HEADER VIRUS 03-SEP-18 6AKS TITLE CRYO-EM STRUCTURE OF CVA10 MATURE VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VP2; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: VP3; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: VP4; COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS A10; SOURCE 3 ORGANISM_TAXID: 42769; SOURCE 4 EXPRESSION_SYSTEM: CHLOROCEBUS AETHIOPS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9534; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS A10; SOURCE 8 ORGANISM_TAXID: 42769; SOURCE 9 EXPRESSION_SYSTEM: CHLOROCEBUS AETHIOPS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9534; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS A10; SOURCE 13 ORGANISM_TAXID: 42769; SOURCE 14 EXPRESSION_SYSTEM: CHLOROCEBUS AETHIOPS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9534; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS A10; SOURCE 18 ORGANISM_TAXID: 42769; SOURCE 19 EXPRESSION_SYSTEM: CHLOROCEBUS AETHIOPS; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 9534 KEYWDS PICORNAVIRUS UNCOATING, RECEPTOR BINDING, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR L.ZHU,Y.SUN,J.Y.FAN,B.ZHU,L.CAO,Q.GAO,Y.J.ZHANG,H.R.LIU,Z.H.RAO, AUTHOR 2 X.X.WANG REVDAT 2 27-MAR-24 6AKS 1 REMARK REVDAT 1 16-JAN-19 6AKS 0 JRNL AUTH L.ZHU,Y.SUN,J.FAN,B.ZHU,L.CAO,Q.GAO,Y.ZHANG,H.LIU,Z.RAO, JRNL AUTH 2 X.WANG JRNL TITL STRUCTURES OF COXSACKIEVIRUS A10 UNVEIL THE MOLECULAR JRNL TITL 2 MECHANISMS OF RECEPTOR BINDING AND VIRAL UNCOATING. JRNL REF NAT COMMUN V. 9 4985 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30478256 JRNL DOI 10.1038/S41467-018-07531-0 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.000 REMARK 3 NUMBER OF PARTICLES : 4586 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6AKS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1300008951. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COXSACKIEVIRUS A10 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.670820 0.162460 0.723607 0.00000 REMARK 350 BIOMT2 2 -0.688191 0.500000 0.525731 0.00000 REMARK 350 BIOMT3 2 -0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 3 0.138197 -0.425325 0.894427 0.00000 REMARK 350 BIOMT2 3 -0.951057 -0.309017 0.000000 0.00000 REMARK 350 BIOMT3 3 0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 4 0.138197 -0.951057 0.276393 0.00000 REMARK 350 BIOMT2 4 -0.425325 -0.309017 -0.850651 0.00000 REMARK 350 BIOMT3 4 0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 5 0.670820 -0.688191 -0.276393 0.00000 REMARK 350 BIOMT2 5 0.162460 0.500000 -0.850651 0.00000 REMARK 350 BIOMT3 5 0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 6 -0.861803 -0.425325 0.276393 0.00000 REMARK 350 BIOMT2 6 -0.425325 0.309017 -0.850651 0.00000 REMARK 350 BIOMT3 6 0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 7 -0.361803 -0.587785 -0.723607 0.00000 REMARK 350 BIOMT2 7 -0.262866 0.809017 -0.525731 0.00000 