HEADER OXIDOREDUCTASE 07-AUG-17 6ALA TITLE CRYSTAL STRUCTURE OF H108A PEPTIDYLGLYCINE ALPHA-HYDROXYLATING TITLE 2 MONOOXYGENASE (PHM) IN COMPLEX WITH CITRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: PHM; COMPND 5 SYNONYM: PAM; COMPND 6 EC: 1.14.17.3,4.3.2.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PAM; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: CHO KEYWDS PEPTIDYLGLYCINE MONOOXYGENASE, PEPTIDYLGLYCINE 2-HYDROXYLASE, PHM, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MAHESHWARI,K.RUDZKA,S.B.GABELLI,L.M.AMZEL REVDAT 5 04-OCT-23 6ALA 1 LINK REVDAT 4 27-NOV-19 6ALA 1 REMARK REVDAT 3 20-FEB-19 6ALA 1 REMARK REVDAT 2 17-OCT-18 6ALA 1 JRNL REVDAT 1 18-JUL-18 6ALA 0 JRNL AUTH S.MAHESHWARI,C.SHIMOKAWA,K.RUDZKA,C.D.KLINE,B.A.EIPPER, JRNL AUTH 2 R.E.MAINS,S.B.GABELLI,N.BLACKBURN,L.M.AMZEL JRNL TITL EFFECTS OF COPPER OCCUPANCY ON THE CONFORMATIONAL LANDSCAPE JRNL TITL 2 OF PEPTIDYLGLYCINE ALPHA-HYDROXYLATING MONOOXYGENASE. JRNL REF COMMUN BIOL V. 1 74 2018 JRNL REFN ESSN 2399-3642 JRNL PMID 30271955 JRNL DOI 10.1038/S42003-018-0082-Y REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 23911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1231 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1716 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4697 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.59000 REMARK 3 B22 (A**2) : -1.50000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.533 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.288 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.212 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.217 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4939 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4566 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6703 ; 1.896 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10529 ; 1.042 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 601 ; 8.379 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;35.305 ;22.967 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 759 ;17.227 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;14.700 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 728 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5504 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1136 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6ALA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229407. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25240 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.570 REMARK 200 RESOLUTION RANGE LOW (A) : 29.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.57800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 1PHM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19-24% PEG 4000, TRIS HCL, PH 8.