DBREF 6AKR B 317 676 UNP Q08499 PDE4D_HUMAN 381 740 DBREF 6AKR C 317 676 UNP Q08499 PDE4D_HUMAN 381 740 DBREF 6AKR D 317 676 UNP Q08499 PDE4D_HUMAN 381 740 SEQADV 6AKR GLY A 313 UNP Q08499 EXPRESSION TAG SEQADV 6AKR SER A 314 UNP Q08499 EXPRESSION TAG SEQADV 6AKR HIS A 315 UNP Q08499 EXPRESSION TAG SEQADV 6AKR MET A 316 UNP Q08499 EXPRESSION TAG SEQADV 6AKR GLY B 313 UNP Q08499 EXPRESSION TAG SEQADV 6AKR SER B 314 UNP Q08499 EXPRESSION TAG SEQADV 6AKR HIS B 315 UNP Q08499 EXPRESSION TAG SEQADV 6AKR MET B 316 UNP Q08499 EXPRESSION TAG SEQADV 6AKR GLY C 313 UNP Q08499 EXPRESSION TAG SEQADV 6AKR SER C 314 UNP Q08499 EXPRESSION TAG SEQADV 6AKR HIS C 315 UNP Q08499 EXPRESSION TAG SEQADV 6AKR MET C 316 UNP Q08499 EXPRESSION TAG SEQADV 6AKR GLY D 313 UNP Q08499 EXPRESSION TAG SEQADV 6AKR SER D 314 UNP Q08499 EXPRESSION TAG SEQADV 6AKR HIS D 315 UNP Q08499 EXPRESSION TAG SEQADV 6AKR MET D 316 UNP Q08499 EXPRESSION TAG SEQRES 1 A 364 GLY SER HIS MET ILE PRO ARG PHE GLY VAL LYS THR GLU SEQRES 2 A 364 GLN GLU ASP VAL LEU ALA LYS GLU LEU GLU ASP VAL ASN SEQRES 3 A 364 LYS TRP GLY LEU HIS VAL PHE ARG ILE ALA GLU LEU SER SEQRES 4 A 364 GLY ASN ARG PRO LEU THR VAL ILE MET HIS THR ILE PHE SEQRES 5 A 364 GLN GLU ARG ASP LEU LEU LYS THR PHE LYS ILE PRO VAL SEQRES 6 A 364 ASP THR LEU ILE THR TYR LEU MET THR LEU GLU ASP HIS SEQRES 7 A 364 TYR HIS ALA ASP VAL ALA TYR HIS ASN ASN ILE HIS ALA SEQRES 8 A 364 ALA ASP VAL VAL GLN SER THR HIS VAL LEU LEU SER THR SEQRES 9 A 364 PRO ALA LEU GLU ALA VAL PHE THR ASP LEU GLU ILE LEU SEQRES 10 A 364 ALA ALA ILE PHE ALA SER ALA ILE HIS ASP VAL ASP HIS SEQRES 11 A 364 PRO GLY VAL SER ASN GLN PHE LEU ILE ASN THR ASN SER SEQRES 12 A 364 GLU LEU ALA LEU MET TYR ASN ASP SER SER VAL LEU GLU SEQRES 13 A 364 ASN HIS HIS LEU ALA VAL GLY PHE LYS LEU LEU GLN GLU SEQRES 14 A 364 GLU ASN CYS ASP ILE PHE GLN ASN LEU THR LYS LYS GLN SEQRES 15 A 364 ARG GLN SER LEU ARG LYS MET VAL ILE ASP ILE VAL LEU SEQRES 16 A 364 ALA THR ASP MET SER LYS HIS MET ASN LEU LEU ALA ASP SEQRES 17 A 364 LEU LYS THR MET VAL GLU THR LYS LYS VAL THR SER SER SEQRES 18 A 364 GLY VAL LEU LEU LEU ASP ASN TYR SER ASP ARG ILE GLN SEQRES 19 A 364 VAL LEU GLN ASN MET VAL HIS CYS