REMARK 350 BIOMT3 7 0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 8 0.361803 0.262866 -0.894427 0.00000 REMARK 350 BIOMT2 8 -0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 8 0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 9 0.309017 0.951057 0.000000 0.00000 REMARK 350 BIOMT2 9 -0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 10 -0.447214 0.525731 0.723607 0.00000 REMARK 350 BIOMT2 10 -0.850651 0.000000 -0.525731 0.00000 REMARK 350 BIOMT3 10 -0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 11 0.809017 0.587785 0.000000 0.00000 REMARK 350 BIOMT2 11 0.587785 -0.809017 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 0.138197 0.425325 0.894427 0.00000 REMARK 350 BIOMT2 12 0.951057 -0.309017 0.000000 0.00000 REMARK 350 BIOMT3 12 0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 13 -0.447214 -0.525731 0.723607 0.00000 REMARK 350 BIOMT2 13 0.850651 0.000000 0.525731 0.00000 REMARK 350 BIOMT3 13 -0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 14 -0.138197 -0.951057 -0.276393 0.00000 REMARK 350 BIOMT2 14 0.425325 -0.309017 0.850651 0.00000 REMARK 350 BIOMT3 14 -0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 15 0.638197 -0.262866 -0.723607 0.00000 REMARK 350 BIOMT2 15 0.262866 -0.809017 0.525731 0.00000 REMARK 350 BIOMT3 15 -0.723607 -0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 16 -0.947214 -0.162460 -0.276393 0.00000 REMARK 350 BIOMT2 16 -0.162460 -0.500000 0.850651 0.00000 REMARK 350 BIOMT3 16 -0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 17 -0.447214 0.000000 -0.894427 0.00000 REMARK 350 BIOMT2 17 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 17 -0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 18 -0.052786 0.688191 -0.723607 0.00000 REMARK 350 BIOMT2 18 0.688191 -0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 18 -0.723607 -0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 19 -0.309017 0.951057 0.000000 0.00000 REMARK 350 BIOMT2 19 0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 19 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 20 -0.861803 0.425325 0.276393 0.00000 REMARK 350 BIOMT2 20 0.425325 0.309017 0.850651 0.00000 REMARK 350 BIOMT3 20 0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 21 0.052786 0.688191 0.723607 0.00000 REMARK 350 BIOMT2 21 -0.688191 -0.500000 0.525731 0.00000 REMARK 350 BIOMT3 21 0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 22 -0.638197 -0.262866 0.723607 0.00000 REMARK 350 BIOMT2 22 -0.262866 -0.809017 -0.525731 0.00000 REMARK 350 BIOMT3 22 0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 23 -0.447214 -0.850651 -0.276393 0.00000 REMARK 350 BIOMT2 23 0.525731 0.000000 -0.850651 0.00000 REMARK 350 BIOMT3 23 0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 24 0.361803 -0.262866 -0.894427 0.00000 REMARK 350 BIOMT2 24 0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 24 0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 