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.68500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.23100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.68500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.23100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 45 REMARK 465 GLU A 46 REMARK 465 CYS A 47 REMARK 465 LEU A 48 REMARK 465 GLY A 49 REMARK 465 THR A 50 REMARK 465 ILE A 51 REMARK 465 GLY A 52 REMARK 465 PRO A 53 REMARK 465 VAL A 54 REMARK 465 THR A 55 REMARK 465 PRO A 56 REMARK 465 LEU A 57 REMARK 465 ASP A 58 REMARK 465 ALA A 59 REMARK 465 ASN C 45 REMARK 465 GLU C 46 REMARK 465 CYS C 47 REMARK 465 LEU C 48 REMARK 465 GLY C 49 REMARK 465 THR C 50 REMARK 465 ILE C 51 REMARK 465 GLY C 52 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP C 133 O HOH C 1101 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP C 133 N - CA - CB ANGL. DEV. = -11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 101 149.55 -179.86 REMARK 500 TYR A 123 154.03 179.60 REMARK 500 THR A 130 -67.55 -96.37 REMARK 500 ALA A 142 -52.46 -149.47 REMARK 500 ARG A 143 65.11 -116.89 REMARK 500 ASP A 181 -46.76 -16.58 REMARK 500 HIS A 244 -147.46 -98.54 REMARK 500 ALA A 348 -39.82 -38.77 REMARK 500 PRO A 355 97.92 -66.55 REMARK 500 LEU C 57 -93.25 -113.35 REMARK 500 ASP C 58 63.29 -105.74 REMARK 500 ALA C 59 -68.48 53.49 REMARK 500 THR C 130 -73.33 -93.42 REMARK 500 ASP C 133 160.26 -26.64 REMARK 500 HIS C 244 -153.78 -99.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR C 132 ASP C 133 148.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1001 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 107 NE2 REMARK 620 2 HIS A 242 NE2 114.7 REMARK 620 3 HIS A 244 NE2 96.8 96.0 REMARK 620 4 FLC A1002 OB1 141.3 100.3 95.3 REMARK 620 5 FLC A1002 OHB 100.0 78.2 163.2 70.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C1001 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 107 NE2 REMARK 620 2 HIS C 242 NE2 112.8 REMARK 620 3 HIS C 244 NE2 86.5 93.9 REMARK 620 4 FLC C1002 OA2 149.6 95.3 79.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU C 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC C 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 1008 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WJA RELATED DB: PDB REMARK 900 RELATED ID: 5WKW RELATED DB: PDB REMARK 900 RELATED ID: 5WM0 RELATED DB: PDB DBREF 6ALA A 45 356 UNP P14925 AMD_RAT 45 356 DBREF 6ALA C 45 356 UNP P14925 AMD_RAT 45 356 SEQADV 6ALA ALA A 108 UNP P14925 HIS 108 ENGINEERED MUTATION SEQADV 6ALA ALA C 108 UNP P14925 HIS 108 ENGINEERED MUTATION SEQRES 1 A 312 ASN GLU CYS LEU GLY THR ILE GLY PRO VAL THR PRO LEU SEQRES 2 A 312 ASP ALA SER ASP PHE ALA LEU ASP ILE ARG MET PRO GLY SEQRES 3 A 312 VAL THR PRO LYS GLU SER ASP THR TYR PHE CYS MET SER SEQRES 4 A 312 MET ARG LEU PRO VAL ASP GLU GLU ALA PHE VAL ILE ASP SEQRES 5 A 312 PHE LYS PRO ARG ALA SER MET ASP THR VAL HIS ALA MET SEQRES 6 A 312 LEU LEU PHE GLY CYS ASN MET PRO SER SER THR GLY SER SEQRES 7 A 312 TYR TRP PHE CYS ASP GLU GLY THR CYS THR ASP LYS ALA SEQRES 8 A 312 ASN ILE