ALA ASP LEU SER ASN SEQRES 20 A 364 PRO THR LYS PRO LEU GLN LEU TYR ARG GLN TRP THR ASP SEQRES 21 A 364 ARG ILE MET GLU GLU PHE PHE ARG GLN GLY ASP ARG GLU SEQRES 22 A 364 ARG GLU ARG GLY MET GLU ILE SER PRO MET CYS ASP LYS SEQRES 23 A 364 HIS ASN ALA SER VAL GLU LYS SER GLN VAL GLY PHE ILE SEQRES 24 A 364 ASP TYR ILE VAL HIS PRO LEU TRP GLU THR TRP ALA ASP SEQRES 25 A 364 LEU VAL HIS PRO ASP ALA GLN ASP ILE LEU ASP THR LEU SEQRES 26 A 364 GLU ASP ASN ARG GLU TRP TYR GLN SER THR ILE PRO GLN SEQRES 27 A 364 SER PRO SER PRO ALA PRO ASP ASP PRO GLU GLU GLY ARG SEQRES 28 A 364 GLN GLY GLN THR GLU LYS PHE GLN PHE GLU LEU THR LEU SEQRES 1 B 364 GLY SER HIS MET ILE PRO ARG PHE GLY VAL LYS THR GLU SEQRES 2 B 364 GLN GLU ASP VAL LEU ALA LYS GLU LEU GLU ASP VAL ASN SEQRES 3 B 364 LYS TRP GLY LEU HIS VAL PHE ARG ILE ALA GLU LEU SER SEQRES 4 B 364 GLY ASN ARG PRO LEU THR VAL ILE MET HIS THR ILE PHE SEQRES 5 B 364 GLN GLU ARG ASP LEU LEU LYS THR PHE LYS ILE PRO VAL SEQRES 6 B 364 ASP THR LEU ILE THR TYR LEU MET THR LEU GLU ASP HIS SEQRES 7 B 364 TYR HIS ALA ASP VAL ALA TYR HIS ASN ASN ILE HIS ALA SEQRES 8 B 364 ALA ASP VAL VAL GLN SER THR HIS VAL LEU LEU SER THR SEQRES 9 B 364 PRO ALA LEU GLU ALA VAL PHE THR ASP LEU GLU ILE LEU SEQRES 10 B 364 ALA ALA ILE PHE ALA SER ALA ILE HIS ASP VAL ASP HIS SEQRES 11 B 364 PRO GLY VAL SER ASN GLN PHE LEU ILE ASN THR ASN SER SEQRES 12 B 364 GLU LEU ALA LEU MET TYR ASN ASP SER SER VAL LEU GLU SEQRES 13 B 364 ASN HIS HIS LEU ALA VAL GLY PHE LYS LEU LEU GLN GLU SEQRES 14 B 364 GLU ASN CYS ASP ILE PHE GLN ASN LEU THR LYS LYS GLN SEQRES 15 B 364 ARG GLN SER LEU ARG LYS MET VAL ILE ASP ILE VAL LEU SEQRES 16 B 364 ALA THR ASP MET SER LYS HIS MET ASN LEU LEU ALA ASP SEQRES 17 B 364 LEU LYS THR MET VAL GLU THR LYS LYS VAL THR SER SER SEQRES 18 B 364 GLY VAL LEU LEU LEU ASP ASN TYR SER ASP ARG ILE GLN SEQRES 19 B 364 VAL LEU GLN ASN MET VAL HIS CYS ALA ASP LEU SER ASN SEQRES 20 B 364 PRO THR LYS PRO LEU GLN LEU TYR ARG GLN TRP THR ASP SEQRES 21 B 364 ARG ILE MET GLU GLU PHE PHE ARG GLN GLY ASP ARG GLU SEQRES 22 B 364 ARG GLU ARG GLY MET GLU ILE SER PRO MET CYS ASP LYS SEQRES 23 B 364 HIS ASN ALA SER VAL GLU LYS SER GLN VAL GLY PHE ILE