25 0.670820 0.688191 -0.276393 0.00000 REMARK 350 BIOMT2 25 -0.162460 0.500000 0.850651 0.00000 REMARK 350 BIOMT3 25 0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 26 -0.138197 -0.425325 -0.894427 0.00000 REMARK 350 BIOMT2 26 0.951057 -0.309017 0.000000 0.00000 REMARK 350 BIOMT3 26 -0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 27 0.447214 0.525731 -0.723607 0.00000 REMARK 350 BIOMT2 27 0.850651 0.000000 0.525731 0.00000 REMARK 350 BIOMT3 27 0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 28 0.138197 0.951057 0.276393 0.00000 REMARK 350 BIOMT2 28 0.425325 -0.309017 0.850651 0.00000 REMARK 350 BIOMT3 28 0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 29 -0.638197 0.262866 0.723607 0.00000 REMARK 350 BIOMT2 29 0.262866 -0.809017 0.525731 0.00000 REMARK 350 BIOMT3 29 0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 30 -0.809017 -0.587785 0.000000 0.00000 REMARK 350 BIOMT2 30 0.587785 -0.809017 0.000000 0.00000 REMARK 350 BIOMT3 30 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 31 0.447214 -0.525731 -0.723607 0.00000 REMARK 350 BIOMT2 31 -0.850651 0.000000 -0.525731 0.00000 REMARK 350 BIOMT3 31 0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 32 0.861803 0.425325 -0.276393 0.00000 REMARK 350 BIOMT2 32 -0.425325 0.309017 -0.850651 0.00000 REMARK 350 BIOMT3 32 -0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 33 0.361803 0.587785 0.723607 0.00000 REMARK 350 BIOMT2 33 -0.262866 0.809017 -0.525731 0.00000 REMARK 350 BIOMT3 33 -0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 34 -0.361803 -0.262866 0.894427 0.00000 REMARK 350 BIOMT2 34 -0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 34 -0.723607 -0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 35 -0.309017 -0.951057 0.000000 0.00000 REMARK 350 BIOMT2 35 -0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 35 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 36 -0.361803 0.262866 0.894427 0.00000 REMARK 350 BIOMT2 36 0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 36 -0.723607 0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 37 -0.670820 -0.688191 0.276393 0.00000 REMARK 350 BIOMT2 37 -0.162460 0.500000 0.850651 0.00000 REMARK 350 BIOMT3 37 -0.723607 0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 38 -0.052786 -0.688191 -0.723607 0.00000 REMARK 350 BIOMT2 38 -0.688191 -0.500000 0.525731 0.00000 REMARK 350 BIOMT3 38 -0.723607 0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 39 0.638197 0.262866 -0.723607 0.00000 REMARK 350 BIOMT2 39 -0.262866 -0.809017 -0.525731 0.00000 REMARK 350 BIOMT3 39 -0.723607 0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 40 0.447214 0.850651 0.276393 0.00000 REMARK 350 BIOMT2 40 0.525731 0.000000 -0.850651 0.00000 REMARK 350 BIOMT3 40 -0.723607 0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 41 0.052786 -0.688191 0.723607 0.00000 REMARK 350 BIOMT2 41 0.688191 -0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 41 0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 42 0.309017 -0.951057 0.000000 0.00000 REMARK 350 BIOMT2 42 0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 42 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 43 0.861803 -0.425325 -0.276393 0.00000 REMARK 350 BIOMT2 43 0.425325 0.309017 0.850651 0.00000 REMARK 350 BIOMT3 43 -0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 44 0.947214 0.162460 0.276393 0.00000 REMARK 350 BIOMT2 44 -0.162460 -0.500000 0.850651 0.00000 REMARK 350 BIOMT3 44 0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 45 0.447214 0.000000 0.894427 0.00000 REMARK 350 BIOMT2 45 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 45 0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 46 0.447214 -0.850651 0.276393 0.00000 REMARK 350 BIOMT2 46 -0.525731 0.000000 0.850651 0.00000 REMARK 350 BIOMT3 46 -0.723607 -0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 47 0.809017 -0.587785 0.000000 0.00000 REMARK 350 BIOMT2 47 -0.587785 -0.809017 0.000000 0.00000 REMARK 350 BIOMT3 47 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 48 0.947214 -0.162460 0.276393 0.00000 REMARK 350 BIOMT2 48 0.162460 -0.500000 -0.850651 0.00000 REMARK 350 BIOMT3 48 0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 49 0.670820 -0.162460 0.723607 0.00000 REMARK 350 BIOMT2 49 0.688191 0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 49 -0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 50 0.361803 -0.587785 0.723607 0.00000 REMARK 350 BIOMT2 50 0.262866 0.809017 0.525731 0.00000 REMARK 350 BIOMT3 50 -0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 51 -0.361803 0.587785 -0.723607 0.00000 REMARK 350 BIOMT2 51 0.262866 0.809017 0.525731 0.00000 REMARK 350 BIOMT3 51 0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 52 -0.447214 0.850651 -0.276393 0.00000 REMARK 350 BIOMT2 52 -0.525731 0.000000 0.850651 0.00000 REMARK 350 BIOMT3 52 0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 53 -0.809017 0.587785 0.000000 0.00000 REMARK 350 BIOMT2 53 -0.587785 -0.809017 0.000000 0.00000 REMARK 350 BIOMT3 53 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 54 -0.947214 0.162460 -0.276393 0.00000 REMARK 350 BIOMT2 54 0.162460 -0.500000 -0.850651 0.00000 REMARK 350 BIOMT3 54 -0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 55 -0.670820 0.162460 -0.723607 0.00000 REMARK 350 BIOMT2 55 0.688191 0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 55 0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 56 -0.138197 0.951057 -0.276393 0.00000 REMARK 350 BIOMT2 56 -0.425325 -0.309017 -0.850651 0.00000 REMARK 350 BIOMT3 56 -0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 57 -0.670820 0.688191 0.276393 0.00000 REMARK 350 BIOMT2 57 0.162460 0.500000 -0.850651 0.00000 REMARK 350 BIOMT3 57 -0.723607 -0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 