LEU TYR ALA TRP ALA ARG ASN ALA PRO PRO THR SEQRES 9 A 312 ARG LEU PRO LYS GLY VAL GLY PHE ARG VAL GLY GLY GLU SEQRES 10 A 312 THR GLY SER LYS TYR PHE VAL LEU GLN VAL HIS TYR GLY SEQRES 11 A 312 ASP ILE SER ALA PHE ARG ASP ASN HIS LYS ASP CYS SER SEQRES 12 A 312 GLY VAL SER VAL HIS LEU THR ARG VAL PRO GLN PRO LEU SEQRES 13 A 312 ILE ALA GLY MET TYR LEU MET MET SER VAL ASP THR VAL SEQRES 14 A 312 ILE PRO PRO GLY GLU LYS VAL VAL ASN ALA ASP ILE SER SEQRES 15 A 312 CYS GLN TYR LYS MET TYR PRO MET HIS VAL PHE ALA TYR SEQRES 16 A 312 ARG VAL HIS THR HIS HIS LEU GLY LYS VAL VAL SER GLY SEQRES 17 A 312 TYR ARG VAL ARG ASN GLY GLN TRP THR LEU ILE GLY ARG SEQRES 18 A 312 GLN ASN PRO GLN LEU PRO GLN ALA PHE TYR PRO VAL GLU SEQRES 19 A 312 HIS PRO VAL ASP VAL THR PHE GLY ASP ILE LEU ALA ALA SEQRES 20 A 312 ARG CYS VAL PHE THR GLY GLU GLY ARG THR GLU ALA THR SEQRES 21 A 312 HIS ILE GLY GLY THR SER SER ASP GLU MET CYS ASN LEU SEQRES 22 A 312 TYR ILE MET TYR TYR MET GLU ALA LYS TYR ALA LEU SER SEQRES 23 A 312 PHE MET THR CYS THR LYS ASN VAL ALA PRO ASP MET PHE SEQRES 24 A 312 ARG THR ILE PRO ALA GLU ALA ASN ILE PRO ILE PRO VAL SEQRES 1 C 312 ASN GLU CYS LEU GLY THR ILE GLY PRO VAL THR PRO LEU SEQRES 2 C 312 ASP ALA SER ASP PHE ALA LEU ASP ILE ARG MET PRO GLY SEQRES 3 C 312 VAL THR PRO LYS GLU SER ASP THR TYR PHE CYS MET SER SEQRES 4 C 312 MET ARG LEU PRO VAL ASP GLU GLU ALA PHE VAL ILE ASP SEQRES 5 C 312 PHE LYS PRO ARG ALA SER MET ASP THR VAL HIS ALA MET SEQRES 6 C 312 LEU LEU PHE GLY CYS ASN MET PRO SER SER THR GLY SER SEQRES 7 C 312 TYR TRP PHE CYS ASP GLU GLY THR CYS THR ASP LYS ALA SEQRES 8 C 312 ASN ILE LEU TYR ALA TRP ALA ARG ASN ALA PRO PRO THR SEQRES 9 C 312 ARG LEU PRO LYS GLY VAL GLY PHE ARG VAL GLY GLY GLU SEQRES 10 C 312 THR GLY SER LYS TYR PHE VAL LEU GLN VAL HIS TYR GLY SEQRES 11 C 312 ASP ILE SER ALA PHE ARG ASP ASN HIS LYS ASP CYS SER SEQRES 12 C 312 GLY VAL SER VAL HIS LEU THR ARG VAL PRO GLN PRO LEU SEQRES 13 C 312 ILE ALA GLY MET TYR LEU MET MET SER VAL ASP THR VAL SEQRES 14 C 312 ILE PRO PRO GLY GLU LYS VAL VAL ASN ALA ASP ILE SER SEQRES 15 C 312 CYS GLN TYR LYS MET TYR PRO MET HIS VAL PHE ALA TYR SEQRES 16 C 312 ARG VAL HIS THR HIS HIS LEU GLY LYS VAL VAL SER GLY SEQRES 17 C 312 TYR ARG VAL ARG ASN GLY GLN TRP THR LEU ILE GLY ARG SEQRES 18 C 312 GLN ASN PRO GLN LEU PRO GLN ALA PHE TYR PRO VAL GLU SEQRES 19 C 312 HIS PRO VAL ASP VAL THR PHE GLY ASP ILE LEU ALA ALA SEQRES 20 C 312 ARG CYS VAL PHE THR GLY GLU GLY ARG THR GLU ALA THR SEQRES 21 C 312 HIS ILE GLY GLY THR SER SER ASP GLU MET CYS ASN LEU SEQRES 22 C 312 TYR ILE MET TYR TYR MET GLU ALA LYS TYR ALA LEU SER SEQRES 23 C 312 PHE MET THR CYS THR LYS ASN VAL ALA PRO ASP MET PHE SEQRES 24 C 312 ARG THR ILE PRO ALA GLU ALA ASN ILE PRO ILE PRO VAL HET CU A1001 1 HET FLC A1002 13 HET GOL A1003 6 HET GOL A1004 6 HET GOL A1005 6 HET GOL A1006 6 HET GOL A1007 6 HET GOL A1008 6 HET GOL A1009 6 HET CU C1001 1 HET FLC C1002 13 HET GOL