HEADER OXIDOREDUCTASE, HYDROLASE 17-AUG-17 6APE TITLE CRYSTAL STRUCTURE OF BIFUNCTIONAL PROTEIN FOLD FROM HELICOBACTER TITLE 2 PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL PROTEIN FOLD; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEPYC.00934.A.B1; COMPND 5 EC: 1.5.1.5,3.5.4.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN G27); SOURCE 3 ORGANISM_TAXID: 563041; SOURCE 4 STRAIN: G27; SOURCE 5 GENE: FOLD, HPG27_536; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: HEPYC.00934.A.B1 KEYWDS SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 2 FOLD, HYDROLASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 04-OCT-23 6APE 1 LINK REVDAT 2 06-FEB-19 6APE 1 REMARK REVDAT 1 13-SEP-17 6APE 0 JRNL AUTH SSGCID,S.L.DELKER,D.M.DRANOW,D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF BIFUNCTIONAL PROTEIN FOLD FROM JRNL TITL 2 HELICOBACTER PYLORI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12RC2_2821 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 56863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.450 REMARK 3 FREE R VALUE TEST SET COUNT : 1962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.2310 - 3.4936 1.00 4095 168 0.1484 0.1800 REMARK 3 2 3.4936 - 2.7734 1.00 4003 130 0.1642 0.1578 REMARK 3 3 2.7734 - 2.4230 1.00 3963 130 0.1739 0.2030 REMARK 3 4 2.4230 - 2.2015 1.00 3928 143 0.1644 0.1560 REMARK 3 5 2.2015 - 2.0437 1.00 3928 143 0.1649 0.1751 REMARK 3 6 2.0437 - 1.9232 1.00 3897 152 0.1755 0.2030 REMARK 3 7 1.9232 - 1.8269 1.00 3924 123 0.1818 0.1710 REMARK 3 8 1.8269 - 1.7474 1.00 3885 133 0.1791 0.2250 REMARK 3 9 1.7474 - 1.6801 1.00 3885 135 0.1778 0.1838 REMARK 3 10 1.6801 - 1.6222 1.00 3893 136 0.1723 0.1606 REMARK 3 11 1.6222 - 1.5714 1.00 3900 139 0.1817 0.2375 REMARK 3 12 1.5714 - 1.5265 1.00 3877 142 0.1945 0.2094 REMARK 3 13 1.5265 - 1.4863 1.00 3866 150 0.2010 0.2369 REMARK 3 14 1.4863 - 1.4501 1.00 3857 138 0.2206 0.2407 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2318 REMARK 3 ANGLE : 0.794 3171 REMARK 3 CHIRALITY : 0.075 396 REMARK 3 PLANARITY : 0.005 398 REMARK 3 DIHEDRAL : 14.968 908 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -15.0450 26.0503 -15.2630 REMARK 3 T TENSOR REMARK 3 T11: 0.1099 T22: 0.1353 REMARK 3 T33: 0.1092 T12: -0.0091 REMARK 3 T13: 0.0034 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.7409 L22: 1.7834 REMARK 3 L33: 0.5305 L12: -0.0960 REMARK 3 L13: 0.0440 L23: -0.1704 REMARK 3 S TENSOR REMARK 3 S11: 0.0354 S12: -0.0656 S13: 0.0261 REMARK 3 S21: 0.1190 S22: -0.0213 S23: 0.1509 REMARK 3 S31: -0.0085 S32: -0.0966 S33: -0.0127 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6APE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229615. