HEADER DNA BINDING PROTEIN/DNA 09-AUG-17 6AMA TITLE STRUCTURE OF S. COELICOLOR/S. VENEZUELAE BLDC-SMEA-SSFA COMPLEX TO TITLE 2 3.09 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DNA-BINDING PROTEIN; COMPND 3 CHAIN: A, B, G, H, K, L, Y, C, D, O, P; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (99-MER); COMPND 7 CHAIN: N; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (99-MER); COMPND 11 CHAIN: R; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES VENEZUELAE; SOURCE 3 ORGANISM_TAXID: 54571; SOURCE 4 GENE: AQF52_4259; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS BLDC, S. COELICOLOR, DEVELOPMENTAL SWITCH, MERR-LIKE, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER REVDAT 3 04-OCT-23 6AMA 1 REMARK REVDAT 2 04-APR-18 6AMA 1 JRNL REVDAT 1 28-MAR-18 6AMA 0 JRNL AUTH M.A.SCHUMACHER,C.D.DEN HENGST,M.J.BUSH,T.B.K.LE,N.T.TRAN, JRNL AUTH 2 G.CHANDRA,W.ZENG,B.TRAVIS,R.G.BRENNAN,M.J.BUTTNER JRNL TITL THE MERR-LIKE PROTEIN BLDC BINDS DNA DIRECT REPEATS AS JRNL TITL 2 COOPERATIVE MULTIMERS TO REGULATE STREPTOMYCES DEVELOPMENT. JRNL REF NAT COMMUN V. 9 1139 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29556010 JRNL DOI 10.1038/S41467-018-03576-3 REMARK 2 REMARK 2 RESOLUTION. 3.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 101.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.120 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 57925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.360 REMARK 3 FREE R VALUE TEST SET COUNT : 3686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1101.1698 - 6.6567 0.93 5160 350 0.1520 0.1957 REMARK 3 2 6.6567 - 5.2837 0.96 5333 361 0.2041 0.3144 REMARK 3 3 5.2837 - 4.6158 0.98 5423 356 0.1801 0.2646 REMARK 3 4 4.6158 - 4.1937 0.98 5404 377 0.1901 0.2745 REMARK 3 5 4.1937 - 3.8931 0.99 5486 371 0.2139 0.3073 REMARK 3 6 3.8931 - 3.6636 0.99 5504 377 0.2688 0.3709 REMARK 3 7 3.6636 - 3.4801 1.00 5471 376 0.2955 0.3651 REMARK 3 8 3.4801 - 3.3286 1.00 5504 374 0.3550 0.3814 REMARK 3 9 3.3286 - 3.2005 1.00 5531 378 0.3849 0.4290 REMARK 3 10 3.2005 - 3.0900 0.98 5423 366 0.3936 0.4201 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 93.42 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.530 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 122.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 148.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 9319 REMARK 3 ANGLE : 0.838 13476 REMARK 3 CHIRALITY : 0.042 1548 REMARK 3 PLANARITY : 0.003 1008 REMARK 3 DIHEDRAL : 24.515 3795 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 9.5108 -30.2892 -16.5929 REMARK 3 T TENSOR REMARK 3 T11: 0.7577 T22: 0.6983 REMARK 3 T33: 0.6552 T12: 0.0722 REMARK 3 T13: -0.0153 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.7120 L22: 1.6666 REMARK 3 L33: 0.0522 L12: 1.6605 REMARK 3 L13: 0.1721 