C1003 6 HET GOL C1004 6 HET GOL C1005 6 HET GOL C1006 6 HET GOL C1007 6 HET GOL C1008 6 HETNAM CU COPPER (II) ION HETNAM FLC CITRATE ANION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CU 2(CU 2+) FORMUL 4 FLC 2(C6 H5 O7 3-) FORMUL 5 GOL 13(C3 H8 O3) FORMUL 20 HOH *190(H2 O) HELIX 1 AA1 ASP A 127 GLY A 129 5 3 HELIX 2 AA2 ASP A 175 ARG A 180 5 6 HELIX 3 AA3 LYS A 326 ALA A 328 5 3 HELIX 4 AA4 ALA A 339 ILE A 346 5 8 HELIX 5 AA5 PRO A 347 ILE A 352 5 6 HELIX 6 AA6 ASP C 127 GLY C 129 5 3 HELIX 7 AA7 ASP C 175 ARG C 180 5 6 HELIX 8 AA8 LYS C 326 ALA C 328 5 3 HELIX 9 AA9 ALA C 339 ILE C 346 5 8 HELIX 10 AB1 PRO C 347 ILE C 352 5 6 SHEET 1 AA1 8 ASP A 61 ARG A 67 0 SHEET 2 AA1 8 GLY A 188 THR A 194 -1 O VAL A 189 N ILE A 66 SHEET 3 AA1 8 ALA A 92 ARG A 100 -1 N ARG A 100 O GLY A 188 SHEET 4 AA1 8 VAL A 154 VAL A 158 -1 O PHE A 156 N VAL A 94 SHEET 5 AA1 8 LEU A 200 MET A 208 1 O ALA A 202 N GLY A 155 SHEET 6 AA1 8 ASN A 316 GLU A 324 -1 O LEU A 317 N MET A 207 SHEET 7 AA1 8 MET A 234 HIS A 242 -1 N ALA A 238 O MET A 320 SHEET 8 AA1 8 TYR A 275 VAL A 283 -1 O VAL A 277 N PHE A 237 SHEET 1 AA2 5 THR A 148 ARG A 149 0 SHEET 2 AA2 5 ALA A 92 ARG A 100 -1 N PHE A 97 O THR A 148 SHEET 3 AA2 5 VAL A 154 VAL A 158 -1 O PHE A 156 N VAL A 94 SHEET 4 AA2 5 LEU A 200 MET A 208 1 O ALA A 202 N GLY A 155 SHEET 5 AA2 5 PHE A 331 CYS A 334 1 O CYS A 334 N MET A 208 SHEET 1 AA3 5 TRP A 124 PHE A 125 0 SHEET 2 AA3 5 TYR A 79 ARG A 85 -1 N CYS A 81 O TRP A 124 SHEET 3 AA3 5 TYR A 166 TYR A 173 -1 O VAL A 171 N PHE A 80 SHEET 4 AA3 5 VAL A 106 CYS A 114 -1 N ALA A 108 O HIS A 172 SHEET 5 AA3 5 ASN A 136 TRP A 141 -1 O LEU A 138 N LEU A 111 SHEET 1 AA4 2 VAL A 213 ILE A 214 0 SHEET 2 AA4 2 THR A 304 HIS A 305 -1 O THR A 304 N ILE A 214 SHEET 1 AA5 4 VAL A 221 GLN A 228 0 SHEET 2 AA5 4 ILE A 288 PHE A 295 -1 O PHE A 295 N VAL A 221 SHEET 3 AA5 4 GLY A 247 ARG A 256 -1 N TYR A 253 O ALA A 290 SHEET 4 AA5 4 GLN A 259 GLN A 266 -1 O ILE A 263 N GLY A 252 SHEET 1 AA6 9 VAL C 54 PRO C 56 0 SHEET 2 AA6 9 ASP C 61 ARG C 67 -1 O ALA C 63 N THR C 55 SHEET 3 AA6 9 GLY C 188 THR C 194 -1 O VAL C 189 N ILE C 66 SHEET 4 AA6 9 ALA C 92 ARG C 100 -1 N LYS C 98 O SER C 190 SHEET 5 AA6 9 VAL C 154 VAL C 158 -1 O VAL C 158 N ALA C 92 SHEET 6 AA6 9 LEU C 200 MET C 208 1 O ALA C 202 N GLY C 155 SHEET 7 AA6 9 ASN C 316 GLU C 324 -1 O LEU C 317 N MET C 207 SHEET 8 AA6 9 MET C 234 HIS C 242 -1 N ARG C 240 O TYR C 318 SHEET 9 AA6 9 TYR C 275 VAL C 283 -1 O VAL C 283 N MET C 234 SHEET 1 AA7 5 THR C 148 ARG C 149 0 SHEET 2 AA7 5 ALA C 92 ARG C 100 -1 N PHE C 97 O THR C 148 SHEET 3 AA7 5 VAL C 154 VAL C 158 -1 O VAL C 158 N ALA C 92 SHEET 4 AA7 5 LEU C 200 MET C 208 1 O ALA C 202 N GLY C 155 SHEET 5 AA7 5 PHE C 331 CYS C 334 1 O CYS C 334 N MET C 208 SHEET 1 AA8 5 TRP C 124 PHE C 125 0 SHEET 2 AA8 5 TYR C 79 ARG C 85 -1 N CYS C 81 O TRP C 124 SHEET 3 AA8 5 TYR C 166 TYR C 173 -1 O PHE C 167 N MET C 84 SHEET 4 AA8 5 VAL C 106 CYS C 114 -1 N ALA C 108 O HIS C 172 SHEET 5 AA8 5 ASN C 136 TRP C 141 -1 O TYR C 139 N LEU C 111 SHEET 1 AA9 2 VAL C 213 ILE C 214 0 SHEET 2 AA9 2 THR C 304 HIS C 305 -1 O THR C 304 N ILE C 214 SHEET 1 AB1 4 VAL C 221 GLN C 228 0 SHEET 2 AB1 4 ILE C 288 PHE C 295 -1 O PHE C 295 N VAL C 221 SHEET 3 AB1 4 GLY C 247 ARG C 256 -1 N TYR C 253 O ALA C 290 SHEET 4 AB1 4 GLN C 259 GLN C 266 -1 O GLY C 264 N GLY C 252 SSBOND 1 CYS A 81 CYS A 126 1555 1555 2.09 SSBOND 2 CYS A 114 CYS A 131 1555 1555 2.08 SSBOND 3 CYS A 227 CYS A 334 1555 1555 2.06 SSBOND 4 CYS A 293 CYS A 315 1555 1555 2.02 SSBOND 5 CYS C 81 CYS C 126 1555 1555 2.10 SSBOND 6 CYS C 114 CYS C 131 1555 1555 2.13 SSBOND 7 CYS C 227 CYS C 334 1555 1555 2.09 SSBOND 8 CYS C 293 CYS C 315 1555 1555 2.00 LINK NE2 HIS A 107 CU CU A1001 1555 1555 2.22 LINK NE2 HIS A 242 CU CU A1001 1555 1555 2.33 LINK NE2 HIS A 244 CU CU A1001 1555 1555 2.21 LINK CU CU A1001 OB1 FLC A1002 1555 1555 2.01 LINK CU CU A1001 OHB FLC A1002 1555 1555 2.46 LINK NE2 HIS C 107 CU CU C1001 1555 1555 2.36 LINK NE2 HIS C 242 CU CU C1001 1555 1555 2.31 LINK NE2 HIS C 244 CU CU C1001 1555 1555 2.23 LINK CU CU C1001 OA2 FLC C1002 1555 1555 1.94 SITE 1 AC1 4 HIS A 107 HIS A 242 HIS A 244 FLC A1002 SITE 1 AC2 15 TYR A 79 HIS A 107 ALA A 108 LEU A 110 SITE 2 AC2 15 GLN A 170 HIS A 172 ARG A 240 HIS A 242 SITE 3 AC2 15 HIS A 244 MET A 314 ASN A 316 TYR A 318 SITE 4 AC2 15 CU A1001 GOL A1006 HOH A1140 SITE 1 AC3 7 TYR A 205 GLN A 228 TYR A 229 LYS A 230 SITE 2 AC3 7 MET A 231 MET A 332 THR A 333 SITE 1 AC4 4 VAL A 255 ASN A 257 GLY A 258 GLY A 286 SITE 1 AC5 10 ARG A 143 ASN A 144 GLN A 269 LEU A 270 SITE 2 AC5 10 PRO A 271 MET C 103 ARG C 143 ASN C 144 SITE 3 AC5 10 GLN C 269 PRO C 271 SITE 1 AC6 5 LEU A 110 ASN A 316 TYR A 318 FLC A1002 SITE 2 AC6 5 HOH A1166 SITE 1 AC7 7 GLY A 113 ASN A 136 LEU A 138 ARG A 157 SITE 2 AC7 7 SER A 164 ALA A 202 SER A 330 SITE 1 AC8 10 VAL A 210 THR A 212 LYS A 230 MET A 231 SITE 2 AC8 10 TYR A 232 PRO A 233 HIS A 305 ILE A 306 SITE 3 AC8 10 HOH A1102 HOH A1122 SITE 1 AC9 2 HOH A1111 HOH A1127 SITE 1 AD1 4 HIS C 107 HIS C 242 HIS C 244 FLC C1002 SITE 1 AD2 14 TYR C 79 ALA C 108 LEU C 110 GLN C 170 SITE 2 AD2 14 HIS C 172 ARG C 240 HIS C 242 HIS C 244 SITE 3 AD2 14 GLY C 307 MET C 314 TYR C 318 CU C1001 SITE 4 AD2 14 GOL C1003 HOH C1109 SITE 1 AD3 5 MET C 208 MET C 314 ASN C 316 TYR C 318 SITE 2 AD3 5 FLC C1002 SITE 1 AD4 4 ARG C 292 PRO C 340 PHE C 343 HOH C1107 SITE 1 AD5 6 TYR C 205 GLN C 228 LYS C 230 MET C 231 SITE 2 AD5 6 THR C 333 GOL C1006 SITE 1 AD6 3 MET C 332 THR C 333 GOL C1005 SITE 1 AD7 3 ARG C 254 VAL C 281 ASP C 282 SITE 1 AD8 8 VAL C 210 THR C 212 VAL C 213 MET C 231 SITE 2 AD8 8 TYR C 232 HIS C 305 ILE C 306 HOH C1115 CRYST1 171.370 52.462 116.457 90.00 128.74 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005835 0.000000 0.004682 0.00000 SCALE2 0.000000 0.019061 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011009 0.00000