58 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 58 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 59 -0.670820 -0.162460 -0.723607 0.00000 REMARK 350 BIOMT2 59 -0.688191 0.500000 0.525731 0.00000 REMARK 350 BIOMT3 59 0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 60 -0.138197 0.425325 -0.894427 0.00000 REMARK 350 BIOMT2 60 -0.951057 -0.309017 0.000000 0.00000 REMARK 350 BIOMT3 60 -0.276393 0.850651 0.447214 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 HIS A 9 REMARK 465 ASP A 10 REMARK 465 ALA A 11 REMARK 465 LEU A 12 REMARK 465 GLY A 13 REMARK 465 SER A 14 REMARK 465 THR A 15 REMARK 465 ALA A 16 REMARK 465 ARG A 17 REMARK 465 SER B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 VAL B 4 REMARK 465 GLU B 5 REMARK 465 ALA B 6 REMARK 465 CYS B 7 REMARK 465 GLY B 8 REMARK 465 TYR B 9 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 ALA D 3 REMARK 465 GLN D 4 REMARK 465 VAL D 5 REMARK 465 SER D 6 REMARK 465 THR D 7 REMARK 465 GLN D 8 REMARK 465 LYS D 9 REMARK 465 SER D 10 REMARK 465 GLY D 11 REMARK 465 SER D 12 REMARK 465 HIS D 13 REMARK 465 GLU D 14 REMARK 465 THR D 15 REMARK 465 GLY D 16 REMARK 465 ASN D 17 REMARK 465 VAL D 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR D 24 OG1 CG2 REMARK 470 ARG D 43 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 62 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 51 OG SER C 161 2.10 REMARK 500 OG1 THR A 172 O ASN A 175 2.13 REMARK 500 OD1 ASP A 205 OH TYR A 221 2.14 REMARK 500 O GLY A 98 OG1 THR A 102 2.14 REMARK 500 O ALA C 61 OG1 THR C 65 2.16 REMARK 500 OE2 GLU A 133 NE2 GLN A 188 2.17 REMARK 500 OD2 ASP A 205 OG SER B 211 2.18 REMARK 500 O SER A 56 NZ LYS C 114 2.19 REMARK 500 OG1 THR A 138 OH TYR A 152 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 40 161.52 177.53 REMARK 500 THR A 96 -72.22 -63.15 REMARK 500 ASP A 97 -6.99 63.17 REMARK 500 THR A 100 -131.44 56.58 REMARK 500 ASN A 142 -73.99 -84.56 REMARK 500 GLU A 144 173.66 171.59 REMARK 500 THR A 174 -57.55 -129.60 REMARK 500 SER A 238 173.79 177.46 REMARK 500 GLU A 240 -77.64 -79.77 REMARK 500 ALA A 241 158.80 175.34 REMARK 500 VAL A 261 77.09 52.68 REMARK 500 LEU A 271 -56.45 -127.03 REMARK 500 PRO A 276 46.17 -88.59 REMARK 500 ASP B 11 -61.61 -129.39 REMARK 500 ASN B 30 -147.46 45.35 REMARK 500 THR B 48 -57.75 -128.54 REMARK 500 ASP B 57 -115.88 58.96 REMARK 500 ARG B 62 166.30 174.11 REMARK 500 SER B 104 172.15 175.35 REMARK 500 LYS B 116 -8.64 -57.67 REMARK 500 ASP B 168 -9.15 62.75 REMARK 500 ASN B 200 159.22 177.60 REMARK 500 ASN B 243 71.94 55.02 REMARK 500 ASN C 11 -0.25 75.19 REMARK 500 ASN C 57 -1.30 -53.22 REMARK 500 THR C 62 -149.19 55.68 REMARK 500 CYS C 81 -64.70 -125.07 REMARK 500 ALA C 139 -173.70 -67.89 REMARK 500 ASN C 183 -62.53 -134.25 REMARK 500 THR C 198 -77.56 -121.84 REMARK 500 ILE C 226 76.15 58.85 REMARK 500 THR D 20 -135.42 47.25 REMARK 500 THR D 28 -56.84 -129.58 REMARK 500 THR D 42 -60.26 -128.42 REMARK 500 ARG D 43 -0.21 89.82 REMARK 500 GLN D 44 -160.60 52.69 REMARK 500 PRO D 56 53.78 -102.61 REMARK 500 LEU D 58 -75.74 -63.