L23: 0.0249 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: -0.1035 S13: -0.0586 REMARK 3 S21: -0.0689 S22: -0.0621 S23: -0.0127 REMARK 3 S31: -0.0663 S32: 0.0125 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AMA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61611 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.090 REMARK 200 RESOLUTION RANGE LOW (A) : 101.116 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11800 REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6AMK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG 400, 0.1 M CACL2, 0.1 M HEPES REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.41450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.70725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 98.12175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.41450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 98.12175 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 32.70725 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIDECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G, H, K, L, Y, C, D, O, REMARK 350 AND CHAINS: P, N, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 ARG A 4 REMARK 465 THR A 5 REMARK 465 PRO A 6 REMARK 465 ASP A 7 REMARK 465 ALA A 8 REMARK 465 GLN A 63 REMARK 465 GLN A 64 REMARK 465 ARG A 65 REMARK 465 SER A 66 REMARK 465 GLU A 67 REMARK 465 ALA A 68 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 ARG B 4 REMARK 465 THR B 5 REMARK 465 PRO B 6 REMARK 465 ASP B 7 REMARK 465 GLN B 63 REMARK 465 GLN B 64 REMARK 465 ARG B 65 REMARK 465 SER B 66 REMARK 465 GLU B 67 REMARK 465 ALA B 68 REMARK 465 GLY G -2 REMARK 465 SER G -1 REMARK 465 HIS G 0 REMARK 465 MET G 1 REMARK 465 THR G 2 REMARK 465 ALA G 3 REMARK 465 ARG G 4 REMARK 465 THR G 5 REMARK 465 PRO G 6 REMARK 465 ASP G 7 REMARK 465 ALA G 8 REMARK 465 GLN G 63 REMARK 465 GLN G 64 REMARK 465 ARG G 65 REMARK 465 SER G 66 REMARK 465 GLU G 67 REMARK 465 ALA G 68 REMARK 465 GLY H -2 REMARK 465 SER H -1 REMARK 465 HIS H 0 REMARK 465 MET H 1 REMARK 465 THR H 2 REMARK 465 ALA H 3 REMARK 465 ARG H 4 REMARK 465 THR H 5 REMARK 465 PRO H 6 REMARK 465 ASP H 7 REMARK 465 ALA H 8 REMARK 465 GLN H 64 REMARK 465 ARG H 65 REMARK 465 SER H 66 REMARK 465 GLU H 67 REMARK 465 ALA H 68 REMARK 465 GLY K -2 REMARK 465 SER K -1 REMARK 465 HIS K 0 REMARK 465 MET K 1 REMARK 465 THR K 2 REMARK 465 ALA K 3 REMARK 465 ARG K 4 REMARK 465 THR K 5 REMARK 465 PRO K 6 REMARK 465 ASP K 7 REMARK 465 ALA K 8 REMARK 465 GLN K 63 REMARK 465 GLN K 64 REMARK 465 ARG K 65 REMARK 465 SER K 66 REMARK 465 GLU K 67 REMARK 465 ALA K 68 REMARK 465 GLY L -2 REMARK 465 SER L -1 REMARK 465 HIS L 0 REMARK 465 MET L 1 REMARK 465 THR L 2 REMARK 465 ALA L 3 REMARK 465 ARG L 4 REMARK 465 THR L 5 REMARK 465 PRO L 6 REMARK 465 ASP L 7 REMARK 465 ALA L 8 REMARK 465 GLN L 63 