SEQRES 24 B 364 ASP TYR ILE VAL HIS PRO LEU TRP GLU THR TRP ALA ASP SEQRES 25 B 364 LEU VAL HIS PRO ASP ALA GLN ASP ILE LEU ASP THR LEU SEQRES 26 B 364 GLU ASP ASN ARG GLU TRP TYR GLN SER THR ILE PRO GLN SEQRES 27 B 364 SER PRO SER PRO ALA PRO ASP ASP PRO GLU GLU GLY ARG SEQRES 28 B 364 GLN GLY GLN THR GLU LYS PHE GLN PHE GLU LEU THR LEU SEQRES 1 C 364 GLY SER HIS MET ILE PRO ARG PHE GLY VAL LYS THR GLU SEQRES 2 C 364 GLN GLU ASP VAL LEU ALA LYS GLU LEU GLU ASP VAL ASN SEQRES 3 C 364 LYS TRP GLY LEU HIS VAL PHE ARG ILE ALA GLU LEU SER SEQRES 4 C 364 GLY ASN ARG PRO LEU THR VAL ILE MET HIS THR ILE PHE SEQRES 5 C 364 GLN GLU ARG ASP LEU LEU LYS THR PHE LYS ILE PRO VAL SEQRES 6 C 364 ASP THR LEU ILE THR TYR LEU MET THR LEU GLU ASP HIS SEQRES 7 C 364 TYR HIS ALA ASP VAL ALA TYR HIS ASN ASN ILE HIS ALA SEQRES 8 C 364 ALA ASP VAL VAL GLN SER THR HIS VAL LEU LEU SER THR SEQRES 9 C 364 PRO ALA LEU GLU ALA VAL PHE THR ASP LEU GLU ILE LEU SEQRES 10 C 364 ALA ALA ILE PHE ALA SER ALA ILE HIS ASP VAL ASP HIS SEQRES 11 C 364 PRO GLY VAL SER ASN GLN PHE LEU ILE ASN THR ASN SER SEQRES 12 C 364 GLU LEU ALA LEU MET TYR ASN ASP SER SER VAL LEU GLU SEQRES 13 C 364 ASN HIS HIS LEU ALA VAL GLY PHE LYS LEU LEU GLN GLU SEQRES 14 C 364 GLU ASN CYS ASP ILE PHE GLN ASN LEU THR LYS LYS GLN SEQRES 15 C 364 ARG GLN SER LEU ARG LYS MET VAL ILE ASP ILE VAL LEU SEQRES 16 C 364 ALA THR ASP MET SER LYS HIS MET ASN LEU LEU ALA ASP SEQRES 17 C 364 LEU LYS THR MET VAL GLU THR LYS LYS VAL THR SER SER SEQRES 18 C 364 GLY VAL LEU LEU LEU ASP ASN TYR SER ASP ARG ILE GLN SEQRES 19 C 364 VAL LEU GLN ASN MET VAL HIS CYS ALA ASP LEU SER ASN SEQRES 20 C 364 PRO THR LYS PRO LEU GLN LEU TYR ARG GLN TRP THR ASP SEQRES 21 C 364 ARG ILE MET GLU GLU PHE PHE ARG GLN GLY ASP ARG GLU SEQRES 22 C 364 ARG GLU ARG GLY MET GLU ILE SER PRO MET CYS ASP LYS SEQRES 23 C 364 HIS ASN ALA SER VAL GLU LYS SER GLN VAL GLY PHE ILE SEQRES 24 C 364 ASP TYR ILE VAL HIS PRO LEU TRP GLU THR TRP ALA ASP SEQRES 25 C 364 LEU VAL HIS PRO ASP ALA GLN ASP ILE LEU ASP THR LEU SEQRES 26 C 364 GLU ASP ASN ARG GLU TRP TYR GLN SER THR ILE PRO GLN SEQRES 27 C 364 SER PRO SER PRO ALA PRO ASP ASP PRO GLU GLU GLY ARG SEQRES 28 C 364 GLN GLY