HEADER SIGNALING PROTEIN 11-AUG-17 6AMW TITLE ABL1B REGULATORY MODULE 'ACTIVATING' CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ABL1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-255; COMPND 5 SYNONYM: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 1,ABELSON COMPND 6 TYROSINE-PROTEIN KINASE 1,PROTO-ONCOGENE C-ABL,P150; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABL1, ABL, JTK7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS SIGNALING PROTEIN KINASE, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.G.KALODIMOS,P.ROSSI,T.SALEH REVDAT 6 15-MAY-24 6AMW 1 REMARK REVDAT 5 14-JUN-23 6AMW 1 REMARK REVDAT 4 01-JAN-20 6AMW 1 REMARK REVDAT 3 22-NOV-17 6AMW 1 JRNL REVDAT 2 11-OCT-17 6AMW 1 JRNL REVDAT 1 27-SEP-17 6AMW 0 JRNL AUTH T.SALEH,P.ROSSI,C.G.KALODIMOS JRNL TITL ATOMIC VIEW OF THE ENERGY LANDSCAPE IN THE ALLOSTERIC JRNL TITL 2 REGULATION OF ABL KINASE. JRNL REF NAT. STRUCT. MOL. BIOL. V. 24 893 2017 JRNL REFN ESSN 1545-9985 JRNL PMID 28945248 JRNL DOI 10.1038/NSMB.3470 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AMW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000228881. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-99% 13C; U-99% 15N] REMARK 210 ABL1B, 20 MM POTASSIUM PHOSPHATE, REMARK 210 100 MM POTASSIUM CHLORIDE, 5 MM REMARK 210 BETA-MERCAPTOETHANOL, 0.05 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D HN(COCA)CB; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, PINE, SPARKY, TALOS REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 4 68.70 -158.86 REMARK 500 1 LEU A 9 93.58 63.25 REMARK 500 1 ARG A 14 71.71 52.05 REMARK 500 1 ALA A 26 -59.62 -138.36 REMARK 500 1 GLU A 30 80.38 61.62 REMARK 500 1 SER A 31 -60.60 -92.35 REMARK 500 1 SER A 32 138.04 -178.82 REMARK 500 1 HIS A 38 43.14 -96.76 REMARK 500 1 PHE A 42 140.96 -172.57 REMARK 500 1 GLU A 46 -168.77 -126.90 REMARK 500 1 PRO A 51 -139.65 -82.51 REMARK 500 1 GLU A 57 73.02 71.12 REMARK 500 1 SER A 62 94.05 -66.16 REMARK 500 1 ALA A 64 -89.27 -86.79 REMARK 500 1 ALA A 65 75.88 -167.89 REMARK 500 1 PRO A 77 -153.86 -95.86 REMARK 500 1 ASN A 80 26.90 -160.48 REMARK 500 1 ASN A 83 94.90 -56.36 REMARK 500 1 GLU A 117 -70.45 -67.65 REMARK 500 1 VAL A 138 -44.52 -131.13 REMARK 500 1 VAL A 247 -67.47 -129.58 REMARK 500 1 SER A 248 80.31 58.25 REMARK 500 1 TRP A 254 -77.50 -86.08 REMARK 500 2 ARG A 13 125.27 64.43 REMARK 500 2 ARG A 33 96.94 74.56 REMARK 500 2 PHE A 42 90.31 -69.81 REMARK 500 2 GLN A 49 -63.14 -143.82 REMARK 500 2 ARG A 50 105.10 59.06 REMARK 500 2 GLU A 57 76.93 67.17 REMARK 500 2 PRO A 58 96.86 -58.28 REMARK 500 2 ARG A 66 98.10 -66.95 REMARK 500 2 ASN A 68 78.77 62.46 REMARK 500 2 LYS A 70 127.15 -170.13 REMARK 500 2 GLU A 79 -76.13 -100.10 REMARK 500 2 ASN A 80 5.15 -171.47 REMARK 500 2 VAL A 205 -55.29 -135.54 REMARK 500 2 THR A 243 -72.81 -105.29 REMARK 500 3 GLN A 4 129.43 65.48 REMARK 500 3 ARG A 13 83.59 61.84 REMARK 500 3 ARG A 14 77.96 46.25 REMARK 500 3 ALA A 26 -23.21 -166.44 REMARK 500 3 ARG A 33 -156.88 -119.46 REMARK 500 3 PRO A 37 108.96 -51.93 REMARK 500 3 HIS A 38 10.35 -158.81 REMARK 500 3 GLU A 57 73.38 53.59 REMARK 500 3 PRO A 58 86.57 -62.39 REMARK 500 3 SER A 62 71.46 -172.74 REMARK 500 3 ALA A 64 73.51 -169.73 REMARK 500 3 LYS A 70 -59.03 -161.47 REMARK 500 3 SER A 78 95.31 -68.00 REMARK 500 REMARK 500 THIS ENTRY HAS 328 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 225 ASP A 226 1 -136.60 REMARK 500 ALA A 225 ASP A 226 2 -145.23 REMARK 500 ALA A 225 ASP A 226 3 -143.53 REMARK 500 ALA A 225 ASP A 226 4 -140.07 REMARK 500 ALA A 225 ASP A 226 5 -140.12 REMARK 500 ALA A 225 ASP A 226 6 -138.21 REMARK 500 ALA A 225 ASP A 226 7 -138.32 REMARK 500 ALA A 225 ASP A 226 8 -139.94 REMARK 500 ALA A 225 ASP A 226 9 -141.86 REMARK 500 ALA A 225 ASP A 226 10 -146.73 REMARK 500 ALA A 225 ASP A 226 11 -143.40 REMARK 500 ALA A 225 ASP A 226 12 -144.76 REMARK 500 ALA A 225 ASP A 226 13 -140.13 REMARK 500 ALA A 225 ASP A 226 14 -140.85 REMARK 500 ALA A 225 ASP A 226 15 -141.20 REMARK 500 ALA A 225 ASP A 226 16 -143.25 REMARK 500 ALA A 225 ASP A 226 17 -144.28 REMARK 500 ALA A 225 ASP A 226 18 -145.37 REMARK 500 ALA A 225 ASP A 226 19 -141.21 REMARK 500 ALA A 225 ASP A 226 20 -145.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30332 RELATED DB: BMRB REMARK 900 ABL1B REGULATORY MODULE 'ACTIVATING' CONFORMATION REMARK 900 RELATED ID: 6AMV RELATED DB: PDB REMARK 900 ABL 1B REGULATORY MODULE 'INHIBITING STATE DBREF 6AMW A 1 255 UNP P00519 ABL1_HUMAN 1 255 SEQADV 6AMW ARG A 29 UNP P00519 LYS 29 CONFLICT SEQADV 6AMW ALA A 119 UNP P00519 CYS 119 CONFLICT SEQRES 1 A 255 MET GLY GLN GLN PRO GLY LYS VAL LEU GLY ASP GLN ARG SEQRES 2 A 255 ARG PRO SER LEU PRO ALA LEU HIS PHE ILE LYS GLY ALA SEQRES 3 A 255 GLY LYS ARG GLU SER SER ARG HIS GLY GLY PRO HIS CYS SEQRES 4 A 255 ASN VAL PHE VAL GLU HIS GLU ALA LEU GLN ARG PRO VAL SEQRES 5 A 255 ALA SER ASP PHE GLU PRO GLN GLY LEU SER GLU ALA ALA SEQRES 6 A 255 ARG TRP ASN SER LYS GLU ASN LEU LEU ALA GLY PRO SER SEQRES 7 A 255 GLU ASN ASP PRO ASN LEU PHE VAL ALA LEU TYR ASP PHE SEQRES 8 A 255 VAL ALA SER GLY ASP ASN THR LEU SER ILE THR LYS GLY SEQRES 9 A 255 GLU LYS LEU ARG VAL LEU GLY TYR ASN HIS ASN GLY GLU SEQRES 10 A 255 TRP ALA GLU ALA GLN THR LYS ASN GLY GLN GLY TRP VAL SEQRES 11 A 255 PRO SER ASN TYR ILE THR PRO VAL ASN SER LEU GLU LYS SEQRES 12 A 255 HIS SER TRP TYR HIS GLY PRO VAL SER ARG ASN ALA ALA SEQRES 13 A 255 GLU TYR LEU LEU SER SER GLY ILE ASN GLY SER PHE LEU SEQRES 14 A 255 VAL ARG GLU SER GLU SER SER PRO GLY GLN ARG SER ILE SEQRES 15 A 255 SER LEU ARG TYR GLU GLY ARG VAL TYR HIS TYR ARG ILE SEQRES 16 A 255 ASN THR ALA SER ASP GLY LYS LEU TYR VAL SER SER GLU SEQRES 17 A 255 SER ARG PHE ASN THR LEU ALA GLU LEU VAL HIS HIS HIS SEQRES 18 A 255 SER THR VAL ALA ASP GLY LEU ILE THR THR LEU HIS TYR SEQRES 19 A 255 PRO ALA PRO LYS ARG ASN LYS PRO THR VAL TYR GLY VAL SEQRES 20 A 255 SER PRO ASN TYR ASP LYS TRP GLU HELIX 1 AA1 PRO A 131 ASN A 133 5 3 HELIX 2 AA2 SER A 140 HIS A 144 5 5 HELIX 3 AA3 SER A 152 SER A 161 1 10 HELIX 4 AA4 THR A 213 VAL A 224 1 12 SHEET 1 AA1 5 GLY A 126 VAL A 130 0 SHEET 2 AA1 5 ALA A 119 THR A 123 -1 N ALA A 119 O VAL A 130 SHEET 3 AA1 5 LYS A 106 TYR A 112 -1 N LEU A 110 O GLU A 120 SHEET 4 AA1 5 LEU A 84 ALA A 87 -1 N PHE A 85 O LEU A 107 SHEET 5 AA1 5 ILE A 135 PRO A 137 -1 O THR A 136 N VAL A 86 SHEET 1 AA2 5 TYR A 147 PRO A 150 0 SHEET 2 AA2 5 SER A 167 GLU A 172 1 O VAL A 170 N HIS A 148 SHEET 3 AA2 5 ARG A 180 TYR A 186 -1 O SER A 181 N ARG A 171 SHEET 4 AA2 5 ARG A 189 THR A 197 -1 O ILE A 195 N ARG A 180 SHEET 5 AA2 5 LEU A 203 TYR A 204 -1 O TYR A 204 N ASN A 196 SHEET 1 AA3 3 TYR A 147 PRO A 150 0 SHEET 2 AA3 3 SER A 167 GLU A 172 1 O VAL A 170 N HIS A 148 SHEET 3 AA3 3 TYR A 234 PRO A 235 1 O TYR A 234 N PHE A 168 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1