REMARK 465 GLN L 64 REMARK 465 ARG L 65 REMARK 465 SER L 66 REMARK 465 GLU L 67 REMARK 465 ALA L 68 REMARK 465 GLY Y -2 REMARK 465 SER Y -1 REMARK 465 HIS Y 0 REMARK 465 MET Y 1 REMARK 465 THR Y 2 REMARK 465 ALA Y 3 REMARK 465 ARG Y 4 REMARK 465 THR Y 5 REMARK 465 GLN Y 63 REMARK 465 GLN Y 64 REMARK 465 ARG Y 65 REMARK 465 SER Y 66 REMARK 465 GLU Y 67 REMARK 465 ALA Y 68 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 ALA C 3 REMARK 465 ARG C 4 REMARK 465 THR C 5 REMARK 465 PRO C 6 REMARK 465 ASP C 7 REMARK 465 ALA C 8 REMARK 465 GLN C 63 REMARK 465 GLN C 64 REMARK 465 ARG C 65 REMARK 465 SER C 66 REMARK 465 GLU C 67 REMARK 465 ALA C 68 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ALA D 3 REMARK 465 ARG D 4 REMARK 465 THR D 5 REMARK 465 PRO D 6 REMARK 465 ASP D 7 REMARK 465 ALA D 8 REMARK 465 GLN D 63 REMARK 465 GLN D 64 REMARK 465 ARG D 65 REMARK 465 SER D 66 REMARK 465 GLU D 67 REMARK 465 ALA D 68 REMARK 465 GLY O -2 REMARK 465 SER O -1 REMARK 465 HIS O 0 REMARK 465 MET O 1 REMARK 465 THR O 2 REMARK 465 ALA O 3 REMARK 465 ARG O 4 REMARK 465 THR O 5 REMARK 465 PRO O 6 REMARK 465 ASP O 7 REMARK 465 ALA O 8 REMARK 465 GLN O 64 REMARK 465 ARG O 65 REMARK 465 SER O 66 REMARK 465 GLU O 67 REMARK 465 ALA O 68 REMARK 465 GLY P -2 REMARK 465 SER P -1 REMARK 465 HIS P 0 REMARK 465 MET P 1 REMARK 465 THR P 2 REMARK 465 ALA P 3 REMARK 465 ARG P 4 REMARK 465 THR P 5 REMARK 465 PRO P 6 REMARK 465 GLN P 63 REMARK 465 GLN P 64 REMARK 465 ARG P 65 REMARK 465 SER P 66 REMARK 465 GLU P 67 REMARK 465 ALA P 68 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 9 CG CD OE1 OE2 REMARK 470 GLU K 9 CG CD OE1 OE2 REMARK 470 GLU L 9 CG CD OE1 OE2 REMARK 470 GLU C 9 CG CD OE1 OE2 REMARK 470 GLU D 9 CG CD OE1 OE2 REMARK 470 GLU O 9 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS P 26 O6 DG R 105 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC N 75 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC N 110 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT N 115 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC N 129 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT N 143 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT N 152 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA N 159 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT N 160 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG R 15 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG R 16 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DG R 34 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 DG R 34 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG R 44 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG R 53 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG R 61 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG R 61 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG R 62 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT R 67 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DT R 67 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG R 96 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG R 97 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT R 99 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG R 106 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 22 73.80 45.91 REMARK 500 THR A 42 -174.56 -62.34 REMARK 500 LEU L 43 10.96 -68.17 REMARK 500 LYS Y 33 5.49 -69.99 REMARK 500 ARG C 22 66.04 66.37 REMARK 500 LYS C 36 2.05 -68.95 REMARK 500 LEU O 37 110.07 -161.00 REMARK 500 ARG O 48 129.48 -171.06 REMARK 500 LYS P 26 0.54 -64.10 REMARK 500 LYS P 33 3.27 -68.56 REMARK 500 REMARK 500 REMARK: NULL DBREF1 6AMA A 1 68 UNP A0A0M7QSG5_STRVZ DBREF2 6AMA A A0A0M7QSG5 1 68 DBREF1 6AMA B 1 68 UNP A0A0M7QSG5_STRVZ DBREF2 6AMA B A0A0M7QSG5 1 68 DBREF1 6AMA G 1 68 UNP A0A0M7QSG5_STRVZ DBREF2 6AMA G A0A0M7QSG5 1 68 DBREF1 6AMA H 1 68 UNP A0A0M7QSG5_STRVZ DBREF2 6AMA H A0A0M7QSG5 1 68 DBREF1 6AMA K 1 68 UNP A0A0M7QSG5_STRVZ DBREF2 6AMA K A0A0M7QSG5 1 68 DBREF1 6AMA L 1 68 UNP A0A0M7QSG5_STRVZ DBREF2 6AMA L A0A0M7QSG5 1 68 DBREF1 6AMA Y 1 68 UNP A0A0M7QSG5_STRVZ DBREF2 6AMA Y A0A0M7QSG5 1 68 DBREF1 6AMA C 1 68 UNP A0A0M7QSG5_STRVZ DBREF2 6AMA C A0A0M7QSG5 1 68 DBREF1 6AMA D 1 68 UNP A0A0M7QSG5_STRVZ DBREF2 6AMA D A0A0M7QSG5 1 68 DBREF1 6AMA O 1 68 UNP A0A0M7QSG5_STRVZ DBREF2 6AMA O A0A0M7QSG5 1 68 DBREF1 6AMA P 1 68 UNP A0A0M7QSG5_STRVZ DBREF2 6AMA P A0A0M7QSG5 1 68 DBREF 6AMA N 71 169 PDB 6AMA 6AMA 71 169 DBREF 6AMA R 11 109 PDB 6AMA 6AMA 11 109 SEQADV 6AMA GLY A -2 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA SER A -1 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA HIS A 0 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA GLY B -2 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA SER B -1 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA HIS B 0 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA GLY G -2 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA SER G -1 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA HIS G 0 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA GLY H -2 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA SER H -1 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA HIS H 0 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA GLY K -2 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA SER K -1 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA HIS K 0 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA GLY L -2 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA SER L -1 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA HIS L 0 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA GLY Y -2 