HEADER TRANSFERASE 12-AUG-17 6AN9 TITLE CRYSTAL STRUCTURE OF PPK2 CLASS III IN COMPLEX WITH ADP FROM CYTOPHAGA TITLE 2 HUTCHINSONII ATCC 33406 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPHOSPHATE:AMP PHOSPHOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.4.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYTOPHAGA HUTCHINSONII (STRAIN ATCC 33406 / SOURCE 3 NCIMB 9469); SOURCE 4 ORGANISM_TAXID: 269798; SOURCE 5 STRAIN: ATCC 33406 / NCIMB 9469; SOURCE 6 GENE: CHU_0107; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS PPK2, POLYPHOSPHATE KINASE, ADP-BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,A.JOACHIMIAK,A.YAKUNIN REVDAT 3 04-OCT-23 6AN9 1 REMARK REVDAT 2 29-JUL-20 6AN9 1 JRNL REVDAT 1 16-JAN-19 6AN9 0 JRNL AUTH B.NOCEK,A.N.KHUSNUTDINOVA,M.RUSZKOWSKI,R.FLICK,M.BURDA, JRNL AUTH 2 K.BATYROVA,G.BROWN,A.MUCHA,A.JOACHIMIAK,L.BERLICKI, JRNL AUTH 3 A.F.YAKUNIN JRNL TITL STRUCTURAL INSIGHTS INTO SUBSTRATE SELECTIVITY AND ACTIVITY JRNL TITL 2 OF BACTERIAL POLYPHOSPHATE KINASES JRNL REF ACS CATALYSIS V. 8 10746 2018 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.8B03151 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2363: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.640 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 44346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.2957 - 4.7625 0.93 2683 119 0.1723 0.1982 REMARK 3 2 4.7625 - 3.7811 0.98 2680 136 0.1301 0.1334 REMARK 3 3 3.7811 - 3.3034 0.99 2647 162 0.1671 0.1864 REMARK 3 4 3.3034 - 3.0015 0.99 2660 135 0.1967 0.2240 REMARK 3 5 3.0015 - 2.7864 0.99 2683 126 0.2005 0.2359 REMARK 3 6 2.7864 - 2.6222 0.99 2647 138 0.2059 0.2918 REMARK 3 7 2.6222 - 2.4909 0.99 2623 143 0.1884 0.2448 REMARK 3 8 2.4909 - 2.3825 1.00 2637 136 0.1786 0.2298 REMARK 3 9 2.3825 - 2.2908 0.99 2639 135 0.1832 0.2295 REMARK 3 10 2.2908 - 2.2117 1.00 2626 131 0.1777 0.2129 REMARK 3 11 2.2117 - 2.1426 1.00 2632 142 0.1864 0.2136 REMARK 3 12 2.1426 - 2.0813 0.99 2610 148 0.1918 0.2448 REMARK 3 13 2.0813 - 2.0266 1.00 2609 152 0.1993 0.2288 REMARK 3 14 2.0266 - 1.9771 1.00 2603 147 0.2038 0.2303 REMARK 3 15 1.9771 - 1.9322 1.00 2615 149 0.2255 0.2540 REMARK 3 16 1.9322 - 1.8911 0.97 2510 143 0.2590 0.2681 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2489 REMARK 3 ANGLE : 1.452 3383 REMARK 3 CHIRALITY : 0.082 380 REMARK 3 PLANARITY : 0.010 428 REMARK 3 DIHEDRAL : 16.252 1485 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9005 1.4700 37.7148 REMARK 3 T TENSOR REMARK 3 T11: 0.2553 T22: 0.7703 REMARK 3 T33: 0.4818 T12: -0.0578 REMARK 3 T13: 0.0000 T23: 0.0980 REMARK 3 L TENSOR REMARK 3 L11: 0.1879 L22: 0.1386 REMARK 3 L33: 0.3066 L12: -0.0280 REMARK 3 L13: 0.1325 L23: -0.1645 REMARK 3 S TENSOR REMARK 3 S11: -0.0453 S12: 0.0299 S13: -0.1321 REMARK 3 S21: -0.0059 S22: 0.2855 S23: 0.4621 REMARK 3 S31: 0.1065 S32: -0.8135 S33: 0.2907 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5419 14.8211 49.9907 REMARK 3 T TENSOR REMARK 3 T11: 0.3191 T22: 0.4728 REMARK 3 T33: 0.3355 T12: 0.0042 REMARK 3 T13: 0.0543 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.0256 