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPH A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-9642 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF CVA10 MATURE VIRUS DBREF 6AKS A 1 297 UNP W0G0K3 W0G0K3_9ENTO 1 297 DBREF1 6AKS B 1 255 UNP A0A0C5AZ80_9ENTO DBREF2 6AKS B A0A0C5AZ80 70 324 DBREF1 6AKS C 1 240 UNP A0A0C5AWF6_9ENTO DBREF2 6AKS C A0A0C5AWF6 325 564 DBREF 6AKS D 1 69 UNP Q75Q92 Q75Q92_9ENTO 1 69 SEQRES 1 A 297 GLY ASP PRO VAL GLU ASP ILE ILE HIS ASP ALA LEU GLY SEQRES 2 A 297 SER THR ALA ARG ARG ALA ILE SER SER ALA THR ASN VAL SEQRES 3 A 297 GLU SER ALA ALA ASN THR THR PRO SER SER HIS ARG LEU SEQRES 4 A 297 GLU THR GLY ARG VAL PRO ALA LEU GLN ALA ALA GLU THR SEQRES 5 A 297 GLY ALA THR SER ASN ALA THR ASP GLU ASN MET ILE GLU SEQRES 6 A 297 THR ARG CYS VAL VAL ASN ARG ASN GLY VAL LEU GLU THR SEQRES 7 A 297 THR ILE ASN HIS PHE PHE SER ARG SER GLY LEU VAL GLY SEQRES 8 A 297 VAL VAL ASN LEU THR ASP GLY GLY THR ASP THR THR GLY SEQRES 9 A 297 TYR VAL THR TRP ASP ILE ASP ILE MET GLY PHE VAL GLN SEQRES 10 A 297 LEU ARG ARG LYS CYS GLU MET PHE THR TYR MET ARG PHE SEQRES 11 A 297 ASN ALA GLU PHE THR PHE VAL THR THR THR LYS ASN GLY SEQRES 12 A 297 GLU ALA ARG PRO TYR MET LEU GLN TYR MET TYR VAL PRO SEQRES 13 A 297 PRO GLY ALA PRO LYS PRO THR GLY ARG ASP ALA PHE GLN SEQRES 14 A 297 TRP GLN THR ALA THR ASN PRO SER VAL PHE VAL LYS LEU SEQRES 15 A 297 THR ASP PRO PRO ALA GLN VAL SER VAL PRO PHE MET SER SEQRES 16 A 297 PRO ALA SER ALA TYR GLN TRP PHE TYR ASP GLY TYR PRO SEQRES 17 A 297 THR PHE GLY GLN HIS PRO GLU THR SER ASN THR THR TYR SEQRES 18 A 297 GLY LEU CYS PRO ASN ASN MET MET GLY THR PHE ALA VAL SEQRES 19 A 297 ARG VAL VAL SER ARG GLU ALA SER GLN LEU LYS LEU GLN SEQRES 20 A 297 THR ARG VAL TYR MET LYS LEU LYS HIS VAL ARG ALA TRP SEQRES 21 A 297 VAL PRO ARG PRO ILE ARG SER GLN PRO TYR LEU LEU LYS SEQRES 22 A 297 ASN PHE PRO ASN TYR ASP SER SER LYS ILE THR ASN SER SEQRES 23 A 297 ALA ARG ASP ARG SER SER ILE LYS GLN ALA ASN SEQRES 1 B 255 SER PRO SER VAL GLU ALA CYS GLY TYR SER ASP ARG VAL SEQRES 2 B 255 ALA GLN LEU THR VAL GLY ASN SER SER ILE THR THR GLN SEQRES 3 B 255 GLU ALA ALA ASN ILE VAL LEU ALA TYR GLY GLU TRP PRO SEQRES 4 B 255 GLU TYR CYS PRO ASP THR ASP ALA THR ALA VAL ASP LYS SEQRES 5 B 255 PRO THR ARG PRO ASP VAL SER VAL ASN ARG PHE TYR THR SEQRES 6 B 255 LEU ASP SER LYS MET TRP GLN GLU ASN SER THR GLY TRP SEQRES 7 B 255 TYR TRP LYS PHE PRO ASP VAL LEU ASN LYS THR GLY VAL SEQRES 8 B 255 PHE GLY GLN ASN ALA GLN PHE HIS TYR LEU TYR ARG SER SEQRES 9 B 255 GLY PHE CYS LEU HIS VAL GLN CYS ASN ALA SER LYS PHE SEQRES 10 B 255 HIS GLN GLY ALA LEU LEU VAL ALA VAL ILE PRO GLU PHE SEQRES 11 B 255 VAL ILE ALA GLY ARG GLY SER ASN THR LYS PRO ASN GLU SEQRES 12 B 255 ALA PRO HIS PRO GLY PHE THR THR