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA SER Y -1 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA HIS Y 0 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA GLY C -2 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA SER C -1 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA HIS C 0 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA GLY D -2 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA SER D -1 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA HIS D 0 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA GLY O -2 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA SER O -1 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA HIS O 0 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA GLY P -2 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA SER P -1 UNP A0A0M7QSG EXPRESSION TAG SEQADV 6AMA HIS P 0 UNP A0A0M7QSG EXPRESSION TAG SEQRES 1 A 71 GLY SER HIS MET THR ALA ARG THR PRO ASP ALA GLU PRO SEQRES 2 A 71 LEU LEU THR PRO ALA GLU VAL ALA THR MET PHE ARG VAL SEQRES 3 A 71 ASP PRO LYS THR VAL THR ARG TRP ALA LYS ALA GLY LYS SEQRES 4 A 71 LEU THR SER ILE ARG THR LEU GLY GLY HIS ARG ARG TYR SEQRES 5 A 71 ARG GLU ALA GLU VAL ARG ALA LEU LEU ALA GLY ILE PRO SEQRES 6 A 71 GLN GLN ARG SER GLU ALA SEQRES 1 B 71 GLY SER HIS MET THR ALA ARG THR PRO ASP ALA GLU PRO SEQRES 2 B 71 LEU LEU THR PRO ALA GLU VAL ALA THR MET PHE ARG VAL SEQRES 3 B 71 ASP PRO LYS THR VAL THR ARG TRP ALA LYS ALA GLY LYS SEQRES 4 B 71 LEU THR SER ILE ARG THR LEU GLY GLY HIS ARG ARG TYR SEQRES 5 B 71 ARG GLU ALA GLU VAL ARG ALA LEU LEU ALA GLY ILE PRO SEQRES 6 B 71 GLN GLN ARG SER GLU ALA SEQRES 1 G 71 GLY SER HIS MET THR ALA ARG THR PRO ASP ALA GLU PRO SEQRES 2 G 71 LEU LEU THR PRO ALA GLU VAL ALA THR MET PHE ARG VAL SEQRES 3 G 71 ASP PRO LYS THR VAL THR ARG TRP ALA LYS ALA GLY LYS SEQRES 4 G 71 LEU THR SER ILE ARG THR LEU GLY GLY HIS ARG ARG TYR SEQRES 5 G 71 ARG GLU ALA GLU VAL ARG ALA LEU LEU ALA GLY ILE PRO SEQRES 6 G 71 GLN GLN ARG SER GLU ALA SEQRES 1 H 71 GLY SER HIS MET THR ALA ARG THR PRO ASP ALA GLU PRO SEQRES 2 H 71 LEU LEU THR PRO ALA GLU VAL ALA THR MET PHE ARG VAL SEQRES 3 H 71 ASP PRO LYS THR VAL THR ARG TRP ALA LYS ALA GLY LYS SEQRES 4 H 71 LEU THR SER ILE ARG THR LEU GLY GLY HIS ARG ARG TYR SEQRES 5 H 71 ARG GLU ALA GLU VAL ARG ALA LEU LEU ALA GLY ILE PRO SEQRES 6 H 71 GLN GLN ARG SER GLU ALA SEQRES 1 K 71 GLY SER HIS MET THR ALA ARG THR PRO ASP ALA GLU PRO SEQRES 2 K 71 LEU LEU THR PRO ALA GLU VAL ALA THR MET PHE ARG VAL SEQRES 3 K 71 ASP PRO LYS THR VAL THR ARG TRP ALA LYS ALA GLY LYS SEQRES 4 K 71 LEU THR SER ILE ARG THR LEU GLY GLY HIS ARG ARG TYR SEQRES 5 K 71 ARG GLU ALA GLU VAL ARG ALA LEU LEU ALA GLY ILE PRO SEQRES 6 K 71 GLN GLN ARG SER GLU ALA SEQRES 1 L 71 GLY SER HIS MET THR ALA ARG THR PRO ASP ALA GLU PRO SEQRES 2 L 71 LEU