GLN THR GLU LYS PHE GLN PHE GLU LEU THR LEU SEQRES 1 D 364 GLY SER HIS MET ILE PRO ARG PHE GLY VAL LYS THR GLU SEQRES 2 D 364 GLN GLU ASP VAL LEU ALA LYS GLU LEU GLU ASP VAL ASN SEQRES 3 D 364 LYS TRP GLY LEU HIS VAL PHE ARG ILE ALA GLU LEU SER SEQRES 4 D 364 GLY ASN ARG PRO LEU THR VAL ILE MET HIS THR ILE PHE SEQRES 5 D 364 GLN GLU ARG ASP LEU LEU LYS THR PHE LYS ILE PRO VAL SEQRES 6 D 364 ASP THR LEU ILE THR TYR LEU MET THR LEU GLU ASP HIS SEQRES 7 D 364 TYR HIS ALA ASP VAL ALA TYR HIS ASN ASN ILE HIS ALA SEQRES 8 D 364 ALA ASP VAL VAL GLN SER THR HIS VAL LEU LEU SER THR SEQRES 9 D 364 PRO ALA LEU GLU ALA VAL PHE THR ASP LEU GLU ILE LEU SEQRES 10 D 364 ALA ALA ILE PHE ALA SER ALA ILE HIS ASP VAL ASP HIS SEQRES 11 D 364 PRO GLY VAL SER ASN GLN PHE LEU ILE ASN THR ASN SER SEQRES 12 D 364 GLU LEU ALA LEU MET TYR ASN ASP SER SER VAL LEU GLU SEQRES 13 D 364 ASN HIS HIS LEU ALA VAL GLY PHE LYS LEU LEU GLN GLU SEQRES 14 D 364 GLU ASN CYS ASP ILE PHE GLN ASN LEU THR LYS LYS GLN SEQRES 15 D 364 ARG GLN SER LEU ARG LYS MET VAL ILE ASP ILE VAL LEU SEQRES 16 D 364 ALA THR ASP MET SER LYS HIS MET ASN LEU LEU ALA ASP SEQRES 17 D 364 LEU LYS THR MET VAL GLU THR LYS LYS VAL THR SER SER SEQRES 18 D 364 GLY VAL LEU LEU LEU ASP ASN TYR SER ASP ARG ILE GLN SEQRES 19 D 364 VAL LEU GLN ASN MET VAL HIS CYS ALA ASP LEU SER ASN SEQRES 20 D 364 PRO THR LYS PRO LEU GLN LEU TYR ARG GLN TRP THR ASP SEQRES 21 D 364 ARG ILE MET GLU GLU PHE PHE ARG GLN GLY ASP ARG GLU SEQRES 22 D 364 ARG GLU ARG GLY MET GLU ILE SER PRO MET CYS ASP LYS SEQRES 23 D 364 HIS ASN ALA SER VAL GLU LYS SER GLN VAL GLY PHE ILE SEQRES 24 D 364 ASP TYR ILE VAL HIS PRO LEU TRP GLU THR TRP ALA ASP SEQRES 25 D 364 LEU VAL HIS PRO ASP ALA GLN ASP ILE LEU ASP THR LEU SEQRES 26 D 364 GLU ASP ASN ARG GLU TRP TYR GLN SER THR ILE PRO GLN SEQRES 27 D 364 SER PRO SER PRO ALA PRO ASP ASP PRO GLU GLU GLY ARG SEQRES 28 D 364 GLN GLY GLN THR GLU LYS PHE GLN PHE GLU LEU THR LEU HET ZN A 701 1 HET ZN A 702 1 HET A0O A 703 34 HET ZN B 701 1 HET ZN B 702 1 HET A0O B 703 34 HET ZN C 701 1 HET ZN C 702 1 HET A0O C 703 34 HET ZN D 701 1 HET ZN D 702 1 HET A0O D 703 34 HETNAM ZN ZINC ION HETNAM A0O 7-METHOXY-8-(3-METHYLBUT-2-ENYL)CHROMEN-2-ONE