THR PHE PRO GLY THR SEQRES 13 B 255 THR GLY ALA THR PHE HIS ASP PRO TYR VAL LEU ASP SER SEQRES 14 B 255 GLY VAL PRO LEU SER GLN ALA LEU ILE TYR PRO HIS GLN SEQRES 15 B 255 TRP ILE ASN LEU ARG THR ASN ASN CYS ALA THR VAL ILE SEQRES 16 B 255 VAL PRO TYR ILE ASN ALA VAL PRO PHE ASP SER ALA ILE SEQRES 17 B 255 ASN HIS SER ASN PHE GLY LEU ILE VAL ILE PRO VAL SER SEQRES 18 B 255 PRO LEU LYS TYR SER SER GLY ALA THR THR ALA ILE PRO SEQRES 19 B 255 ILE THR ILE THR ILE ALA PRO LEU ASN SER GLU PHE GLY SEQRES 20 B 255 GLY LEU ARG GLN ALA VAL SER GLN SEQRES 1 C 240 GLY ILE PRO ALA GLU LEU ARG PRO GLY THR ASN GLN PHE SEQRES 2 C 240 LEU THR THR ASP ASP ASP THR ALA ALA PRO ILE LEU PRO SEQRES 3 C 240 GLY PHE THR PRO THR PRO THR ILE HIS ILE PRO GLY GLU SEQRES 4 C 240 VAL HIS SER LEU LEU GLU LEU CYS ARG VAL GLU THR ILE SEQRES 5 C 240 LEU GLU VAL ASN ASN THR THR GLU ALA THR GLY LEU THR SEQRES 6 C 240 ARG LEU LEU ILE PRO VAL SER SER GLN ASN LYS ALA ASP SEQRES 7 C 240 GLU LEU CYS ALA ALA PHE MET VAL ASP PRO GLY ARG ILE SEQRES 8 C 240 GLY PRO TRP GLN SER THR LEU VAL GLY GLN ILE CYS ARG SEQRES 9 C 240 TYR TYR THR GLN TRP SER GLY SER LEU LYS VAL THR PHE SEQRES 10 C 240 MET PHE THR GLY SER PHE MET ALA THR GLY LYS MET LEU SEQRES 11 C 240 VAL ALA TYR SER PRO PRO GLY SER ALA GLN PRO ALA ASN SEQRES 12 C 240 ARG GLU THR ALA MET LEU GLY THR HIS VAL ILE TRP ASP SEQRES 13 C 240 PHE GLY LEU GLN SER SER VAL SER LEU VAL ILE PRO TRP SEQRES 14 C 240 ILE SER ASN THR HIS PHE ARG THR ALA LYS THR GLY GLY SEQRES 15 C 240 ASN TYR ASP TYR TYR THR ALA GLY VAL VAL THR LEU TRP SEQRES 16 C 240 TYR GLN THR ASN TYR VAL VAL PRO PRO GLU THR PRO GLY SEQRES 17 C 240 GLU ALA TYR ILE ILE ALA MET GLY ALA ASP LEU TYR LYS SEQRES 18 C 240 PHE THR LEU LYS ILE CYS LYS ASP THR ASP GLU VAL THR SEQRES 19 C 240 GLN GLN ALA VAL LEU GLN SEQRES 1 D 69 MET GLY ALA GLN VAL SER THR GLN LYS SER GLY SER HIS SEQRES 2 D 69 GLU THR GLY ASN VAL ALA THR GLY GLY SER THR ILE ASN SEQRES 3 D 69 PHE THR ASN ILE ASN TYR TYR LYS ASP SER TYR ALA ALA SEQRES 4 D 69 SER ALA THR ARG GLN ASP PHE THR GLN ASP PRO LYS LYS SEQRES 5 D 69 PHE THR GLN PRO VAL LEU ASP SER ILE ARG GLU LEU SER SEQRES 6 D 69 ALA PRO LEU ASN HET SPH A 300 21 HETNAM SPH SPHINGOSINE FORMUL 5 SPH C18 H37 N O2 HELIX 1 AA1 ALA A 49 GLY A 53 5 5 HELIX 2 AA2 THR A 59 ILE A 64 1 6 HELIX 3 AA3 VAL A 75 THR A 78 5 4 HELIX 4 AA4 THR A 79 SER A 85 1 7 HELIX 5 AA5 ASP A 111 GLY A 114 5 4 HELIX 6 AA6 PHE A 115 GLU A 123 1 9 HELIX 7 AA7 ALA A 167 THR A 172 5 6 HELIX 8 AA8 CYS A 224 MET A 228 5 5 HELIX 9 AA9 TYR B 35 GLU B 37 5 3 HELIX 10 AB1 PRO B 56 VAL B 60 5 5 HELIX 11 AB2 PRO B 83 ASN B 87 5 5 HELIX 12 AB3 THR B 89 PHE B 98 1 10 HELIX 13 AB4 GLY B 148 PHE B 153 1 6 HELIX 14 AB5 PRO B 172 TYR B 179 5 8 HELIX 15 AB6 LEU C 64 ARG C 66 5 3 HELIX 16 AB7 GLY C 92 SER C 96 5 5 HELIX 17 AB8 THR C 97 CYS C 103 1 7 HELIX 18 AB9 ASN C 143 MET C 148 1 6 HELIX 19 AC1 ASN C 183 THR C 188 5 6 HELIX 20 AC2 PRO D 