LEU THR PRO ALA GLU VAL ALA THR MET PHE ARG VAL SEQRES 3 L 71 ASP PRO LYS THR VAL THR ARG TRP ALA LYS ALA GLY LYS SEQRES 4 L 71 LEU THR SER ILE ARG THR LEU GLY GLY HIS ARG ARG TYR SEQRES 5 L 71 ARG GLU ALA GLU VAL ARG ALA LEU LEU ALA GLY ILE PRO SEQRES 6 L 71 GLN GLN ARG SER GLU ALA SEQRES 1 Y 71 GLY SER HIS MET THR ALA ARG THR PRO ASP ALA GLU PRO SEQRES 2 Y 71 LEU LEU THR PRO ALA GLU VAL ALA THR MET PHE ARG VAL SEQRES 3 Y 71 ASP PRO LYS THR VAL THR ARG TRP ALA LYS ALA GLY LYS SEQRES 4 Y 71 LEU THR SER ILE ARG THR LEU GLY GLY HIS ARG ARG TYR SEQRES 5 Y 71 ARG GLU ALA GLU VAL ARG ALA LEU LEU ALA GLY ILE PRO SEQRES 6 Y 71 GLN GLN ARG SER GLU ALA SEQRES 1 C 71 GLY SER HIS MET THR ALA ARG THR PRO ASP ALA GLU PRO SEQRES 2 C 71 LEU LEU THR PRO ALA GLU VAL ALA THR MET PHE ARG VAL SEQRES 3 C 71 ASP PRO LYS THR VAL THR ARG TRP ALA LYS ALA GLY LYS SEQRES 4 C 71 LEU THR SER ILE ARG THR LEU GLY GLY HIS ARG ARG TYR SEQRES 5 C 71 ARG GLU ALA GLU VAL ARG ALA LEU LEU ALA GLY ILE PRO SEQRES 6 C 71 GLN GLN ARG SER GLU ALA SEQRES 1 D 71 GLY SER HIS MET THR ALA ARG THR PRO ASP ALA GLU PRO SEQRES 2 D 71 LEU LEU THR PRO ALA GLU VAL ALA THR MET PHE ARG VAL SEQRES 3 D 71 ASP PRO LYS THR VAL THR ARG TRP ALA LYS ALA GLY LYS SEQRES 4 D 71 LEU THR SER ILE ARG THR LEU GLY GLY HIS ARG ARG TYR SEQRES 5 D 71 ARG GLU ALA GLU VAL ARG ALA LEU LEU ALA GLY ILE PRO SEQRES 6 D 71 GLN GLN ARG SER GLU ALA SEQRES 1 O 71 GLY SER HIS MET THR ALA ARG THR PRO ASP ALA GLU PRO SEQRES 2 O 71 LEU LEU THR PRO ALA GLU VAL ALA THR MET PHE ARG VAL SEQRES 3 O 71 ASP PRO LYS THR VAL THR ARG TRP ALA LYS ALA GLY LYS SEQRES 4 O 71 LEU THR SER ILE ARG THR LEU GLY GLY HIS ARG ARG TYR SEQRES 5 O 71 ARG GLU ALA GLU VAL ARG ALA LEU LEU ALA GLY ILE PRO SEQRES 6 O 71 GLN GLN ARG SER GLU ALA SEQRES 1 P 71 GLY SER HIS MET THR ALA ARG THR PRO ASP ALA GLU PRO SEQRES 2 P 71 LEU LEU THR PRO ALA GLU VAL ALA THR MET PHE ARG VAL SEQRES 3 P 71 ASP PRO LYS THR VAL THR ARG TRP ALA LYS ALA GLY LYS SEQRES 4 P 71 LEU THR SER ILE ARG THR LEU GLY GLY HIS ARG ARG TYR SEQRES 5 P 71 ARG GLU ALA GLU VAL ARG ALA LEU LEU ALA GLY ILE PRO SEQRES 6 P 71 GLN GLN ARG SER GLU ALA SEQRES 1 N 99 DT DA DC DC DC DG DA DA DT DT DA DC DC SEQRES 2 N 99 DC DG DA DA DT DT DA DC DC DC DG DA DA SEQRES 3 N 99 DT DT DA DC DC DC DG DA DA DT DT DA DC SEQRES 4 N 99 DC DC DG DA DA DT DT DA DC DC DC DG DA SEQRES 5 N 99 DA DT DT DA DC DC DC DG DA DA DT DT DA SEQRES 6 N 99 DC DC DC DG DA DA DT DT DA DC DC DC DG SEQRES 7 N 99 DA DA DT DT DA DC DC DC DG DA DA DT DT SEQRES 8 N 99 DA DC DC DC DG DA DA DT SEQRES 1 R 99 DA DT DT DC DG DG DG DT DA DA DT DT DC SEQRES 2 R 99 DG DG DG DT DA DA DT DT DC DG DG DG DT SEQRES 3 R 99 DA DA DT DT DC DG DG DG DT DA DA DT DT SEQRES 4 R 99 DC DG DG DG DT DA DA DT DT DC DG DG DG SEQRES 5 R 99 DT DA DA DT DT DC DG DG DG DT DA DA DT SEQRES 6 R 99 DT DC DG