L22: 0.0845 REMARK 3 L33: 0.0769 L12: -0.0760 REMARK 3 L13: -0.0195 L23: 0.1440 REMARK 3 S TENSOR REMARK 3 S11: -0.0804 S12: -0.1404 S13: 0.2620 REMARK 3 S21: 0.0541 S22: 0.0108 S23: -0.1796 REMARK 3 S31: -0.2582 S32: -0.1471 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4399 6.8966 40.4819 REMARK 3 T TENSOR REMARK 3 T11: 0.3145 T22: 0.3877 REMARK 3 T33: 0.3331 T12: 0.0113 REMARK 3 T13: -0.0067 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.1239 L22: 0.2840 REMARK 3 L33: 0.0266 L12: -0.1734 REMARK 3 L13: 0.0189 L23: 0.1170 REMARK 3 S TENSOR REMARK 3 S11: -0.0526 S12: -0.1040 S13: 0.0757 REMARK 3 S21: 0.0113 S22: -0.0424 S23: -0.0380 REMARK 3 S31: -0.2039 S32: -0.4373 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.5100 -6.4144 36.1565 REMARK 3 T TENSOR REMARK 3 T11: 0.2522 T22: 0.3098 REMARK 3 T33: 0.2843 T12: -0.0972 REMARK 3 T13: -0.0092 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.6708 L22: 0.7086 REMARK 3 L33: 0.6899 L12: -0.3296 REMARK 3 L13: 0.0043 L23: -0.3572 REMARK 3 S TENSOR REMARK 3 S11: 0.0803 S12: 0.0553 S13: -0.0183 REMARK 3 S21: -0.0924 S22: -0.0052 S23: 0.0070 REMARK 3 S31: 0.1380 S32: -0.1354 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3438 15.0689 20.6415 REMARK 3 T TENSOR REMARK 3 T11: 0.4557 T22: 0.5359 REMARK 3 T33: 0.4097 T12: 0.0049 REMARK 3 T13: -0.0419 T23: 0.0593 REMARK 3 L TENSOR REMARK 3 L11: 0.0316 L22: 0.0052 REMARK 3 L33: 0.0627 L12: 0.0131 REMARK 3 L13: -0.0427 L23: -0.0308 REMARK 3 S TENSOR REMARK 3 S11: 0.0983 S12: -0.0346 S13: 0.2382 REMARK 3 S21: -0.0173 S22: -0.0516 S23: -0.0654 REMARK 3 S31: -0.3912 S32: -0.4282 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 220 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6701 -2.7759 29.1471 REMARK 3 T TENSOR REMARK 3 T11: 0.2894 T22: 0.4651 REMARK 3 T33: 0.3405 T12: -0.1093 REMARK 3 T13: -0.0461 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 0.1567 L22: 0.3108 REMARK 3 L33: 0.2270 L12: -0.1877 REMARK 3 L13: 0.0561 L23: 0.1847 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: 0.0513 S13: -0.0899 REMARK 3 S21: -0.1106 S22: 0.1173 S23: 0.0474 REMARK 3 S31: 0.0687 S32: -0.5037 S33: 0.0007 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 258 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4381 7.7485 44.9380 REMARK 3 T TENSOR REMARK 3 T11: 0.2501 T22: 0.5099 REMARK 3 T33: 0.3424 T12: 0.0297 REMARK 3 T13: -0.0024 T23: 0.0455 REMARK 3 L TENSOR REMARK 3 L11: 0.0372 L22: 0.0671 REMARK 3 L33: 0.0432 L12: -0.0331 REMARK 3 L13: 0.0353 L23: 0.0585 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: 0.0875 S13: -0.1254 REMARK 3 S21: 0.1269 S22: -0.0799 S23: 0.1216 REMARK 3 S31: -0.2723 S32: -0.3262 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 277 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.2007 17.2263 75.2547 REMARK 3 T TENSOR REMARK 3 T11: 0.4372 T22: 0.5289 REMARK 3 T33: 0.3662 T12: -0.0547 REMARK 3 T13: 0.0529 T23: -0.0547 REMARK 3 L TENSOR REMARK 3 L11: 0.0614 L22: 0.0165 REMARK 3 L33: 0.1880 L12: 0.1051 REMARK 3 L13: -0.1694 L23: -0.0814 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: 0.0947 S13: -0.3609 REMARK 3 S21: -0.0840 S22: 0.3020 S23: -0.2577 REMARK 3 S31: -0.4748 S32: -0.0441 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AN9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229452. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44492 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 39.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3RHF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M AMMONIUM TARTRATE DIBASIC, PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 55.56050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 55.56050 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.28100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.56050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.64050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.56050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 133.92150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.56050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 133.92150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.56050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.64050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 55.56050 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 55.56050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.28100 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 55.56050 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 55.56050 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 89.28100 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 55.56050 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 133.92150 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 55.56050 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 44.64050 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 55.56050 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 44.64050 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 55.56050 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 133.92150 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 55.56050 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 55.56050 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.28100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 ASP A 34 REMARK 465 HIS A 35 REMARK 465 LYS A 36 REMARK 465 SER A 303 REMARK 465 SER A 304 REMARK 465 ASP A 305 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 LYS A 302 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2171 O HOH A 2242 1.73 REMARK 500 OD2 ASP A 28 O HOH A 2101 2.10 REMARK 500 OH TYR A 236 O HOH A 2102 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 64 26.31 -153.19 REMARK 500 LYS A 103 -162.70 -114.39 REMARK 500 ARG A 133 159.73 67.90 REMARK 500 LEU A 140 -84.22 -124.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 2002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RHF RELATED DB: PDB DBREF 6AN9 A 1 305 UNP Q11YW6 Q11YW6_CYTH3 1 305 SEQRES 1 A 305 MET ALA THR ASP PHE SER LYS LEU SER LYS TYR VAL GLU SEQRES 2 A 305 THR LEU ARG VAL LYS PRO LYS GLN SER ILE ASP LEU LYS SEQRES 3 A 305 LYS ASP PHE ASP THR ASP TYR ASP HIS LYS MET LEU THR SEQRES 4 A 305 LYS GLU GLU GLY GLU GLU LEU LEU ASN LEU GLY ILE SER SEQRES 5 A 305 LYS LEU SER GLU ILE GLN GLU LYS LEU TYR ALA SER GLY SEQRES 6 A 305 THR LYS SER VAL LEU ILE VAL PHE GLN ALA MET ASP ALA SEQRES 7 A 305 ALA GLY LYS ASP GLY THR VAL LYS HIS ILE MET THR GLY SEQRES 8 A 305 LEU ASN PRO GLN GLY VAL LYS VAL THR SER PHE LYS VAL SEQRES 9 A 305 PRO SER LYS ILE GLU LEU SER HIS ASP TYR LEU TRP ARG SEQRES 10 A 305 HIS TYR VAL ALA LEU PRO ALA THR GLY GLU ILE GLY ILE SEQRES 11 A 305 PHE ASN ARG SER HIS TYR GLU ASN VAL LEU VAL THR ARG SEQRES 12 A 305 VAL HIS PRO GLU TYR LEU LEU SER GLU GLN THR SER GLY SEQRES 13 A 305 VAL THR ALA ILE GLU GLN VAL ASN GLN LYS PHE TRP ASP SEQRES 14 A 305 LYS ARG PHE GLN GLN ILE ASN ASN PHE GLU GLN HIS ILE SEQRES 15 A 305 SER GLU ASN GLY THR ILE VAL LEU LYS PHE PHE LEU HIS SEQRES 16 A 305 VAL SER LYS LYS GLU GLN LYS LYS ARG PHE ILE GLU ARG SEQRES 17 A 305 ILE GLU LEU ASP THR LYS ASN TRP LYS PHE SER THR GLY SEQRES 18 A 305 ASP LEU LYS GLU ARG ALA HIS TRP LYS ASP TYR ARG ASN SEQRES 19 A 305 ALA TYR GLU ASP MET LEU ALA ASN THR SER THR LYS GLN SEQRES 20 A 305 ALA PRO TRP PHE VAL ILE PRO ALA ASP ASP LYS TRP PHE SEQRES 21 A 305 THR ARG LEU LEU ILE ALA GLU ILE ILE CYS THR GLU LEU SEQRES 22 A 305 GLU LYS LEU ASN LEU THR PHE PRO THR VAL SER LEU GLU SEQRES 23 A 305 GLN LYS ALA GLU LEU GLU LYS ALA LYS ALA GLU LEU VAL SEQRES 24 A 305 ALA GLU LYS SER SER ASP HET ADP A2001 39 HET GOL A2002 14 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *152(H2 O) HELIX 1 AA1 PHE A 5 THR A 14 1 10 HELIX 2 AA2 ASP A 24 PHE A 29 1 6 HELIX 3 AA3 THR A 39 GLY A 65 1 27 HELIX 4 AA4 GLY A 80 GLY A 91 1 12 HELIX 5 AA5 LEU A 92 GLN A 95 5 4 HELIX 6 AA6 SER A 106 SER A 111 1 6 HELIX 7 AA7 LEU A 115 ALA A 121 1 7 HELIX 8 AA8 SER A 134 VAL A 139 5 6 HELIX 9 AA9 LEU A 140 HIS A 145 1 6 HELIX 10 AB1 PRO A 146 GLU A 152 5 7 HELIX 11 AB2 ALA A 159 VAL A 163 5 5 HELIX 12 AB3 ASN A 164 ASN A 185 1 22 HELIX 13 AB4 SER A 197 LEU A 211 1 15 HELIX 14 AB5 LEU A 211 TRP A 216 1 6 HELIX 15 AB6 LYS A 217 PHE A 218 5 2 HELIX 16 AB7 SER A 219 THR A 220 5 2 HELIX 17 AB8 GLY A 221 ALA A 227 1 7 HELIX 18 AB9 HIS A 228 SER A 244 1 17 HELIX 19 AC1 ASP A 257 LYS A 275 1 19 HELIX 20 AC2 SER A 284 ALA A 300 1 17 SHEET 1 AA1 5 VAL A 97 SER A 101 0 SHEET 2 AA1 5 ILE A 128 ASN A 132 1 O ILE A 130 N THR A 100 SHEET 3 AA1 5 SER A 68 ALA A 75 1 N VAL A 69 O GLY A 129 SHEET 4 AA1 5 THR A 187 HIS A 195 1 O ILE A 188 N SER A 68 SHEET 5 AA1 5 TRP A 250 PRO A 254 1 O ILE A 253 N HIS A 195 SITE 1 AC1 17 LYS A 81 ASP A 82 PHE A 102 LYS A 103 SITE 2 AC1 17 VAL A 104 PRO A 105 ARG A 117 ARG A 133 SITE 3 AC1 17 GLU A 137 ASN A 138 VAL A 141 THR A 142 SITE 4 AC1 17 HOH A2109 HOH A2111 HOH A2151 HOH A2176 SITE 5 AC1 17 HOH A2209 SITE 1 AC2 7 HIS A 195 SER A 197 LYS A 198 TRP A 229 SITE 2 AC2 7 ARG A 233 HOH A2216 HOH A2217 CRYST1 111.121 111.121 178.562 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008999 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008999 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005600 0.00000