50 GLN D 55 1 6 SHEET 1 AA1 2 THR A 24 ASN A 25 0 SHEET 2 AA1 2 THR D 47 GLN D 48 -1 O GLN D 48 N THR A 24 SHEET 1 AA2 5 GLY A 88 LEU A 95 0 SHEET 2 AA2 5 LEU A 246 PRO A 262 -1 O VAL A 250 N VAL A 90 SHEET 3 AA2 5 PHE A 125 THR A 140 -1 N VAL A 137 O ARG A 249 SHEET 4 AA2 5 ALA A 187 VAL A 191 -1 O VAL A 191 N ALA A 132 SHEET 5 AA2 5 ALA C 22 PRO C 23 1 O ALA C 22 N SER A 190 SHEET 1 AA3 4 TYR A 200 GLN A 201 0 SHEET 2 AA3 4 PHE A 125 THR A 140 -1 N MET A 128 O TYR A 200 SHEET 3 AA3 4 LEU A 246 PRO A 262 -1 O ARG A 249 N VAL A 137 SHEET 4 AA3 4 GLU C 39 VAL C 40 -1 O VAL C 40 N ALA A 259 SHEET 1 AA4 4 TYR A 105 ASP A 109 0 SHEET 2 AA4 4 THR A 231 VAL A 236 -1 O PHE A 232 N TRP A 108 SHEET 3 AA4 4 MET A 149 VAL A 155 -1 N VAL A 155 O THR A 231 SHEET 4 AA4 4 SER A 177 LYS A 181 -1 O VAL A 178 N TYR A 152 SHEET 1 AA5 2 ALA B 14 VAL B 18 0 SHEET 2 AA5 2 SER B 21 THR B 25 -1 O ILE B 23 N LEU B 16 SHEET 1 AA6 5 VAL B 32 LEU B 33 0 SHEET 2 AA6 5 CYS B 191 VAL B 196 1 O ILE B 195 N VAL B 32 SHEET 3 AA6 5 PHE B 106 GLN B 111 -1 N LEU B 108 O VAL B 194 SHEET 4 AA6 5 ILE B 233 ALA B 240 -1 O THR B 238 N HIS B 109 SHEET 5 AA6 5 TYR B 64 THR B 65 -1 N TYR B 64 O ILE B 239 SHEET 1 AA7 5 VAL B 32 LEU B 33 0 SHEET 2 AA7 5 CYS B 191 VAL B 196 1 O ILE B 195 N VAL B 32 SHEET 3 AA7 5 PHE B 106 GLN B 111 -1 N LEU B 108 O VAL B 194 SHEET 4 AA7 5 ILE B 233 ALA B 240 -1 O THR B 238 N HIS B 109 SHEET 5 AA7 5 LYS B 69 TRP B 71 -1 N TRP B 71 O ILE B 233 SHEET 1 AA8 5 ALA B 159 THR B 160 0 SHEET 2 AA8 5 TRP B 78 PHE B 82 -1 N TYR B 79 O ALA B 159 SHEET 3 AA8 5 PHE B 213 TYR B 225 -1 O PHE B 213 N PHE B 82 SHEET 4 AA8 5 HIS B 118 PRO B 128 -1 N LEU B 123 O ILE B 218 SHEET 5 AA8 5 HIS B 181 ASN B 185 -1 O GLN B 182 N VAL B 124 SHEET 1 AA9 2 HIS B 99 ARG B 103 0 SHEET 2 AA9 2 GLU B 245 LEU B 249 -1 O GLU B 245 N ARG B 103 SHEET 1 AB1 3 THR C 51 ILE C 52 0 SHEET 2 AB1 3 GLU C 209 ASP C 218 -1 O GLY C 216 N THR C 51 SHEET 3 AB1 3 LEU C 68 SER C 72 -1 N VAL C 71 O ALA C 210 SHEET 1 AB2 4 THR C 51 ILE C 52 0 SHEET 2 AB2 4 GLU C 209 ASP C 218 -1 O GLY C 216 N THR C 51 SHEET 3 AB2 4 LEU C 113 THR C 120 -1 N MET C 118 O ILE C 213 SHEET 4 AB2 4 SER C 162 ILE C 167 -1 O LEU C 165 N VAL C 115 SHEET 1 AB3 4 LEU C 80 MET C 85 0 SHEET 2 AB3 4 VAL C 191 TYR C 196 -1 O VAL C 192 N PHE C 84 SHEET 3 AB3 4 LYS C 128 SER C 134 -1 N LEU C 130 O TRP C 195 SHEET 4 AB3 4 THR C 151 ASP C 156 -1 O THR C 151 N TYR C 133 SHEET 1 AB4 3 ARG C 176 THR C 177 0 SHEET 2 AB4 3 TYR C 106 SER C 110 -1 N TRP C 109 O ARG C 176 SHEET 3 AB4 3 THR C 223 CYS C 227 -1 O THR C 223 N SER C 110 CISPEP 1 PHE B 82 PRO B 83 0 -2.41 CISPEP 2 ALA D 41 THR D 42 0 10.35 SITE 1 AC1 8 ILE A 110 ASP A 111 ILE A 112 VAL A 191 SITE 2 AC1 8 MET A 194 TYR A 200 TRP A 202 ASN A 227 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.002058 0.000000 0.000000 0.00000 SCALE2 0.000000 0.002058 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002058 0.00000