DG DG DT DA DA DT DT DC DG DG SEQRES 7 R 99 DG DT DA DA DT DT DC DG DG DG DT DA DA SEQRES 8 R 99 DT DT DC DG DG DG DT DA HELIX 1 AA1 THR A 13 ARG A 22 1 10 HELIX 2 AA2 ASP A 24 GLY A 35 1 12 HELIX 3 AA3 GLU A 51 GLY A 60 1 10 HELIX 4 AA4 THR B 13 PHE B 21 1 9 HELIX 5 AA5 ASP B 24 GLY B 35 1 12 HELIX 6 AA6 GLU B 51 GLY B 60 1 10 HELIX 7 AA7 THR G 13 ARG G 22 1 10 HELIX 8 AA8 ASP G 24 ALA G 34 1 11 HELIX 9 AA9 GLU G 51 GLY G 60 1 10 HELIX 10 AB1 THR H 13 ARG H 22 1 10 HELIX 11 AB2 ASP H 24 ALA H 34 1 11 HELIX 12 AB3 GLU H 51 GLY H 60 1 10 HELIX 13 AB4 THR K 13 MET K 20 1 8 HELIX 14 AB5 ASP K 24 GLY K 35 1 12 HELIX 15 AB6 GLU K 51 GLY K 60 1 10 HELIX 16 AB7 THR L 13 ARG L 22 1 10 HELIX 17 AB8 ASP L 24 ALA L 34 1 11 HELIX 18 AB9 GLU L 51 GLY L 60 1 10 HELIX 19 AC1 THR Y 13 ARG Y 22 1 10 HELIX 20 AC2 ASP Y 24 LYS Y 33 1 10 HELIX 21 AC3 GLU Y 51 LEU Y 58 1 8 HELIX 22 AC4 THR C 13 ARG C 22 1 10 HELIX 23 AC5 ASP C 24 ALA C 34 1 11 HELIX 24 AC6 GLU C 51 ALA C 59 1 9 HELIX 25 AC7 THR D 13 PHE D 21 1 9 HELIX 26 AC8 ASP D 24 ALA D 34 1 11 HELIX 27 AC9 GLU D 51 ALA D 59 1 9 HELIX 28 AD1 THR O 13 MET O 20 1 8 HELIX 29 AD2 ASP O 24 ALA O 34 1 11 HELIX 30 AD3 GLU O 51 ALA O 59 1 9 HELIX 31 AD4 THR P 13 MET P 20 1 8 HELIX 32 AD5 ASP P 24 ALA P 34 1 11 HELIX 33 AD6 GLU P 51 ALA P 59 1 9 SHEET 1 AA1 2 LEU A 11 LEU A 12 0 SHEET 2 AA1 2 TYR A 49 ARG A 50 -1 O TYR A 49 N LEU A 12 SHEET 1 AA2 2 LEU B 11 LEU B 12 0 SHEET 2 AA2 2 TYR B 49 ARG B 50 -1 O TYR B 49 N LEU B 12 SHEET 1 AA3 3 LEU G 11 LEU G 12 0 SHEET 2 AA3 3 ARG G 47 ARG G 50 -1 O TYR G 49 N LEU G 12 SHEET 3 AA3 3 SER G 39 ARG G 41 -1 N ILE G 40 O ARG G 48 SHEET 1 AA4 2 LEU H 11 LEU H 12 0 SHEET 2 AA4 2 TYR H 49 ARG H 50 -1 O TYR H 49 N LEU H 12 SHEET 1 AA5 2 LEU K 11 LEU K 12 0 SHEET 2 AA5 2 TYR K 49 ARG K 50 -1 O TYR K 49 N LEU K 12 SHEET 1 AA6 3 LEU L 11 LEU L 12 0 SHEET 2 AA6 3 ARG L 47 ARG L 50 -1 O TYR L 49 N LEU L 12 SHEET 3 AA6 3 SER L 39 ARG L 41 -1 N ILE L 40 O ARG L 48 SHEET 1 AA7 3 LEU Y 11 LEU Y 12 0 SHEET 2 AA7 3 ARG Y 47 ARG Y 50 -1 O TYR Y 49 N LEU Y 12 SHEET 3 AA7 3 SER Y 39 ARG Y 41 -1 N ILE Y 40 O ARG Y 48 SHEET 1 AA8 2 LEU C 11 LEU C 12 0 SHEET 2 AA8 2 TYR C 49 ARG C 50 -1 O TYR C 49 N LEU C 12 SHEET 1 AA9 3 LEU D 11 LEU D 12 0 SHEET 2 AA9 3 ARG D 47 ARG D 50 -1 O TYR D 49 N LEU D 12 SHEET 3 AA9 3 SER D 39 ARG D 41 -1 N ILE D 40 O ARG D 48 SHEET 1 AB1 2 LEU O 11 LEU O 12 0 SHEET 2 AB1 2 TYR O 49 ARG O 50 -1 O TYR O 49 N LEU O 12 SHEET 1 AB2 3 LEU P 11 LEU P 12 0 SHEET 2 AB2 3 ARG P 47 ARG P 50 -1 O TYR P 49 N LEU P 12 SHEET 3 AB2 3 SER P 39 ARG P 41 -1 N ILE P 40 O ARG P 48 CRYST1 159.351 159.351 130.829 90.00 90.00 90.00 P 41 2 2 88 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006275 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006275 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007644 0.00000