HEADER TRANSFERASE 21-AUG-17 6AQS TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM PURINE NUCLEOSIDE TITLE 2 PHOSPHORYLASE (V181D) MUTANT COMPLEXED WITH DADME-IMMG AND PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE NUCLEOSIDE PHOSPHORYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.2.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 5833; SOURCE 4 GENE: PNP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLASMODIUM FALCIPARUM, PURINE NUCLEOSIDE PHOSPHORYLASE (PNP), KEYWDS 2 PHOSPHORYLASE, PNP MUTANT, DADME-IMMG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.K.HARIJAN,R.G.DUCATI,H.A.NAMANJA-MAGLIANO,J.B.BONANNO,S.C.ALMO, AUTHOR 2 V.L.SCHRAMM REVDAT 4 04-OCT-23 6AQS 1 REMARK REVDAT 3 14-MAR-18 6AQS 1 JRNL REVDAT 2 28-FEB-18 6AQS 1 JRNL REVDAT 1 14-FEB-18 6AQS 0 JRNL AUTH R.G.DUCATI,H.A.NAMANJA-MAGLIANO,R.K.HARIJAN,J.E.FAJARDO, JRNL AUTH 2 A.FISER,J.P.DAILY,V.L.SCHRAMM JRNL TITL GENETIC RESISTANCE TO PURINE NUCLEOSIDE PHOSPHORYLASE JRNL TITL 2 INHIBITION IN JRNL REF PROC. NATL. ACAD. SCI. V. 115 2114 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29440412 JRNL DOI 10.1073/PNAS.1525670115 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 31499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1633 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2302 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3520 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1749 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.42000 REMARK 3 B22 (A**2) : -1.42000 REMARK 3 B33 (A**2) : 4.62000 REMARK 3 B12 (A**2) : -0.71000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.066 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1807 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1735 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2440 ; 1.383 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4026 ; 0.914 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 228 ; 5.917 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;38.640 ;24.648 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 318 ;11.604 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;15.152 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1974 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 336 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 918 ; 1.313 ; 2.205 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 917 ; 1.306 ; 2.201 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1144 ; 2.242 ; 3.287 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1145 ; 2.244 ; 3.291 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 887 ; 1.616 ; 2.505 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 887 ; 1.615 ; 2.505 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1297 ; 2.705 ; 3.665 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1996 ; 4.479 ;26.890 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1997 ; 4.478 ;26.909 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6AQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229633. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33133 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 45.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3PHC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRI-SODIUM CITRATE, PH 5.6, 200 REMARK 280 MM AMMONIUM SULFATE, 15% W/V PEG4000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 47.55500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.45589 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 45.18700 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 47.55500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.45589 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 45.18700 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 47.55500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.45589 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 45.18700 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 47.55500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.45589 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 45.18700 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 47.55500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.45589 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 45.18700 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 47.55500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.45589 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 45.18700 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.91178 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 90.37400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 54.91178 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 90.37400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 54.91178 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 90.37400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 54.91178 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 90.37400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 54.91178 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 90.37400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 54.91178 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 