FORMUL 5 ZN 8(ZN 2+) FORMUL 7 A0O 4(C15 H16 O3) FORMUL 17 HOH *404(H2 O) HELIX 1 AA1 GLN A 326 GLU A 335 1 10 HELIX 2 AA2 ASP A 336 LYS A 339 5 4 HELIX 3 AA3 HIS A 343 SER A 351 1 9 HELIX 4 AA4 ARG A 354 ARG A 367 1 14 HELIX 5 AA5 ASP A 368 PHE A 373 1 6 HELIX 6 AA6 PRO A 376 HIS A 390 1 15 HELIX 7 AA7 ASN A 399 SER A 415 1 17 HELIX 8 AA8 THR A 416 GLU A 420 5 5 HELIX 9 AA9 THR A 424 HIS A 438 1 15 HELIX 10 AB1 SER A 446 THR A 453 1 8 HELIX 11 AB2 SER A 455 TYR A 461 1 7 HELIX 12 AB3 SER A 465 LEU A 478 1 14 HELIX 13 AB4 LEU A 479 GLU A 481 5 3 HELIX 14 AB5 THR A 491 ALA A 508 1 18 HELIX 15 AB6 THR A 509 SER A 512 5 4 HELIX 16 AB7 LYS A 513 THR A 527 1 15 HELIX 17 AB8 ASN A 540 LEU A 557 1 18 HELIX 18 AB9 SER A 558 LYS A 562 5 5 HELIX 19 AC1 PRO A 563 ARG A 588 1 26 HELIX 20 AC2 SER A 602 ILE A 614 1 13 HELIX 21 AC3 ILE A 614 VAL A 626 1 13 HELIX 22 AC4 ALA A 630 SER A 646 1 17 HELIX 23 AC5 THR B 324 LEU B 334 1 11 HELIX 24 AC6 GLU B 335 VAL B 337 5 3 HELIX 25 AC7 HIS B 343 SER B 351 1 9 HELIX 26 AC8 ARG B 354 ARG B 367 1 14 HELIX 27 AC9 ASP B 368 PHE B 373 1 6 HELIX 28 AD1 PRO B 376 HIS B 390 1 15 HELIX 29 AD2 ASN B 399 SER B 415 1 17 HELIX 30 AD3 THR B 416 GLU B 420 5 5 HELIX 31 AD4 THR B 424 HIS B 438 1 15 HELIX 32 AD5 SER B 446 THR B 453 1 8 HELIX 33 AD6 SER B 455 TYR B 461 1 7 HELIX 34 AD7 SER B 465 LEU B 478 1 14 HELIX 35 AD8 LEU B 479 GLU B 481 5 3 HELIX 36 AD9 THR B 491 ALA B 508 1 18 HELIX 37 AE1 THR B 509 SER B 512 5 4 HELIX 38 AE2 LYS B 513 THR B 527 1 15 HELIX 39 AE3 ASN B 540 LEU B 557 1 18 HELIX 40 AE4 SER B 558 LYS B 562 5 5 HELIX 41 AE5 PRO B 563 ARG B 588 1 26 HELIX 42 AE6 SER B 602 ILE B 614 1 13 HELIX 43 AE7 ILE B 614 VAL B 626 1 13 HELIX 44 AE8 ALA B 630 THR B 647 1 18 HELIX 45 AE9 GLN C 326 GLU C 335 1 10 HELIX 46 AF1 ASP C 336 LYS C 339 5 4 HELIX 47 AF2 HIS C 343 SER C 351 1 9 HELIX 48 AF3 ARG C 354 ARG C 367 1 14 HELIX 49 AF4 ASP C 368 PHE C 373 1 6 HELIX 50 AF5 PRO C 376 HIS C 390 1 15 HELIX 51 AF6 ASN C 399 LEU C 414 1 16 HELIX 52 AF7 SER C 415 GLU C 420 5 6 HELIX 53 AF8 THR C 424 HIS C 438 1 15 HELIX 54 AF9 SER C 446 THR C 453 1 8 HELIX 55 AG1 SER C 455 ASN C 462 1 8 HELIX 56 AG2 SER C 465 LEU C 478 1 14 HELIX 