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56895 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 33.222 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.194 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.18 REMARK 200 R MERGE FOR SHELL (I) : 0.42100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3P2O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRAY 291037 MORPHEUS A3: 10% W/V PEG REMARK 280 4000, 20% V/V GLYCEROL 0.03 M OF EACH DIVALENT CATION (0.3 M REMARK 280 MAGNESIUM CHLORIDE, 0.3 M CALCIUM CHLORIDE) 0.1 M MES/IMIDAZOLE REMARK 280 PH 6.5 : CRYO: DIRECT: HEPYC.00934.A.B1 PS38251 AT 20 MG/ML, REMARK 280 PUCK MXK4-8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.90000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.90000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.94000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.52000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.94000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.52000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.90000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.94000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.52000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.90000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.94000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.52000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -41.90000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 620 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 289 REMARK 465 PHE A 290 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 GLN A 32 CG CD OE1 NE2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 ASN A 239 CG OD1 ND2 REMARK 470 ARG A 287 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 288 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 401 O HOH A 522 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 135 CB CYS A 135 SG -0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 140 -165.90 -161.20 REMARK 500 ILE A 174 -70.96 -129.37 REMARK 500 HIS A 193 -167.10 -169.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 725 DISTANCE = 5.85 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 248 OD1 REMARK 620 2 HOH A 433 O 34.2 REMARK 620 3 HOH A 686 O 31.0 3.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 460 O REMARK 620 2 HOH A 673 O 88.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 DBREF 6APE A 1 290 UNP B5Z6U8 B5Z6U8_HELPG 1 290 SEQADV 6APE MET A -7 UNP B5Z6U8 INITIATING METHIONINE SEQADV 6APE ALA A -6 UNP B5Z6U8 EXPRESSION TAG SEQADV 6APE HIS A -5 UNP B5Z6U8 EXPRESSION TAG SEQADV 6APE HIS A -4 UNP B5Z6U8 EXPRESSION TAG SEQADV 6APE HIS A -3 UNP B5Z6U8 EXPRESSION TAG SEQADV 6APE HIS A -2 UNP B5Z6U8 EXPRESSION TAG SEQADV 6APE HIS A -1 UNP B5Z6U8 EXPRESSION TAG SEQADV 6APE HIS A 0 UNP B5Z6U8 EXPRESSION TAG SEQRES 1 A 298 MET ALA HIS HIS HIS HIS HIS HIS MET PRO ASN ARG GLY SEQRES 2 A 298 VAL VAL LEU LEU ASP GLY GLN ALA LEU ALA TYR SER ILE SEQRES 3 A 298 GLU LYS ASP LEU LYS ASN LYS ILE GLN ILE ILE THR VAL SEQRES 4 A 298 GLN VAL HIS LYS ARG PRO LYS LEU ALA VAL ILE LEU VAL SEQRES 5 A 298 GLY LYS ASP PRO ALA SER ILE THR TYR VAL ASN MET LYS SEQRES 6 A 298 ILE LYS ALA CYS GLU ARG VAL GLY MET ASP PHE ASP LEU SEQRES 7 A 298 LYS THR LEU GLN GLU ASN VAL THR GLU ALA GLU LEU LEU SEQRES 8 A 298 SER LEU ILE LYS ASP TYR ASN THR ASP GLN ASN ILE SER SEQRES 9 