90.37400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 47.55500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 82.36768 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -47.55500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 82.36768 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 -47.55500 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 27.45589 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 45.18700 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 109.82357 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 45.18700 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 47.55500 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 27.45589 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 45.18700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 PRO A 209 REMARK 465 PHE A 210 REMARK 465 LYS A 211 REMARK 465 TRP A 212 REMARK 465 ASP A 213 REMARK 465 GLU A 214 REMARK 465 GLY A 215 REMARK 465 ASP A 216 REMARK 465 PHE A 217 REMARK 465 ASP A 218 REMARK 465 ASN A 219 REMARK 465 ASN A 220 REMARK 465 LEU A 221 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 531 O HOH A 542 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 533 O HOH A 533 12555 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 45 -128.40 52.73 REMARK 500 ASP A 115 -169.68 -120.93 REMARK 500 ASN A 177 22.99 80.35 REMARK 500 GLU A 182 -150.70 -149.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IM5 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 DBREF 6AQS A 1 245 UNP Q8T9Z7 Q8T9Z7_PLAFA 1 245 SEQADV 6AQS SER A 0 UNP Q8T9Z7 EXPRESSION TAG SEQADV 6AQS ASP A 181 UNP Q8T9Z7 VAL 181 ENGINEERED MUTATION SEQRES 1 A 246 SER MET ASP ASN LEU LEU ARG HIS LEU LYS ILE SER LYS SEQRES 2 A 246 GLU GLN ILE THR PRO VAL VAL LEU VAL VAL GLY ASP PRO SEQRES 3 A 246 GLY ARG VAL ASP LYS ILE LYS VAL VAL CYS ASP SER TYR SEQRES 4 A 246 VAL ASP LEU ALA TYR ASN ARG GLU TYR LYS SER VAL GLU SEQRES 5 A 246 CYS HIS TYR LYS GLY GLN LYS PHE LEU CYS VAL SER HIS SEQRES 6 A 246 GLY VAL GLY SER ALA GLY CYS ALA VAL CYS PHE GLU GLU SEQRES 7 A 246 LEU CYS GLN ASN GLY ALA LYS VAL ILE ILE ARG ALA GLY SEQRES 8 A 246 SER CYS GLY SER LEU GLN PRO ASP LEU ILE LYS ARG GLY SEQRES 9 A 246 ASP ILE CYS ILE CYS ASN ALA ALA VAL ARG GLU ASP ARG SEQRES 10 A 246 VAL SER HIS LEU LEU ILE HIS GLY ASP PHE PRO ALA VAL SEQRES 11 A 246 GLY ASP PHE ASP VAL TYR ASP THR LEU ASN LYS CYS ALA SEQRES 12 A 246 GLN GLU LEU ASN VAL PRO VAL PHE ASN GLY ILE SER VAL SEQRES 13 A 246 SER SER ASP MET TYR TYR PRO ASN LYS ILE ILE PRO SER SEQRES 14 A 246 ARG LEU GLU ASP TYR SER LYS ALA ASN ALA ALA VAL ASP SEQRES 15 A 246 GLU MET GLU LEU ALA THR LEU MET VAL ILE GLY THR LEU SEQRES 16 A 246 ARG LYS VAL LYS THR GLY GLY ILE LEU ILE VAL ASP GLY SEQRES 17 A 246 CYS PRO PHE LYS TRP ASP GLU GLY ASP PHE ASP ASN ASN SEQRES 18 A 246 LEU VAL PRO HIS GLN LEU GLU ASN MET ILE LYS ILE ALA SEQRES 19 A 246 LEU GLY ALA CYS ALA LYS LEU ALA THR LYS TYR ALA HET PO4 A 301 5 HET IM5 A 302 20 HET EDO A 303 4 HET EDO A 304 4 HETNAM PO4 PHOSPHATE ION HETNAM IM5 2-AMINO-7-{[(3R,4R)-3-HYDROXY-4-(HYDROXYMETHYL) HETNAM 2 IM5 PYRROLIDIN-1-YL]METHYL}-3,5-DIHYDRO-4H-PYRROLO[3,2- HETNAM 3 IM5 D]PYRIMIDIN-4-ONE HETNAM EDO 1,2-ETHANEDIOL HETSYN IM5 DADME-IMMG HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PO4 O4 P 3- FORMUL 3 IM5 C12 H17 N5 O3 FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 HOH *154(H2 O) HELIX 1 AA1 SER A 11 ILE A 15 5 5 HELIX 2 AA2 ASP A 24 VAL A 33 1 10 HELIX 3 AA3 GLY A 67 GLN A 80 1 14 HELIX 4 AA4 ARG A 116 ILE A 122 1 7 HELIX 5 AA5 ASP A 131 LEU A 145 1 15 HELIX 6 AA6 ARG A 169 ALA A 176 1 8 HELIX 7 AA7 GLU A 184 ARG A 195 1 12 HELIX 8 AA8 PRO A 223 THR A 242 1 20 SHEET 1 AA1 9 SER A 37 ASN A 44 0 SHEET 2 AA1 9 TYR A 47 TYR A 54 -1 O GLU A 51 N VAL A 39 SHEET 3 AA1 9 GLN A 57 SER A 63 -1 O PHE A 59 N CYS A 52 SHEET 4 AA1 9 VAL A 18 VAL A 22 1 N LEU A 20 O LEU A 60 SHEET 5 AA1 9 VAL A 85 SER A 94 1 O ILE A 87 N VAL A 21 SHEET 6 AA1 9 VAL A 180 GLU A 182 -1 O ASP A 181 N GLY A 93 SHEET 7 AA1 9 PHE A 150 SER A 157 1 N VAL A 155 O VAL A 180 SHEET 8 AA1 9 ILE A 105 GLU A 114 1 N ILE A 105 O PHE A 150 SHEET 9 AA1 9 ALA A 128 VAL A 129 -1 O ALA A 128 N ALA A 111 SHEET 1 AA2 8 SER A 37 ASN A 44 0 SHEET 2 AA2 8 TYR A 47 TYR A 54 -1 O GLU A 51 N VAL A 39 SHEET 3 AA2 8 GLN A 57 SER A 63 -1 O PHE A 59 N CYS A 52 SHEET 4 AA2 8 VAL A 18 VAL A 22 1 N LEU A 20 O LEU A 60 SHEET 5 AA2 8 VAL A 85 SER A 94 1 O ILE A 87 N VAL A 21 SHEET 6 AA2 8 LYS A 198 GLY A 207 1 O ILE A 202 N ARG A 88 SHEET 7 AA2 8 ILE A 105 GLU A 114 -1 N CYS A 106 O LEU A 203 SHEET 8 AA2 8 ALA A 128 VAL A 129 -1 O ALA A 128 N ALA A 111 SITE 1 AC1 8 GLY A 23 ARG A 27 ARG A 45 ARG A 88 SITE 2 AC1 8 GLY A 90 SER A 91 IM5 A 302 HOH A 410 SITE 1 AC2 12 HIS A 7 SER A 91 TYR A 160 ASP A 181 SITE 2 AC2 12 GLU A 182 MET A 183 GLU A 184 ASP A 206 SITE 3 AC2 12 PO4 A 301 HOH A 437 HOH A 476 HOH A 477 SITE 1 AC3 6 HIS A 119 GLY A 124 EDO A 304 HOH A 403 SITE 2 AC3 6 HOH A 406 HOH A 430 SITE 1 AC4 4 ARG A 116 EDO A 303 HOH A 412 HOH A 487 CRYST1 95.110 95.110 135.561 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010514 0.006070 0.000000 0.00000 SCALE2 0.000000 0.012141 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007377 0.00000