57 AG3 LEU C 479 GLU C 481 5 3 HELIX 58 AG4 THR C 491 ALA C 508 1 18 HELIX 59 AG5 THR C 509 SER C 512 5 4 HELIX 60 AG6 LYS C 513 THR C 527 1 15 HELIX 61 AG7 ASN C 540 LEU C 557 1 18 HELIX 62 AG8 SER C 558 LYS C 562 5 5 HELIX 63 AG9 PRO C 563 ARG C 588 1 26 HELIX 64 AH1 SER C 602 ILE C 614 1 13 HELIX 65 AH2 ILE C 614 VAL C 626 1 13 HELIX 66 AH3 ALA C 630 SER C 646 1 17 HELIX 67 AH4 ASP D 328 LEU D 334 1 7 HELIX 68 AH5 GLU D 335 LYS D 339 5 5 HELIX 69 AH6 HIS D 343 SER D 351 1 9 HELIX 70 AH7 ARG D 354 ARG D 367 1 14 HELIX 71 AH8 ASP D 368 PHE D 373 1 6 HELIX 72 AH9 PRO D 376 HIS D 390 1 15 HELIX 73 AI1 ASN D 399 SER D 415 1 17 HELIX 74 AI2 THR D 416 GLU D 420 5 5 HELIX 75 AI3 THR D 424 HIS D 438 1 15 HELIX 76 AI4 SER D 446 THR D 453 1 8 HELIX 77 AI5 SER D 455 TYR D 461 1 7 HELIX 78 AI6 SER D 465 LEU D 478 1 14 HELIX 79 AI7 LEU D 479 GLU D 481 5 3 HELIX 80 AI8 THR D 491 ALA D 508 1 18 HELIX 81 AI9 THR D 509 SER D 512 5 4 HELIX 82 AJ1 LYS D 513 THR D 527 1 15 HELIX 83 AJ2 ASN D 540 LEU D 557 1 18 HELIX 84 AJ3 SER D 558 LYS D 562 5 5 HELIX 85 AJ4 PRO D 563 ARG D 588 1 26 HELIX 86 AJ5 SER D 602 ILE D 614 1 13 HELIX 87 AJ6 ILE D 614 VAL D 626 1 13 HELIX 88 AJ7 ALA D 630 SER D 646 1 17 LINK NE2 HIS A 402 ZN ZN A 701 1555 1555 2.26 LINK NE2 HIS A 438 ZN ZN A 701 1555 1555 2.14 LINK OD2 ASP A 439 ZN ZN A 701 1555 1555 2.14 LINK OD1 ASP A 439 ZN ZN A 702 1555 1555 2.33 LINK OD1 ASP A 556 ZN ZN A 701 1555 1555 2.30 LINK ZN ZN A 701 O HOH A 860 1555 1555 2.50 LINK ZN ZN A 702 O HOH A 823 1555 1555 2.30 LINK ZN ZN A 702 O HOH A 826 1555 1555 2.46 LINK ZN ZN A 702 O HOH A 830 1555 1555 2.51 LINK ZN ZN A 702 O HOH A 880 1555 1555 2.51 LINK NE2 HIS B 402 ZN ZN B 701 1555 1555 2.20 LINK NE2 HIS B 438 ZN ZN B 701 1555 1555 2.25 LINK OD2 ASP B 439 ZN ZN B 701 1555 1555 2.18 LINK OD1 ASP B 439 ZN ZN B 702 1555 1555 2.38 LINK OD1 ASP B 556 ZN ZN B 701 1555 1555 2.34 LINK ZN ZN B 701 O HOH B 880 1555 1555 2.38 LINK ZN ZN B 702 O HOH B 808 1555 1555 2.46 LINK ZN ZN B 702 O HOH B 827 1555 1555 2.44 LINK ZN ZN B 702 O HOH B 836 1555 1555 2.57 LINK ZN ZN B 702 O HOH B 870 1555 1555 2.41 LINK NE2 HIS C 402 ZN ZN C 701 1555 1555 2.32 LINK NE2 HIS C 438 ZN ZN C 701 1555 1555 2.22 