A 298 GLY VAL LEU VAL GLN LEU PRO LEU PRO ARG HIS ILE ASP SEQRES 10 A 298 SER LYS MET VAL LEU GLU ALA ILE ASP PRO SER LYS ASP SEQRES 11 A 298 VAL ASP GLY PHE HIS PRO LEU ASN ILE GLY LYS LEU CYS SEQRES 12 A 298 THR GLN LYS GLU SER PHE LEU PRO ALA THR PRO MET GLY SEQRES 13 A 298 VAL MET ARG LEU LEU LYS HIS TYR HIS ILE GLU ILE LYS SEQRES 14 A 298 GLY LYS ASP VAL ALA ILE ILE GLY ALA SER ASN ILE ILE SEQRES 15 A 298 GLY LYS PRO LEU SER MET LEU MET LEU ASN ALA GLY ALA SEQRES 16 A 298 SER VAL SER VAL CYS HIS ILE LEU THR LYS ASP ILE SER SEQRES 17 A 298 PHE TYR THR GLN ASN ALA ASP ILE VAL CYS VAL GLY VAL SEQRES 18 A 298 GLY LYS PRO ASP LEU ILE LYS ALA SER MET LEU LYS LYS SEQRES 19 A 298 GLY ALA VAL VAL VAL ASP ILE GLY ILE ASN HIS LEU ASN SEQRES 20 A 298 ASP GLY ARG ILE VAL GLY ASP VAL ASP PHE THR ASN ALA SEQRES 21 A 298 GLN LYS VAL ALA GLY PHE ILE THR PRO VAL PRO LYS GLY SEQRES 22 A 298 VAL GLY PRO MET THR ILE VAL SER LEU LEU GLU ASN THR SEQRES 23 A 298 LEU ILE ALA PHE GLU LYS GLN GLN ARG LYS GLY PHE HET NA A 301 1 HET NA A 302 1 HET GOL A 303 12 HET GOL A 304 6 HET GOL A 305 6 HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NA 2(NA 1+) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *325(H2 O) HELIX 1 AA1 ASP A 10 HIS A 34 1 25 HELIX 2 AA2 ASP A 47 GLY A 65 1 19 HELIX 3 AA3 THR A 78 ASP A 92 1 15 HELIX 4 AA4 ASP A 109 ILE A 117 1 9 HELIX 5 AA5 ASP A 118 ASP A 122 5 5 HELIX 6 AA6 HIS A 127 THR A 136 1 10 HELIX 7 AA7 PRO A 143 TYR A 156 1 14 HELIX 8 AA8 ILE A 174 ALA A 185 1 12 HELIX 9 AA9 ASP A 198 ALA A 206 1 9 HELIX 10 AB1 LYS A 220 LEU A 224 5 5 HELIX 11 AB2 ASP A 248 GLN A 253 1 6 HELIX 12 AB3 GLY A 265 LYS A 288 1 24 SHEET 1 AA1 6 VAL A 7 LEU A 8 0 SHEET 2 AA1 6 PHE A 258 ILE A 259 1 O ILE A 259 N VAL A 7 SHEET 3 AA1 6 VAL A 229 ASP A 232 1 N VAL A 230 O PHE A 258 SHEET 4 AA1 6 ILE A 208 VAL A 211 1 N VAL A 209 O VAL A 231 SHEET 5 AA1 6 ASP A 164 ILE A 168 1 N ILE A 168 O CYS A 210 SHEET 6 AA1 6 SER A 188 CYS A 192 1 O SER A 190 N ILE A 167 SHEET 1 AA2 3 ASP A 67 LEU A 73 0 SHEET 2 AA2 3 LYS A 38 VAL A 44 1 N VAL A 41 O ASP A 69 SHEET 3 AA2 3 GLY A 97 VAL A 100 1 O GLY A 97 N ALA A 40 SHEET 1 AA3 2 ASN A 236 HIS A 237 0 SHEET 2 AA3 2 ILE A 243 VAL A 244 -1 O VAL A 244 N ASN A 236 LINK OD1 ASP A 248 NA NA A 301 1555 7444 2.59 LINK NA NA A 301 O HOH A 433 1555 1555 2.86 LINK NA NA A 301 O HOH A 686 1555 1555 2.90 LINK NA NA A 302 O HOH A 460 1555 1555 3.08 LINK NA NA A 302 O HOH A 673 1555 1555 2.86 CISPEP 1 LEU A 102 PRO A 103 0 3.40 CISPEP 2 VAL A 262 PRO A 263 0 -2.49 SITE 1 AC1 4 LYS A 87 ASP A 248 HOH A 433 HOH A 686 SITE 1 AC2 4 ILE A 160 LYS A 161 HOH A 460 HOH A 673 SITE 1 AC3 7 ILE A 174 GLY A 212 VAL A 213 GLY A 214 SITE 2 AC3 7 GLY A 234 ILE A 235 HOH A 595 SITE 1 AC4 2 ARG A 106 HIS A 155 SITE 1 AC5 6 LYS A 57 ASP A 124 THR A 270 LEU A 274 SITE 2 AC5 6 HOH A 421 HOH A 426 CRYST1 69.880 109.040 83.800 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014310 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009171 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011933 0.00000