LINK OD2 ASP C 439 ZN ZN C 701 1555 1555 2.23 LINK OD1 ASP C 439 ZN ZN C 702 1555 1555 2.29 LINK OD1 ASP C 556 ZN ZN C 701 1555 1555 2.39 LINK ZN ZN C 701 O HOH C 860 1555 1555 2.30 LINK ZN ZN C 702 O HOH C 801 1555 1555 2.43 LINK ZN ZN C 702 O HOH C 814 1555 1555 2.52 LINK ZN ZN C 702 O HOH C 836 1555 1555 2.46 LINK NE2 HIS D 402 ZN ZN D 701 1555 1555 2.32 LINK NE2 HIS D 438 ZN ZN D 701 1555 1555 2.36 LINK OD2 ASP D 439 ZN ZN D 701 1555 1555 2.27 LINK OD1 ASP D 439 ZN ZN D 702 1555 1555 2.31 LINK OD1 ASP D 556 ZN ZN D 701 1555 1555 2.34 LINK ZN ZN D 701 O HOH D 878 1555 1555 2.25 LINK ZN ZN D 702 O HOH D 819 1555 1555 2.54 LINK ZN ZN D 702 O HOH D 831 1555 1555 2.43 LINK ZN ZN D 702 O HOH D 874 1555 1555 2.23 CISPEP 1 HIS A 627 PRO A 628 0 -1.22 CISPEP 2 HIS B 627 PRO B 628 0 2.38 CISPEP 3 HIS C 627 PRO C 628 0 3.53 CISPEP 4 HIS D 627 PRO D 628 0 4.92 SITE 1 AC1 6 HIS A 402 HIS A 438 ASP A 439 ASP A 556 SITE 2 AC1 6 ZN A 702 HOH A 860 SITE 1 AC2 6 ASP A 439 ZN A 701 HOH A 823 HOH A 826 SITE 2 AC2 6 HOH A 830 HOH A 880 SITE 1 AC3 9 TYR A 397 ASN A 559 TYR A 567 THR A 571 SITE 2 AC3 9 MET A 575 PHE A 578 MET A 595 GLN A 607 SITE 3 AC3 9 PHE A 610 SITE 1 AC4 6 HIS B 402 HIS B 438 ASP B 439 ASP B 556 SITE 2 AC4 6 ZN B 702 HOH B 880 SITE 1 AC5 6 ASP B 439 ZN B 701 HOH B 808 HOH B 827 SITE 2 AC5 6 HOH B 836 HOH B 870 SITE 1 AC6 8 TYR B 397 ASN B 559 THR B 571 ILE B 574 SITE 2 AC6 8 PHE B 578 MET B 595 GLN B 607 PHE B 610 SITE 1 AC7 6 HIS C 402 HIS C 438 ASP C 439 ASP C 556 SITE 2 AC7 6 ZN C 702 HOH C 860 SITE 1 AC8 6 ASP C 439 ZN C 701 HOH C 801 HOH C 814 SITE 2 AC8 6 HOH C 836 HOH C 840 SITE 1 AC9 7 TYR C 397 ASN C 559 THR C 571 ILE C 574 SITE 2 AC9 7 MET C 595 GLN C 607 PHE C 610 SITE 1 AD1 6 HIS D 402 HIS D 438 ASP D 439 ASP D 556 SITE 2 AD1 6 ZN D 702 HOH D 878 SITE 1 AD2 6 ASP D 439 ZN D 701 HOH D 818 HOH D 819 SITE 2 AD2 6 HOH D 831 HOH D 874 SITE 1 AD3 7 ASN D 559 TYR D 567 THR D 571 PHE D 578 SITE 2 AD3 7 MET D 595 GLN D 607 PHE D 610 CRYST1 99.765 111.429 159.669 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010024 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008974 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006263 0.00000